Clone Sequence Records
BO06165.3prime Sequence
874 bp (837 high quality bases) assembled on 2005-12-02
> BO06165.3prime
ATGGTCTAGAAAGCTTGCAGGGCTTACAACACGCCCCTGGAAATATATGG
TGTTCGCATCGCGAATGACGAAGGCAAAGGGATGATCGGCCATGAGGAAC
GTAGAAAATCCCGCTCGATTTGTGACGGCCACAGATGTGGCACCTGCGGC
CTCCGCTCCCTCCTCGTTCACCTCCAGAAACGCCTTGTGCGAGACCTGAC
TGACTTTGCCGCCTGACTTATCGGCGAACAAGCCGCTTAAGTCTGACTTG
TCGGTGAATAGCTCTCGGATGCCCAGCTTCTCTAAGGTCTCTTTGAGTTC
ATCACGAAATTCGATTTTAAACTTGGGCAGCTTAAGATAGACCTCCTTGG
CAACCAGCGGCCTGGCGAAGCCAACGATCTTCTCTTCCAGGGCGCTCAAG
CCCTCCACTTCTCGGGGCAGAAAGATAGTCATGGACAGGTTGGAGTTAAG
GTACGGCAGCTCGATGACTTGGGCATCTAGATCGCGGAAGTAGTTAGCCC
TGAATGTTCCCATTTGCGCCATCATCTGGACGGGCACACTCTTGTTCGCA
GTTACTTGGAAGGTGGAGGCTCTGGTCTTAGCTGGGTCAAACTTCGACTC
CCACTGGCCCTTAAAGTAGATGGCGTTCACCAGCAAGGCCTTCACGTCGG
ACGTCATGCTGCCGGGATCGATCATGCCCTTGATTTTACCACTGGTCTGA
TCCAGCACCCACTGGTTGATTCTCTCGGCCGCCACAGGGCCATTGGTCAG
ACTAATGGACTCCGCCTCGGACTTGAAGGGTTCCCTCACAGCGAGGTTGT
AGTTCTGATTCAGGCTGTACTGGTCGTTGACGTAGATGCGATTCGCGAGC
TTTAGTATGGGTCCCTCCTCCTGT
BO06165.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9456-PA | 1119 | Spn1-RA | 261..1116 | 874..19 | 4280 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:19:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Dd-RB | 1195 | CG9456-RB | 311..1166 | 874..19 | 4280 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:19:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6883861..6884458 | 874..277 | 2990 | 100 | Minus |
2R | 25286936 | 2R | 6884514..6884658 | 279..135 | 725 | 100 | Minus |
2R | 25286936 | 2R | 6884729..6884844 | 134..19 | 580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:19:08 has no hits.
BO06165.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:41:54 Download gff for
BO06165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn1-PA | 261..1119 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:11:44 Download gff for
BO06165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9456-PA | 261..1119 | 16..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:58:38 Download gff for
BO06165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 311..1170 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:09:20 Download gff for
BO06165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 311..1170 | 15..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:09:20 Download gff for
BO06165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6884729..6884848 | 15..134 | 98 | | Minus |
2R | 6883861..6884458 | 277..874 | 100 | -> | Minus |
2R | 6884517..6884658 | 135..276 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:58:38 Download gff for
BO06165.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2771366..2771963 | 277..874 | 100 | -> | Minus |
arm_2R | 2772022..2772163 | 135..276 | 100 | -> | Minus |
arm_2R | 2772234..2772353 | 15..134 | 98 | | Minus |
BO06165.5prime Sequence
863 bp (762 high quality bases) assembled on 2005-12-02
> BO06165.5prime
GAAGTTATCAGTCGACATGTATTACTTGTGCATTTTCCTGTGGGTCACTT
CAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTCCAAGAGC
CATACAAACCAGAACCTCGTCGTCTCGCCCGTCTCCATAGAGACCATCCT
TAGCATGGTCTTCATGGGCGCAGAAGGCTCGACGGCCAAGGAGCTGCAGA
GCGCCTTAGGTTTACCATCGGAGGACAAAGAGGCGGTGGCAGCCAGGTAC
