Clone BO06184 Report

Search the DGRC for BO06184

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:61
Well:84
Vector:pDNR-Dual
Associated Gene/TranscriptCG3700-RA
Protein status:BO06184.pep: validated full length
Sequenced Size:1114

Clone Sequence Records

BO06184.3prime Sequence

787 bp (598 high quality bases) assembled on 2005-12-02

> BO06184.3prime
ATGGTCTAGAAAGCTTGCATTGCCCCACACGATGCTCTCGATCCAGTCGG
TGTAGAGGTGGACTTTGGTATAGACACTCGGGAGTCCTTGGGAGCCACAA
ACTAATCCATATGAGACAATCCCTATGACCTGCTTCAGGCACGGATAGAG
CGGATGCTGGACGAATATAGGTCCGCCGGAGTCACCGTTGCAGGTGTCCG
CTTGGCTGGACATTGAGCCGGCACAGAACTGGGTGCGTGTATCGATGCTG
AAACGCAGGCGCTTCTGGCACACCTCGTCACTGAATCGCTGGAGGTTGAC
CTTCAGCAGGTGCGAGGACTTCACACCGTCCGCGGTAAATCCCCAGCCGG
CGGCTGTGACCTGCTGAACATCGTTGCCGCTGTCTGGCGGAAGGCATACC
GCTGCCACATGGTCGTTGAACTCAGCCTTCCGATCCAGTTCCACCAGGGC
AATATCGTTTTTAAAGCCCTGCTCTTCGTCTTCAGTATCATATCCAGGGT
GCACCACATAGTTGACCACCCGAAAGTCCTGAACCAGAGCATCATCGGTG
GTGCTGTTGTAGTCCAGCTCCCCCAGGCGAACTACAAATTTGGGCGAATC
AAAGTTTGGGTCCAGTCGCTCGGCCTTCGATTCATCCGTCTCCAGGCAAT
GCGCCGCAGTCAGTACGAATTTGGGATGCACCACGGATCCACCACAATCC
CAATTGATGTCCGACTTGGACTTGTTGGGCCGATGAGTGCCGATTAGGGC
CATGAAGGGGAACTCTTTACCGGATGCCTTTGTGCCG

BO06184.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-PA 1083 CG3700-RA 312..1080 787..19 3820 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-RA 1183 CG3700-RA 342..1110 787..19 3830 99.9 Minus
CG4927-RC 1449 CG4927-RC 450..1109 678..22 355 71.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:05
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22895060..22895672 631..19 3065 100 Minus
2R 25286936 2R 22894841..22894996 787..632 765 99.4 Minus
2R 25286936 2R 16573599..16573814 237..22 315 76.4 Minus
2R 25286936 2R 16573258..16573333 575..500 185 82.9 Minus
Blast to na_te.dros performed on 2015-02-13 12:05:06 has no hits.

BO06184.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:30 Download gff for BO06184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-PA 312..1083 16..787 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:12:34 Download gff for BO06184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-PA 312..1083 16..787 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:14 Download gff for BO06184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 342..1118 11..787 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:32 Download gff for BO06184.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 342..1118 11..787 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:32 Download gff for BO06184.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22894841..22894996 632..787 99 -> Minus
2R 22895060..22895680 11..631 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:14 Download gff for BO06184.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18782364..18782519 632..787 99 -> Minus
arm_2R 18782583..18783203 11..631 99   Minus

BO06184.5prime Sequence

768 bp (752 high quality bases) assembled on 2005-12-02

> BO06184.5prime
GAAGTTATCAGTCGACATGTATGCGCTTCCGGGAATCCAGATTCTGTTGC
TGATTGCTTCAGTCAGCGTGGTGACCGAGTACTGCGACAATGGAACGGGC
GAGTGCAAGGAGCTGACGCCCTCCGACTGTCCAGTGATATTCTACAACCA
GCACCTGATCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTG
TCTGCTGTCCCATACCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAG
ACGAGGCCTTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGC
CTGCCAGTCCACGCCCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAG
AGTTTCCCTTCATGGCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAG
TCGGACATCAATTGGGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGT
ACTGACTGCGGCGCATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGAC
TGGACCCAAACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTG
GACTACAACAGCACCACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGT
CAACTATGTGGTGCACCCTGGATATGATACTGAAGACGAAGAGCAGGGCT
TTAAAAACGATATTGCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAAC
GACCATGTGGCAGCGGTATGCCTTCCGCCAGACAGCGGCAACGATGTTCA
GCAGGTCACAGCCGCCGG

BO06184.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-PA 1083 CG3700-RA 1..752 17..768 3760 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-RA 1183 CG3700-RA 31..782 17..768 3760 100 Plus
CG4927-RC 1449 CG4927-RC 450..628 437..615 220 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22895060..22895344 484..768 1425 100 Plus
2R 25286936 2R 22894465..22894717 17..269 1265 100 Plus
2R 25286936 2R 22894783..22894996 270..483 1070 100 Plus
2R 25286936 2R 16573258..16573333 540..615 185 82.9 Plus
Blast to na_te.dros performed on 2015-02-13 12:05:13 has no hits.

