Clone BO06165 Report

Search the DGRC for BO06165

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:61
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptSpn1-RA
Protein status:BO06165.pep: validated full length
Sequenced Size:1150

Clone Sequence Records

BO06165.3prime Sequence

874 bp (837 high quality bases) assembled on 2005-12-02

> BO06165.3prime
ATGGTCTAGAAAGCTTGCAGGGCTTACAACACGCCCCTGGAAATATATGG
TGTTCGCATCGCGAATGACGAAGGCAAAGGGATGATCGGCCATGAGGAAC
GTAGAAAATCCCGCTCGATTTGTGACGGCCACAGATGTGGCACCTGCGGC
CTCCGCTCCCTCCTCGTTCACCTCCAGAAACGCCTTGTGCGAGACCTGAC
TGACTTTGCCGCCTGACTTATCGGCGAACAAGCCGCTTAAGTCTGACTTG
TCGGTGAATAGCTCTCGGATGCCCAGCTTCTCTAAGGTCTCTTTGAGTTC
ATCACGAAATTCGATTTTAAACTTGGGCAGCTTAAGATAGACCTCCTTGG
CAACCAGCGGCCTGGCGAAGCCAACGATCTTCTCTTCCAGGGCGCTCAAG
CCCTCCACTTCTCGGGGCAGAAAGATAGTCATGGACAGGTTGGAGTTAAG
GTACGGCAGCTCGATGACTTGGGCATCTAGATCGCGGAAGTAGTTAGCCC
TGAATGTTCCCATTTGCGCCATCATCTGGACGGGCACACTCTTGTTCGCA
GTTACTTGGAAGGTGGAGGCTCTGGTCTTAGCTGGGTCAAACTTCGACTC
CCACTGGCCCTTAAAGTAGATGGCGTTCACCAGCAAGGCCTTCACGTCGG
ACGTCATGCTGCCGGGATCGATCATGCCCTTGATTTTACCACTGGTCTGA
TCCAGCACCCACTGGTTGATTCTCTCGGCCGCCACAGGGCCATTGGTCAG
ACTAATGGACTCCGCCTCGGACTTGAAGGGTTCCCTCACAGCGAGGTTGT
AGTTCTGATTCAGGCTGTACTGGTCGTTGACGTAGATGCGATTCGCGAGC
TTTAGTATGGGTCCCTCCTCCTGT

BO06165.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG9456-PA 1119 Spn1-RA 261..1116 874..19 4280 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:12
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-RB 1195 CG9456-RB 311..1166 874..19 4280 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:04
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6883861..6884458 874..277 2990 100 Minus
2R 25286936 2R 6884514..6884658 279..135 725 100 Minus
2R 25286936 2R 6884729..6884844 134..19 580 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:19:08 has no hits.

BO06165.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:41:54 Download gff for BO06165.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn1-PA 261..1119 16..874 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:11:44 Download gff for BO06165.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9456-PA 261..1119 16..874 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:58:38 Download gff for BO06165.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 311..1170 15..874 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:20 Download gff for BO06165.3prime
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 311..1170 15..874 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:20 Download gff for BO06165.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 6884729..6884848 15..134 98   Minus
2R 6883861..6884458 277..874 100 -> Minus
2R 6884517..6884658 135..276 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:58:38 Download gff for BO06165.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2771366..2771963 277..874 100 -> Minus
arm_2R 2772022..2772163 135..276 100 -> Minus
arm_2R 2772234..2772353 15..134 98   Minus

