Clone Sequence Records
BO06187.3prime Sequence
791 bp (691 high quality bases) assembled on 2005-10-18
> BO06187.3prime
ATGGTCTAGAAAGCTTGCGGCCTTAGCTTTCTCCTTGCTTTCCTCGGAAC
TGGAAGTGGACTTATCCGCGTGCTTGTTCTTCTCGAAGAGCTCGGCCACG
GGAATGGGATGGGGGATGTGGAGATTGTGGATGGACGGAGTGGTGCTTTC
CAGCTCCGATTTGGTGGTGGATGGGAGATCGGTGGTGGTGGTGGCTTTGG
TTTGCGTGGGCACGGGAATATCGCGCTGGTGACGCTGTTCCGGCGCCTTT
CCACCGGCCAGAGATTCGATGGCCTTGTGGAGCTCCTGGGATCGCTGGGG
ATTGTGCTGGAGCGACTCACGGGCCTTCACGCTGTCGGGTTTCTCCACAG
TCTCGCGCTTTTCCTGCTTCTTGGGCAGCTCGGCGGTGTGGGCCACAGCG
GGCAGGGCATGGGGCAGCGAAAGATCCTCCACCTGAGGACGATCACCTGC
CTCATCCTTGTGGCCCTCCTCGTGGTGAGCTTCCCTCTTTTCCTTCTTGT
CCTCATGTGTTTCGGGAGCCTGCTTCACTTCCTCCTTATGTGGAGCTGCA
TCATCACCATGGTGGCCTTCCTCGTGGTGAGCCTCTCGCTTTTCCCTTTT
GGCATCATGAGCTTCGGGGGCCTGCTTTCCTTCCTCCTTATGAGGAGCCT
CATGGTCTTGGTGACCCTCCTCATGGTGAGCCTCTCTCTTTTCCTTCTTG
GCGTCATGGTCCTCGGGAGCTTGCTTCCCTTCCCTCCTTCTGGGGGACTG
CATCGTCACCATGGTGACCCTCCTCGTGGTGAGCTTTCCTC
BO06187.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-PA | 1083 | CG6409-RA | 366..1080 | 733..19 | 3500 | 99.5 | Minus |
CG6409-PA | 1083 | CG6409-RA | 314..367 | 786..733 | 245 | 98.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:15:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-RB | 1544 | CG6409-RB | 677..1448 | 791..19 | 3765 | 99.2 | Minus |
CG6409-RA | 1212 | CG6409-RA | 345..1116 | 791..19 | 3765 | 99.2 | Minus |
CG6409-RB | 1544 | CG6409-RB | 675..905 | 690..460 | 435 | 79.9 | Minus |
CG6409-RA | 1212 | CG6409-RA | 343..573 | 690..460 | 435 | 79.9 | Minus |
CG6409-RB | 1544 | CG6409-RB | 786..1007 | 784..562 | 385 | 79.7 | Minus |
CG6409-RA | 1212 | CG6409-RA | 454..675 | 784..562 | 385 | 79.7 | Minus |
CG6409-RB | 1544 | CG6409-RB | 684..806 | 582..460 | 345 | 86.3 | Minus |
CG6409-RA | 1212 | CG6409-RA | 352..474 | 582..460 | 345 | 86.3 | Minus |
CG6409-RB | 1544 | CG6409-RB | 885..1007 | 784..661 | 310 | 84.8 | Minus |
CG6409-RA | 1212 | CG6409-RA | 553..675 | 784..661 | 310 | 84.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:15:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10880795..10881566 | 19..791 | 3740 | 99.2 | Plus |
3L | 28110227 | 3L | 10881338..10881568 | 460..690 | 380 | 79.5 | Plus |
3L | 28110227 | 3L | 10881437..10881559 | 460..582 | 345 | 85.4 | Plus |
3L | 28110227 | 3L | 10881236..10881410 | 562..733 | 315 | 80 | Plus |
3L | 28110227 | 3L | 10881236..10881358 | 661..784 | 285 | 83.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:15:47 has no hits.