BO06184.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:31 Download gff for BO06184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-PA 1..752 17..768 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:12:36 Download gff for BO06184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-PA 1..752 17..768 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:19 Download gff for BO06184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 29..782 13..768 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:44 Download gff for BO06184.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 29..782 13..768 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:44 Download gff for BO06184.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22894463..22894717 13..269 99 -> Plus
2R 22894783..22894996 270..483 100 -> Plus
2R 22895060..22895344 484..768 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:19 Download gff for BO06184.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18781986..18782240 13..269 99 -> Plus
arm_2R 18782306..18782519 270..483 100 -> Plus
arm_2R 18782583..18782867 484..768 100   Plus

BO06184.complete Sequence

1114 bp (1114 high quality bases) assembled on 2005-10-20

GenBank Submission: FJ630297

> BO06184.complete
GAAGTTATCAGTCGACATGTATGCGCTTCCGGGAATCCAGATTCTGTTGC
TGATTGCTTCAGTCAGCGTGGTGACCGAGTACTGCGACAATGGAACGGGC
GAGTGCAAGGAGCTGACGCCCTCCGACTGTCCAGTGATATTCTACAACCA
GCACCTGATCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTG
TCTGCTGTCCCATACCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAG
ACGAGGCCTTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGC
CTGCCAGTCCACGCCCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAG
AGTTTCCCTTCATGGCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAG
TCGGACATCAATTGGGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGT
ACTGACTGCGGCGCATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGAC
TGGACCCAAACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTG
GACTACAACAGCACCACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGT
CAACTATGTGGTGCACCCTGGATATGATACTGAAGACGAAGAGCAGGGCT
TTAAAAACGATATTGCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAAC
GACCATGTGGCAGCGGTATGCCTTCCGCCAGACAGCGGCAACGATGTTCA
GCAGGTCACAGCCGCCGGCTGGGGATTTACCGCGGACGGTGTGAAGTCCT
CGCACCTGCTGAAGGTCAACCTCCAGCGATTCAGTGACGAGGTGTGCCAG
AAGCGCCTGCGTTTCAGCATCGATACACGCACCCAGTTCTGTGCCGGCTC
AATGTCCAGCCAAGCGGACACCTGCAACGGTGACTCCGGCGGACCTATAT
TCGTCCAGCATCCGCTCTATCCGTGCCTGAAGCAGGTCATAGGGATTGTC
TCATATGGATTAGTTTGTGGCTCCCAAGGACTCCCGAGTGTCTATACCAA
AGTCCACCTCTACACCGACTGGATCGAGAGCATCGTGTGGGGCAATGCAA
GCTTTCTAGACCAT

BO06184.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-RA 1083 CG3700-PA 1..1080 17..1096 5400 100 Plus
CG4927-RC 1089 CG4927-PC 868..1083 878..1093 315 76.4 Plus
CG4927-RC 1089 CG4927-PC 424..602 437..615 220 74.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-RA 1183 CG3700-RA 31..1110 17..1096 5400 100 Plus
CG4927-RC 1449 CG4927-RC 894..1109 878..1093 315 76.4 Plus
CG4927-RC 1449 CG4927-RC 450..628 437..615 220 74.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:06
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22895060..22895672 484..1096 3065 100 Plus
2R 25286936 2R 22894465..22894717 17..269 1265 100 Plus
2R 25286936 2R 22894783..22894996 270..483 1070 100 Plus
2R 25286936 2R 16573599..16573814 878..1093 315 76.4 Plus
2R 25286936 2R 16573258..16573333 540..615 185 82.9 Plus
Blast to na_te.dros performed on 2014-11-27 14:11:07 has no hits.

BO06184.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:37 Download gff for BO06184.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RB 1..1083 17..1099 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:26 Download gff for BO06184.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RB 4664..5753 13..1104 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:55 Download gff for BO06184.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 31..1110 17..1098 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:37 Download gff for BO06184.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RB 4664..5753 13..1104 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:19 Download gff for BO06184.complete
Subject Subject Range Query Range Percent Splice Strand
CG3700-RA 31..1110 17..1098 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:19 Download gff for BO06184.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22894465..22894717 17..269 100 -> Plus
2R 22894783..22894996 270..483 100 -> Plus
2R 22895060..22895672 484..1098 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:55 Download gff for BO06184.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18781988..18782240 17..269 100 -> Plus
arm_2R 18782306..18782519 270..483 100 -> Plus
arm_2R 18782583..18783195 484..1098 99   Plus

BO06184.pep Sequence

Translation from 16 to 1114

> BO06184.pep
MYALPGIQILLLIASVSVVTEYCDNGTGECKELTPSDCPVIFYNQHLIGA
EVKYCDEFNDIVCCPIPLDHQNLKPAEQTRPFEKQCKQYNEVRSACQSTP
FIVGGTKASGKEFPFMALIGTHRPNKSKSDINWDCGGSVVHPKFVLTAAH
CLETDESKAERLDPNFDSPKFVVRLGELDYNSTTDDALVQDFRVVNYVVH
PGYDTEDEEQGFKNDIALVELDRKAEFNDHVAAVCLPPDSGNDVQQVTAA
GWGFTADGVKSSHLLKVNLQRFSDEVCQKRLRFSIDTRTQFCAGSMSSQA
DTCNGDSGGPIFVQHPLYPCLKQVIGIVSYGLVCGSQGLPSVYTKVHLYT
DWIESIVWGNASFLDH

BO06184.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG3700-PA 360 CG3700-PA 1..360 1..360 1946 100 Plus
CG4927-PC 362 CG4927-PC 7..361 9..359 1235 63.6 Plus
CG11843-PB 316 CG11843-PB 61..309 96..353 519 43.1 Plus
CG11843-PA 316 CG11843-PA 61..309 96..353 519 43.1 Plus
CG11841-PA 319 CG11841-PA 59..311 89..354 477 39.7 Plus