Clone Sequence Records
BO06184.3prime Sequence
787 bp (598 high quality bases) assembled on 2005-12-02
> BO06184.3prime
ATGGTCTAGAAAGCTTGCATTGCCCCACACGATGCTCTCGATCCAGTCGG
TGTAGAGGTGGACTTTGGTATAGACACTCGGGAGTCCTTGGGAGCCACAA
ACTAATCCATATGAGACAATCCCTATGACCTGCTTCAGGCACGGATAGAG
CGGATGCTGGACGAATATAGGTCCGCCGGAGTCACCGTTGCAGGTGTCCG
CTTGGCTGGACATTGAGCCGGCACAGAACTGGGTGCGTGTATCGATGCTG
AAACGCAGGCGCTTCTGGCACACCTCGTCACTGAATCGCTGGAGGTTGAC
CTTCAGCAGGTGCGAGGACTTCACACCGTCCGCGGTAAATCCCCAGCCGG
CGGCTGTGACCTGCTGAACATCGTTGCCGCTGTCTGGCGGAAGGCATACC
GCTGCCACATGGTCGTTGAACTCAGCCTTCCGATCCAGTTCCACCAGGGC
AATATCGTTTTTAAAGCCCTGCTCTTCGTCTTCAGTATCATATCCAGGGT
GCACCACATAGTTGACCACCCGAAAGTCCTGAACCAGAGCATCATCGGTG
GTGCTGTTGTAGTCCAGCTCCCCCAGGCGAACTACAAATTTGGGCGAATC
AAAGTTTGGGTCCAGTCGCTCGGCCTTCGATTCATCCGTCTCCAGGCAAT
GCGCCGCAGTCAGTACGAATTTGGGATGCACCACGGATCCACCACAATCC
CAATTGATGTCCGACTTGGACTTGTTGGGCCGATGAGTGCCGATTAGGGC
CATGAAGGGGAACTCTTTACCGGATGCCTTTGTGCCG
BO06184.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-PA | 1083 | CG3700-RA | 312..1080 | 787..19 | 3820 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-RA | 1183 | CG3700-RA | 342..1110 | 787..19 | 3830 | 99.9 | Minus |
CG4927-RC | 1449 | CG4927-RC | 450..1109 | 678..22 | 355 | 71.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22895060..22895672 | 631..19 | 3065 | 100 | Minus |
2R | 25286936 | 2R | 22894841..22894996 | 787..632 | 765 | 99.4 | Minus |
2R | 25286936 | 2R | 16573599..16573814 | 237..22 | 315 | 76.4 | Minus |
2R | 25286936 | 2R | 16573258..16573333 | 575..500 | 185 | 82.9 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:05:06 has no hits.
BO06184.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:30 Download gff for
BO06184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-PA | 312..1083 | 16..787 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:12:34 Download gff for
BO06184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-PA | 312..1083 | 16..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:14 Download gff for
BO06184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 342..1118 | 11..787 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:32 Download gff for
BO06184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 342..1118 | 11..787 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:32 Download gff for
BO06184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22894841..22894996 | 632..787 | 99 | -> | Minus |
2R | 22895060..22895680 | 11..631 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:14 Download gff for
BO06184.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18782364..18782519 | 632..787 | 99 | -> | Minus |
arm_2R | 18782583..18783203 | 11..631 | 99 | | Minus |
BO06184.5prime Sequence
768 bp (752 high quality bases) assembled on 2005-12-02
> BO06184.5prime
GAAGTTATCAGTCGACATGTATGCGCTTCCGGGAATCCAGATTCTGTTGC
TGATTGCTTCAGTCAGCGTGGTGACCGAGTACTGCGACAATGGAACGGGC
GAGTGCAAGGAGCTGACGCCCTCCGACTGTCCAGTGATATTCTACAACCA
GCACCTGATCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTG
TCTGCTGTCCCATACCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAG
ACGAGGCCTTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGC
CTGCCAGTCCACGCCCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAG
AGTTTCCCTTCATGGCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAG
TCGGACATCAATTGGGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGT
ACTGACTGCGGCGCATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGAC
TGGACCCAAACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTG
GACTACAACAGCACCACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGT
CAACTATGTGGTGCACCCTGGATATGATACTGAAGACGAAGAGCAGGGCT
TTAAAAACGATATTGCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAAC
GACCATGTGGCAGCGGTATGCCTTCCGCCAGACAGCGGCAACGATGTTCA
GCAGGTCACAGCCGCCGG
BO06184.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-PA | 1083 | CG3700-RA | 1..752 | 17..768 | 3760 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-RA | 1183 | CG3700-RA | 31..782 | 17..768 | 3760 | 100 | Plus |
CG4927-RC | 1449 | CG4927-RC | 450..628 | 437..615 | 220 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22895060..22895344 | 484..768 | 1425 | 100 | Plus |
2R | 25286936 | 2R | 22894465..22894717 | 17..269 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 22894783..22894996 | 270..483 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 16573258..16573333 | 540..615 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:05:13 has no hits.
