Clone BO06187 Report

Search the DGRC for BO06187

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:61
Well:87
Vector:pDNR-Dual
Associated Gene/TranscriptCG6409-RA
Protein status:BO06187.pep: full length peptide match
Sequenced Size:1114

Clone Sequence Records

BO06187.3prime Sequence

791 bp (691 high quality bases) assembled on 2005-10-18

> BO06187.3prime
ATGGTCTAGAAAGCTTGCGGCCTTAGCTTTCTCCTTGCTTTCCTCGGAAC
TGGAAGTGGACTTATCCGCGTGCTTGTTCTTCTCGAAGAGCTCGGCCACG
GGAATGGGATGGGGGATGTGGAGATTGTGGATGGACGGAGTGGTGCTTTC
CAGCTCCGATTTGGTGGTGGATGGGAGATCGGTGGTGGTGGTGGCTTTGG
TTTGCGTGGGCACGGGAATATCGCGCTGGTGACGCTGTTCCGGCGCCTTT
CCACCGGCCAGAGATTCGATGGCCTTGTGGAGCTCCTGGGATCGCTGGGG
ATTGTGCTGGAGCGACTCACGGGCCTTCACGCTGTCGGGTTTCTCCACAG
TCTCGCGCTTTTCCTGCTTCTTGGGCAGCTCGGCGGTGTGGGCCACAGCG
GGCAGGGCATGGGGCAGCGAAAGATCCTCCACCTGAGGACGATCACCTGC
CTCATCCTTGTGGCCCTCCTCGTGGTGAGCTTCCCTCTTTTCCTTCTTGT
CCTCATGTGTTTCGGGAGCCTGCTTCACTTCCTCCTTATGTGGAGCTGCA
TCATCACCATGGTGGCCTTCCTCGTGGTGAGCCTCTCGCTTTTCCCTTTT
GGCATCATGAGCTTCGGGGGCCTGCTTTCCTTCCTCCTTATGAGGAGCCT
CATGGTCTTGGTGACCCTCCTCATGGTGAGCCTCTCTCTTTTCCTTCTTG
GCGTCATGGTCCTCGGGAGCTTGCTTCCCTTCCCTCCTTCTGGGGGACTG
CATCGTCACCATGGTGACCCTCCTCGTGGTGAGCTTTCCTC

BO06187.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-PA 1083 CG6409-RA 366..1080 733..19 3500 99.5 Minus
CG6409-PA 1083 CG6409-RA 314..367 786..733 245 98.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-RB 1544 CG6409-RB 677..1448 791..19 3765 99.2 Minus
CG6409-RA 1212 CG6409-RA 345..1116 791..19 3765 99.2 Minus
CG6409-RB 1544 CG6409-RB 675..905 690..460 435 79.9 Minus
CG6409-RA 1212 CG6409-RA 343..573 690..460 435 79.9 Minus
CG6409-RB 1544 CG6409-RB 786..1007 784..562 385 79.7 Minus
CG6409-RA 1212 CG6409-RA 454..675 784..562 385 79.7 Minus
CG6409-RB 1544 CG6409-RB 684..806 582..460 345 86.3 Minus
CG6409-RA 1212 CG6409-RA 352..474 582..460 345 86.3 Minus
CG6409-RB 1544 CG6409-RB 885..1007 784..661 310 84.8 Minus
CG6409-RA 1212 CG6409-RA 553..675 784..661 310 84.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10880795..10881566 19..791 3740 99.2 Plus
3L 28110227 3L 10881338..10881568 460..690 380 79.5 Plus
3L 28110227 3L 10881437..10881559 460..582 345 85.4 Plus
3L 28110227 3L 10881236..10881410 562..733 315 80 Plus
3L 28110227 3L 10881236..10881358 661..784 285 83.9 Plus
Blast to na_te.dros performed on 2015-02-11 16:15:47 has no hits.