GGTGCTCTCCTCAACGATCTTCAGGGACAGGAGGAGGGACCCATACTAAA
GCTCGCGAATCGCATCTACGTCAACGACCAGTACAGCCTGAATCAGAACT
ACAACCTCGCTGTGAGGGAACCCTTCAAGTCCGAGGCGGAGTCCATTAGT
CTGACCAATGGCCCTGTGGCGGCCGAGAGAATCAACCAGTGGGTGCTGGA
TCAGACCAGTGGTAAAATCAAGGGCATGATCGATCCCGGCAGCATGACGT
CCGACGTGAAGGCCTTGCTGGTGAACGCCATCTACTTTAAGGGCCAGTGG
GAGTCGAAGTTTGACCCAGCTAAGACCAGAGCCTCCACCTTCCAAGTAAC
TGCGAACAAGAGTGTGCCCGTCCAGATGATGGCGCAAATGGGAACATTCA
GGGCTAACTACTTCCGCGATCTAGATGCCCAAGTCATCGAGCTGCCGTAC
CTTAACTCCAACCTGTCCATGACTATCTTTCTGCCCCGAGAAGTGGAGGG
CTTGAGCGCCCTGGAAGAGAAGATCGTTGGCTTCGCCAGGCCGCTGGTTG
CCAAGGAGGTCTATCTTAAGCTGCCCAAGTTTAAATCGAATTTCGTGATG
AACTCAAAGAGAC
BO06165.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9456-PA | 1119 | Spn1-RA | 1..819 | 17..835 | 4095 | 100 | Plus |
CG9456-PA | 1119 | Spn1-RA | 818..848 | 833..863 | 155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 04:59:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Dd-RB | 1195 | CG9456-RB | 51..898 | 17..863 | 4215 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 04:59:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6883614..6884448 | 30..863 | 4125 | 99.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 04:59:44 has no hits.
BO06165.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:41:55 Download gff for
BO06165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn1-PA | 1..848 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:11:46 Download gff for
BO06165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9456-PA | 1..848 | 17..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:51 Download gff for
BO06165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 46..898 | 11..863 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:37:49 Download gff for
BO06165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 46..898 | 11..863 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:37:49 Download gff for
BO06165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6883614..6884448 | 30..863 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:51 Download gff for
BO06165.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2771119..2771953 | 30..863 | 99 | | Plus |
BO06165.complete Sequence
1150 bp (1150 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630296
> BO06165.complete
GAAGTTATCAGTCGACATGTATTACTTGTGCATTTTCCTGTGGGTCACTT
CAGTGGCATGTCAGACCTCCAAAGAGATCTACCAACTACTTTCCAAGAGC
CATACAAACCAGAACCTCGTCGTCTCGCCCGTCTCCATAGAGACCATCCT
TAGCATGGTCTTCATGGGCGCAGAAGGCTCGACGGCCAAGGAGCTGCAGA
GCGCCTTAGGTTTACCATCGGAGGACAAAGAGGCGGTGGCAGCCAGGTAC
GGTGCTCTCCTCAACGATCTTCAGGGACAGGAGGAGGGACCCATACTAAA
GCTCGCGAATCGCATCTACGTCAACGACCAGTACAGCCTGAATCAGAACT
ACAACCTCGCTGTGAGGGAACCCTTCAAGTCCGAGGCGGAGTCCATTAGT
CTGACCAATGGCCCTGTGGCGGCCGAGAGAATCAACCAGTGGGTGCTGGA
TCAGACCAGTGGTAAAATCAAGGGCATGATCGATCCCGGCAGCATGACGT
CCGACGTGAAGGCCTTGCTGGTGAACGCCATCTACTTTAAGGGCCAGTGG
GAGTCGAAGTTTGACCCAGCTAAGACCAGAGCCTCCACCTTCCAAGTAAC
TGCGAACAAGAGTGTGCCCGTCCAGATGATGGCGCAAATGGGAACATTCA
GGGCTAACTACTTCCGCGATCTAGATGCCCAAGTCATCGAGCTGCCGTAC
CTTAACTCCAACCTGTCCATGACTATCTTTCTGCCCCGAGAAGTGGAGGG
CTTGAGCGCCCTGGAAGAGAAGATCGTTGGCTTCGCCAGGCCGCTGGTTG
CCAAGGAGGTCTATCTTAAGCTGCCCAAGTTTAAAATCGAATTTCGTGAT