BO06184.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:31 Download gff for
BO06184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-PA | 1..752 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:12:36 Download gff for
BO06184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-PA | 1..752 | 17..768 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:19 Download gff for
BO06184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 29..782 | 13..768 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:44 Download gff for
BO06184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 29..782 | 13..768 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:44 Download gff for
BO06184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22894463..22894717 | 13..269 | 99 | -> | Plus |
2R | 22894783..22894996 | 270..483 | 100 | -> | Plus |
2R | 22895060..22895344 | 484..768 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:19 Download gff for
BO06184.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18781986..18782240 | 13..269 | 99 | -> | Plus |
arm_2R | 18782306..18782519 | 270..483 | 100 | -> | Plus |
arm_2R | 18782583..18782867 | 484..768 | 100 | | Plus |
BO06184.complete Sequence
1114 bp (1114 high quality bases) assembled on 2005-10-20
GenBank Submission: FJ630297
> BO06184.complete
GAAGTTATCAGTCGACATGTATGCGCTTCCGGGAATCCAGATTCTGTTGC
TGATTGCTTCAGTCAGCGTGGTGACCGAGTACTGCGACAATGGAACGGGC
GAGTGCAAGGAGCTGACGCCCTCCGACTGTCCAGTGATATTCTACAACCA
GCACCTGATCGGAGCCGAAGTCAAGTACTGCGACGAGTTCAACGACATTG
TCTGCTGTCCCATACCGCTGGATCACCAGAATCTGAAGCCAGCCGAACAG
ACGAGGCCTTTTGAGAAGCAGTGCAAGCAATACAACGAGGTCAGATCCGC
CTGCCAGTCCACGCCCTTCATCGTGGGCGGCACAAAGGCATCCGGTAAAG
AGTTTCCCTTCATGGCCCTAATCGGCACTCATCGGCCCAACAAGTCCAAG
TCGGACATCAATTGGGATTGTGGTGGATCCGTGGTGCATCCCAAATTCGT
ACTGACTGCGGCGCATTGCCTGGAGACGGATGAATCGAAGGCCGAGCGAC
TGGACCCAAACTTTGATTCGCCCAAATTTGTAGTTCGCCTGGGGGAGCTG
GACTACAACAGCACCACCGATGATGCTCTGGTTCAGGACTTTCGGGTGGT
CAACTATGTGGTGCACCCTGGATATGATACTGAAGACGAAGAGCAGGGCT
TTAAAAACGATATTGCCCTGGTGGAACTGGATCGGAAGGCTGAGTTCAAC
GACCATGTGGCAGCGGTATGCCTTCCGCCAGACAGCGGCAACGATGTTCA
GCAGGTCACAGCCGCCGGCTGGGGATTTACCGCGGACGGTGTGAAGTCCT
CGCACCTGCTGAAGGTCAACCTCCAGCGATTCAGTGACGAGGTGTGCCAG
AAGCGCCTGCGTTTCAGCATCGATACACGCACCCAGTTCTGTGCCGGCTC
AATGTCCAGCCAAGCGGACACCTGCAACGGTGACTCCGGCGGACCTATAT
TCGTCCAGCATCCGCTCTATCCGTGCCTGAAGCAGGTCATAGGGATTGTC
TCATATGGATTAGTTTGTGGCTCCCAAGGACTCCCGAGTGTCTATACCAA
AGTCCACCTCTACACCGACTGGATCGAGAGCATCGTGTGGGGCAATGCAA
GCTTTCTAGACCAT
BO06184.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:11:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-RA | 1083 | CG3700-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
CG4927-RC | 1089 | CG4927-PC | 868..1083 | 878..1093 | 315 | 76.4 | Plus |
CG4927-RC | 1089 | CG4927-PC | 424..602 | 437..615 | 220 | 74.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:11:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-RA | 1183 | CG3700-RA | 31..1110 | 17..1096 | 5400 | 100 | Plus |