BO06165.5prime Sequence

863 bp (762 high quality bases) assembled on 2005-12-02

> BO06165.5prime
GAAGTTATCAGTCGACATGTATTACTTGTGCATTTTCCTGTGGGTCACTT
CAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTCCAAGAGC
CATACAAACCAGAACCTCGTCGTCTCGCCCGTCTCCATAGAGACCATCCT
TAGCATGGTCTTCATGGGCGCAGAAGGCTCGACGGCCAAGGAGCTGCAGA
GCGCCTTAGGTTTACCATCGGAGGACAAAGAGGCGGTGGCAGCCAGGTAC
GGTGCTCTCCTCAACGATCTTCAGGGACAGGAGGAGGGACCCATACTAAA
GCTCGCGAATCGCATCTACGTCAACGACCAGTACAGCCTGAATCAGAACT
ACAACCTCGCTGTGAGGGAACCCTTCAAGTCCGAGGCGGAGTCCATTAGT
CTGACCAATGGCCCTGTGGCGGCCGAGAGAATCAACCAGTGGGTGCTGGA
TCAGACCAGTGGTAAAATCAAGGGCATGATCGATCCCGGCAGCATGACGT
CCGACGTGAAGGCCTTGCTGGTGAACGCCATCTACTTTAAGGGCCAGTGG
GAGTCGAAGTTTGACCCAGCTAAGACCAGAGCCTCCACCTTCCAAGTAAC
TGCGAACAAGAGTGTGCCCGTCCAGATGATGGCGCAAATGGGAACATTCA
GGGCTAACTACTTCCGCGATCTAGATGCCCAAGTCATCGAGCTGCCGTAC
CTTAACTCCAACCTGTCCATGACTATCTTTCTGCCCCGAGAAGTGGAGGG
CTTGAGCGCCCTGGAAGAGAAGATCGTTGGCTTCGCCAGGCCGCTGGTTG
CCAAGGAGGTCTATCTTAAGCTGCCCAAGTTTAAATCGAATTTCGTGATG
AACTCAAAGAGAC

BO06165.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9456-PA 1119 Spn1-RA 1..819 17..835 4095 100 Plus
CG9456-PA 1119 Spn1-RA 818..848 833..863 155 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:59:45
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-RB 1195 CG9456-RB 51..898 17..863 4215 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:59:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6883614..6884448 30..863 4125 99.9 Plus
Blast to na_te.dros performed on 2015-02-11 04:59:44 has no hits.

BO06165.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:41:55 Download gff for BO06165.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn1-PA 1..848 17..863 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:11:46 Download gff for BO06165.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9456-PA 1..848 17..863 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:51 Download gff for BO06165.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 46..898 11..863 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:49 Download gff for BO06165.5prime
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 46..898 11..863 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:49 Download gff for BO06165.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 6883614..6884448 30..863 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:51 Download gff for BO06165.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2771119..2771953 30..863 99   Plus

BO06165.complete Sequence

1150 bp (1150 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630296

> BO06165.complete
GAAGTTATCAGTCGACATGTATTACTTGTGCATTTTCCTGTGGGTCACTT
CAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTCCAAGAGC
CATACAAACCAGAACCTCGTCGTCTCGCCCGTCTCCATAGAGACCATCCT
TAGCATGGTCTTCATGGGCGCAGAAGGCTCGACGGCCAAGGAGCTGCAGA
GCGCCTTAGGTTTACCATCGGAGGACAAAGAGGCGGTGGCAGCCAGGTAC
GGTGCTCTCCTCAACGATCTTCAGGGACAGGAGGAGGGACCCATACTAAA
GCTCGCGAATCGCATCTACGTCAACGACCAGTACAGCCTGAATCAGAACT
ACAACCTCGCTGTGAGGGAACCCTTCAAGTCCGAGGCGGAGTCCATTAGT
CTGACCAATGGCCCTGTGGCGGCCGAGAGAATCAACCAGTGGGTGCTGGA
TCAGACCAGTGGTAAAATCAAGGGCATGATCGATCCCGGCAGCATGACGT
CCGACGTGAAGGCCTTGCTGGTGAACGCCATCTACTTTAAGGGCCAGTGG
GAGTCGAAGTTTGACCCAGCTAAGACCAGAGCCTCCACCTTCCAAGTAAC
TGCGAACAAGAGTGTGCCCGTCCAGATGATGGCGCAAATGGGAACATTCA
GGGCTAACTACTTCCGCGATCTAGATGCCCAAGTCATCGAGCTGCCGTAC
CTTAACTCCAACCTGTCCATGACTATCTTTCTGCCCCGAGAAGTGGAGGG
CTTGAGCGCCCTGGAAGAGAAGATCGTTGGCTTCGCCAGGCCGCTGGTTG
CCAAGGAGGTCTATCTTAAGCTGCCCAAGTTTAAAATCGAATTTCGTGAT
GAACTCAAAGAGACCTTAGAGAAGCTGGGCATCCGAGAGCTATTCACCGA
CAAGTCAGACTTAAGCGGCTTGTTCGCCGATAAGTCAGGCGGCAAAGTCA
GTCAGGTCTCGCACAAGGCGTTTCTGGAGGTGAACGAGGAGGGAGCGGAG
GCCGCAGGTGCCACATCTGTGGCCGTCACAAATCGAGCGGGATTTTCTAC
GTTCCTCATGGCCGATCATCCCTTTGCCTTCGTCATTCGCGATGCGAACA
CCATATATTTCCAGGGGCGTGTTGTAAGCCCTGCAAGCTTTCTAGACCAT