GAACTCAAAGAGACCTTAGAGAAGCTGGGCATCCGAGAGCTATTCACCGA
CAAGTCAGACTTAAGCGGCTTGTTCGCCGATAAGTCAGGCGGCAAAGTCA
GTCAGGTCTCGCACAAGGCGTTTCTGGAGGTGAACGAGGAGGGAGCGGAG
GCCGCAGGTGCCACATCTGTGGCCGTCACAAATCGAGCGGGATTTTCTAC
GTTCCTCATGGCCGATCATCCCTTTGCCTTCGTCATTCGCGATGCGAACA
CCATATATTTCCAGGGGCGTGTTGTAAGCCCTGCAAGCTTTCTAGACCAT
BO06165.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:14:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Dd-RB | 1119 | CG9456-PB | 1..1116 | 17..1132 | 5580 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Dd-RB | 1195 | CG9456-RB | 51..1166 | 17..1132 | 5580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:14:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6883614..6884458 | 30..874 | 4225 | 100 | Plus |
2R | 25286936 | 2R | 6884514..6884658 | 872..1016 | 725 | 100 | Plus |
2R | 25286936 | 2R | 6884729..6884844 | 1017..1132 | 580 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 07:14:31 has no hits.
BO06165.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:26:04 Download gff for
BO06165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn1-RA | 1..1119 | 17..1135 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:51:01 Download gff for
BO06165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn1-RB | 46..1170 | 11..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:09:43 Download gff for
BO06165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 51..1166 | 17..1134 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:26:04 Download gff for
BO06165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn1-RA | 323..1447 | 11..1136 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:06:27 Download gff for
BO06165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Spn42Dd-RB | 51..1166 | 17..1134 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:06:27 Download gff for
BO06165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6883614..6884458 | 30..874 | 100 | -> | Plus |
2R | 6884517..6884658 | 875..1016 | 100 | -> | Plus |
2R | 6884729..6884844 | 1017..1134 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:09:43 Download gff for
BO06165.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2771119..2771963 | 30..874 | 100 | -> | Plus |
arm_2R | 2772022..2772163 | 875..1016 | 100 | -> | Plus |
arm_2R | 2772234..2772349 | 1017..1134 | 98 | | Plus |
BO06165.pep Sequence
Translation from 16 to 1150
> BO06165.pep
MYYLCIFLWVTSVACQTSKEIYQLLSKSHTNQNLVVSPVSIETILSMVFM
GAEGSTAKELQSALGLPSEDKEAVAARYGALLNDLQGQEEGPILKLANRI
YVNDQYSLNQNYNLAVREPFKSEAESISLTNGPVAAERINQWVLDQTSGK
IKGMIDPGSMTSDVKALLVNAIYFKGQWESKFDPAKTRASTFQVTANKSV
PVQMMAQMGTFRANYFRDLDAQVIELPYLNSNLSMTIFLPREVEGLSALE
EKIVGFARPLVAKEVYLKLPKFKIEFRDELKETLEKLGIRELFTDKSDLS
GLFADKSGGKVSQVSHKAFLEVNEEGAEAAGATSVAVTNRAGFSTFLMAD
HPFAFVIRDANTIYFQGRVVSPASFLDH
BO06165.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Spn42Dd-PB | 372 | CG9456-PB | 1..372 | 1..372 | 1871 | 100 | Plus |
Spn38F-PA | 372 | CG9334-PA | 1..370 | 1..372 | 884 | 49.7 | Plus |
Spn38F-PB | 370 | CG9334-PB | 1..368 | 1..372 | 881 | 49.5 | Plus |
Spn28F-PA | 375 | CG8137-PA | 1..373 | 1..372 | 854 | 47.9 | Plus |
Spn28B-PB | 378 | CG6717-PB | 1..376 | 1..372 | 755 | 42.6 | Plus |