BO06187.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:34 Download gff for BO06187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-PA 309..1083 18..791 98   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:12:40 Download gff for BO06187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-PA 309..1083 18..791 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:41 Download gff for BO06187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 345..1127 7..791 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:24 Download gff for BO06187.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 345..1127 7..791 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:24 Download gff for BO06187.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 10880784..10881566 7..791 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:41 Download gff for BO06187.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10873884..10874666 7..791 98   Plus

BO06187.5prime Sequence

862 bp (769 high quality bases) assembled on 2005-12-02

> BO06187.5prime
GAAGTTATCAGTCGACATGAAGTCGGTTATTATTCTCTTAGCCCTGGTGG
CTTTCTGCCACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTGAGGAG
CTCTCTAGGCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCCAAGCC
CACCGCCAAGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCGCCAGA
GGCGTAATGAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAACAGCTG
CATCACTCGCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCTCCGGC
TGGGCCACAGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGAGGGTC
ACCATGGTGACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAGCTCCC
GAGGACCATGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAGGAGGG
TCACCAAGACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGCCCCCG
AAGCTCATGATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGGAAGGC
CACCATGGTGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAGGCTCC
CGAAACACATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGAGGAGG
GCCACAAGGATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTTCGCTG
CCCCATGCCCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAGAAGCA
GGAAAAGCGCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCGTGAGT
CGCTCCAGCACAAATCCCAGCGATCCCAGGAGCTCCACAAGGTCATCGAA
TCTCTGGCCGGG

BO06187.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-PA 1083 CG6409-RA 1..845 17..861 4150 99.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:04:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-RB 1544 CG6409-RB 368..1213 16..861 4185 99.6 Plus
CG6409-RA 1212 CG6409-RA 36..881 16..861 4185 99.6 Plus
CG6409-RB 1544 CG6409-RB 675..905 425..655 465 80.8 Plus
CG6409-RB 1544 CG6409-RB 777..1007 323..553 465 80.8 Plus
CG6409-RA 1212 CG6409-RA 343..573 425..655 465 80.8 Plus
CG6409-RA 1212 CG6409-RA 445..675 323..553 465 80.8 Plus
CG6409-RB 1544 CG6409-RB 684..806 533..655 345 86.3 Plus
CG6409-RB 1544 CG6409-RB 885..1007 332..454 345 86.3 Plus
CG6409-RA 1212 CG6409-RA 352..474 533..655 345 86.3 Plus
CG6409-RA 1212 CG6409-RA 553..675 332..454 345 86.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:54
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10881030..10881862 861..29 4120 99.6 Minus
3L 28110227 3L 10881236..10881466 553..323 410 80.3 Minus
3L 28110227 3L 10881338..10881568 655..425 410 80.3 Minus
3L 28110227 3L 10881236..10881358 454..332 345 85.4 Minus
3L 28110227 3L 10881437..10881559 655..533 345 85.4 Minus
Blast to na_te.dros performed on 2015-02-13 06:04:55 has no hits.

BO06187.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:35 Download gff for BO06187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-PA 1..845 17..862 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:12:42 Download gff for BO06187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-PA 1..845 17..862 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:07 Download gff for BO06187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 31..881 11..862 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:12 Download gff for BO06187.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 31..881 11..862 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:12 Download gff for BO06187.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 10881028..10881862 29..862 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:07 Download gff for BO06187.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10874128..10874962 29..862 99 <- Minus

BO06187.complete Sequence

1114 bp (1114 high quality bases) assembled on 2006-08-17

GenBank Submission: FJ630298

> BO06187.complete
GAAGTTATCAGTCGACATGAAGTCGGTTATTATTCTCTTAGCCCTGGTGG
CTTTCTGCCACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTGAGGAG
CTCTCTAGGCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCCAAGCC
CACCGCCAAGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCGCCAGA
GGCGTAATGAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAACAGCTG
CATCACTCGCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCTCCGGC
TGGGCCACAGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGAGGGTC
ACCATGGTGACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAGCTCCC
GAGGACCATGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAGGAGGG
TCACCAAGACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGCCCCCG
AAGCTCATGATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGGAAGGC
CACCATGGTGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAGGCTCC
CGAAACACATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGAGGAGG
GCCACAAGGATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTTCGCTG
CCCCATGCCCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAGAAGCA
GGAAAAGCGCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCGTGAGT
CGCTCCAGCACAATCCCCAGCGATCCCAGGAGCTCCACAAGGCCATCGAA
TCTCTGGCCGGTGGAAAGGCGCCGGAACAGCGTCACCAGCGCGATATTCC
CGTGCCCACGCAAACCAAAGCCACCACCACCACCGATCTCCCATCCACCA
CCAAATCGGAGCTGGAAAGCACCACTCCGTCCATCCACAATCTCCACATC
CCCCATCCCATTCCCGTGGCCGAGCTCTTCGAGAAGAACAAGCACGCGGA
TAAGTCCACTTCCAGTTCCGAGGAAAGCAAGGAGAAAGCTAAGGCCGCAA
GCTTTCTAGACCAT