CG4927-RC | 1449 | CG4927-RC | 894..1109 | 878..1093 | 315 | 76.4 | Plus |
CG4927-RC | 1449 | CG4927-RC | 450..628 | 437..615 | 220 | 74.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:11:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22895060..22895672 | 484..1096 | 3065 | 100 | Plus |
2R | 25286936 | 2R | 22894465..22894717 | 17..269 | 1265 | 100 | Plus |
2R | 25286936 | 2R | 22894783..22894996 | 270..483 | 1070 | 100 | Plus |
2R | 25286936 | 2R | 16573599..16573814 | 878..1093 | 315 | 76.4 | Plus |
2R | 25286936 | 2R | 16573258..16573333 | 540..615 | 185 | 82.9 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:11:07 has no hits.
BO06184.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:37 Download gff for
BO06184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RB | 1..1083 | 17..1099 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:26 Download gff for
BO06184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RB | 4664..5753 | 13..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:35:55 Download gff for
BO06184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 31..1110 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:37 Download gff for
BO06184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RB | 4664..5753 | 13..1104 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:05:19 Download gff for
BO06184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3700-RA | 31..1110 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:05:19 Download gff for
BO06184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22894465..22894717 | 17..269 | 100 | -> | Plus |
2R | 22894783..22894996 | 270..483 | 100 | -> | Plus |
2R | 22895060..22895672 | 484..1098 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:35:55 Download gff for
BO06184.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18781988..18782240 | 17..269 | 100 | -> | Plus |
arm_2R | 18782306..18782519 | 270..483 | 100 | -> | Plus |
arm_2R | 18782583..18783195 | 484..1098 | 99 | | Plus |
BO06184.pep Sequence
Translation from 16 to 1114
> BO06184.pep
MYALPGIQILLLIASVSVVTEYCDNGTGECKELTPSDCPVIFYNQHLIGA
EVKYCDEFNDIVCCPIPLDHQNLKPAEQTRPFEKQCKQYNEVRSACQSTP
FIVGGTKASGKEFPFMALIGTHRPNKSKSDINWDCGGSVVHPKFVLTAAH
CLETDESKAERLDPNFDSPKFVVRLGELDYNSTTDDALVQDFRVVNYVVH
PGYDTEDEEQGFKNDIALVELDRKAEFNDHVAAVCLPPDSGNDVQQVTAA
GWGFTADGVKSSHLLKVNLQRFSDEVCQKRLRFSIDTRTQFCAGSMSSQA
DTCNGDSGGPIFVQHPLYPCLKQVIGIVSYGLVCGSQGLPSVYTKVHLYT
DWIESIVWGNASFLDH
BO06184.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3700-PA | 360 | CG3700-PA | 1..360 | 1..360 | 1946 | 100 | Plus |
CG4927-PC | 362 | CG4927-PC | 7..361 | 9..359 | 1235 | 63.6 | Plus |
CG11843-PB | 316 | CG11843-PB | 61..309 | 96..353 | 519 | 43.1 | Plus |
CG11843-PA | 316 | CG11843-PA | 61..309 | 96..353 | 519 | 43.1 | Plus |
CG11841-PA | 319 | CG11841-PA | 59..311 | 89..354 | 477 | 39.7 | Plus |