BO06165.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:32
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-RB 1119 CG9456-PB 1..1116 17..1132 5580 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-RB 1195 CG9456-RB 51..1166 17..1132 5580 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:30
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 6883614..6884458 30..874 4225 100 Plus
2R 25286936 2R 6884514..6884658 872..1016 725 100 Plus
2R 25286936 2R 6884729..6884844 1017..1132 580 100 Plus
Blast to na_te.dros performed on 2014-11-27 07:14:31 has no hits.

BO06165.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:04 Download gff for BO06165.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RA 1..1119 17..1135 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:51:01 Download gff for BO06165.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RB 46..1170 11..1136 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:43 Download gff for BO06165.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 51..1166 17..1134 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:04 Download gff for BO06165.complete
Subject Subject Range Query Range Percent Splice Strand
Spn1-RA 323..1447 11..1136 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:27 Download gff for BO06165.complete
Subject Subject Range Query Range Percent Splice Strand
Spn42Dd-RB 51..1166 17..1134 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:27 Download gff for BO06165.complete
Subject Subject Range Query Range Percent Splice Strand
2R 6883614..6884458 30..874 100 -> Plus
2R 6884517..6884658 875..1016 100 -> Plus
2R 6884729..6884844 1017..1134 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:43 Download gff for BO06165.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 2771119..2771963 30..874 100 -> Plus
arm_2R 2772022..2772163 875..1016 100 -> Plus
arm_2R 2772234..2772349 1017..1134 98   Plus

BO06165.pep Sequence

Translation from 16 to 1150

> BO06165.pep
MYYLCIFLWVTSVACQTSKEIYQLLSKSHTNQNLVVSPVSIETILSMVFM
GAEGSTAKELQSALGLPSEDKEAVAARYGALLNDLQGQEEGPILKLANRI
YVNDQYSLNQNYNLAVREPFKSEAESISLTNGPVAAERINQWVLDQTSGK
IKGMIDPGSMTSDVKALLVNAIYFKGQWESKFDPAKTRASTFQVTANKSV
PVQMMAQMGTFRANYFRDLDAQVIELPYLNSNLSMTIFLPREVEGLSALE
EKIVGFARPLVAKEVYLKLPKFKIEFRDELKETLEKLGIRELFTDKSDLS
GLFADKSGGKVSQVSHKAFLEVNEEGAEAAGATSVAVTNRAGFSTFLMAD
HPFAFVIRDANTIYFQGRVVSPASFLDH

BO06165.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:30
Subject Length Description Subject Range Query Range Score Percent Strand
Spn42Dd-PB 372 CG9456-PB 1..372 1..372 1871 100 Plus
Spn38F-PA 372 CG9334-PA 1..370 1..372 884 49.7 Plus
Spn38F-PB 370 CG9334-PB 1..368 1..372 881 49.5 Plus
Spn28F-PA 375 CG8137-PA 1..373 1..372 854 47.9 Plus
Spn28B-PB 378 CG6717-PB 1..376 1..372 755 42.6 Plus