BO06187.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-RB 1083 CG6409-PB 1..1080 17..1096 5400 100 Plus
CG6409-RA 1083 CG6409-PA 1..1080 17..1096 5400 100 Plus
CG6409-RB 1083 CG6409-PB 307..537 425..655 410 80.3 Plus
CG6409-RB 1083 CG6409-PB 409..639 323..553 410 80.3 Plus
CG6409-RA 1083 CG6409-PA 307..537 425..655 410 80.3 Plus
CG6409-RA 1083 CG6409-PA 409..639 323..553 410 80.3 Plus
CG6409-RB 1083 CG6409-PB 316..438 533..655 345 85.4 Plus
CG6409-RB 1083 CG6409-PB 517..639 332..454 345 85.4 Plus
CG6409-RA 1083 CG6409-PA 316..438 533..655 345 85.4 Plus
CG6409-RA 1083 CG6409-PA 517..639 332..454 345 85.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-RB 1544 CG6409-RB 368..1448 16..1096 5405 100 Plus
CG6409-RA 1212 CG6409-RA 36..1116 16..1096 5405 100 Plus
CG6409-RB 1544 CG6409-RB 675..905 425..655 410 80.3 Plus
CG6409-RB 1544 CG6409-RB 777..1007 323..553 410 80.3 Plus
CG6409-RA 1212 CG6409-RA 343..573 425..655 410 80.3 Plus
CG6409-RA 1212 CG6409-RA 445..675 323..553 410 80.3 Plus
CG6409-RB 1544 CG6409-RB 885..1007 332..454 345 85.4 Plus
CG6409-RB 1544 CG6409-RB 684..806 533..655 345 85.4 Plus
CG6409-RA 1212 CG6409-RA 352..474 533..655 345 85.4 Plus
CG6409-RA 1212 CG6409-RA 553..675 332..454 345 85.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:59
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 10880795..10881862 1096..29 5340 100 Minus
3L 28110227 3L 10881236..10881466 553..323 410 80.3 Minus
3L 28110227 3L 10881338..10881568 655..425 410 80.3 Minus
3L 28110227 3L 10881236..10881358 454..332 345 85.4 Minus
3L 28110227 3L 10881437..10881559 655..533 345 85.4 Minus
Blast to na_te.dros performed on 2014-11-27 10:31:00 has no hits.

BO06187.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:22 Download gff for BO06187.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 1..1083 17..1097 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:26 Download gff for BO06187.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 28..1124 11..1108 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:37 Download gff for BO06187.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 37..1116 17..1098 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:22 Download gff for BO06187.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 28..1124 11..1108 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:52 Download gff for BO06187.complete
Subject Subject Range Query Range Percent Splice Strand
CG6409-RA 37..1116 17..1098 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:52 Download gff for BO06187.complete
Subject Subject Range Query Range Percent Splice Strand
3L 10880793..10881862 29..1098 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:37 Download gff for BO06187.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 10873893..10874962 29..1098 99 <- Minus

BO06187.pep Sequence

Translation from 16 to 1114

> BO06187.pep
MKSVIILLALVAFCHAAPLDVKESTSEELSRPSPISPDVLVDPKPTAKVV
LLKDAPVLNRQRRNEPKKPDSVEAHEQLHHSQPAVPIHDQKPSPAGPQDH
KRKREAHHEEGHHGDDAVPQKEEVKQAPEDHDAKKEKREAHHEEGHQDHE
APHKEEVKQAPEAHDAKREKREAHHEEGHHGDDAAPHKEEVKQAPETHED
KKEKREAHHEEGHKDEAGDRPQVEDLSLPHALPAVAHTAELPKKQEKRET
VEKPDSVKARESLQHNPQRSQELHKAIESLAGGKAPEQRHQRDIPVPTQT
KATTTTDLPSTTKSELESTTPSIHNLHIPHPIPVAELFEKNKHADKSTSS
SEESKEKAKAASFLDH

BO06187.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG6409-PB 360 CG6409-PB 1..360 1..360 1907 100 Plus
CG6409-PA 360 CG6409-PA 1..360 1..360 1907 100 Plus