BO06187.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:34 Download gff for
BO06187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-PA | 309..1083 | 18..791 | 98 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:12:40 Download gff for
BO06187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-PA | 309..1083 | 18..791 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:41 Download gff for
BO06187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 345..1127 | 7..791 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:24 Download gff for
BO06187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 345..1127 | 7..791 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:24 Download gff for
BO06187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10880784..10881566 | 7..791 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:41 Download gff for
BO06187.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10873884..10874666 | 7..791 | 98 | | Plus |
BO06187.5prime Sequence
862 bp (769 high quality bases) assembled on 2005-12-02
> BO06187.5prime
GAAGTTATCAGTCGACATGAAGTCGGTTATTATTCTCTTAGCCCTGGTGG
CTTTCTGCCACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTGAGGAG
CTCTCTAGGCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCCAAGCC
CACCGCCAAGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCGCCAGA
GGCGTAATGAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAACAGCTG
CATCACTCGCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCTCCGGC
TGGGCCACAGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGAGGGTC
ACCATGGTGACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAGCTCCC
GAGGACCATGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAGGAGGG
TCACCAAGACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGCCCCCG
AAGCTCATGATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGGAAGGC
CACCATGGTGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAGGCTCC
CGAAACACATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGAGGAGG
GCCACAAGGATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTTCGCTG
CCCCATGCCCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAGAAGCA
GGAAAAGCGCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCGTGAGT
CGCTCCAGCACAAATCCCAGCGATCCCAGGAGCTCCACAAGGTCATCGAA
TCTCTGGCCGGG
BO06187.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-PA | 1083 | CG6409-RA | 1..845 | 17..861 | 4150 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:04:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-RB | 1544 | CG6409-RB | 368..1213 | 16..861 | 4185 | 99.6 | Plus |
CG6409-RA | 1212 | CG6409-RA | 36..881 | 16..861 | 4185 | 99.6 | Plus |
CG6409-RB | 1544 | CG6409-RB | 675..905 | 425..655 | 465 | 80.8 | Plus |
CG6409-RB | 1544 | CG6409-RB | 777..1007 | 323..553 | 465 | 80.8 | Plus |
CG6409-RA | 1212 | CG6409-RA | 343..573 | 425..655 | 465 | 80.8 | Plus |
CG6409-RA | 1212 | CG6409-RA | 445..675 | 323..553 | 465 | 80.8 | Plus |
CG6409-RB | 1544 | CG6409-RB | 684..806 | 533..655 | 345 | 86.3 | Plus |
CG6409-RB | 1544 | CG6409-RB | 885..1007 | 332..454 | 345 | 86.3 | Plus |
CG6409-RA | 1212 | CG6409-RA | 352..474 | 533..655 | 345 | 86.3 | Plus |
CG6409-RA | 1212 | CG6409-RA | 553..675 | 332..454 | 345 | 86.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:04:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10881030..10881862 | 861..29 | 4120 | 99.6 | Minus |
3L | 28110227 | 3L | 10881236..10881466 | 553..323 | 410 | 80.3 | Minus |
3L | 28110227 | 3L | 10881338..10881568 | 655..425 | 410 | 80.3 | Minus |
3L | 28110227 | 3L | 10881236..10881358 | 454..332 | 345 | 85.4 | Minus |
3L | 28110227 | 3L | 10881437..10881559 | 655..533 | 345 | 85.4 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:04:55 has no hits.
BO06187.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:35 Download gff for
BO06187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-PA | 1..845 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:12:42 Download gff for
BO06187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-PA | 1..845 | 17..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:07 Download gff for
BO06187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 31..881 | 11..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:12 Download gff for
BO06187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 31..881 | 11..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:12 Download gff for
BO06187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10881028..10881862 | 29..862 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:07 Download gff for
BO06187.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10874128..10874962 | 29..862 | 99 | <- | Minus |
BO06187.complete Sequence
1114 bp (1114 high quality bases) assembled on 2006-08-17
GenBank Submission: FJ630298
> BO06187.complete
GAAGTTATCAGTCGACATGAAGTCGGTTATTATTCTCTTAGCCCTGGTGG
CTTTCTGCCACGCAGCACCTCTGGATGTCAAGGAGTCTACCTCTGAGGAG
CTCTCTAGGCCCAGTCCCATCAGCCCCGATGTGCTCGTTGATCCCAAGCC
CACCGCCAAGGTAGTCTTGCTGAAGGATGCTCCCGTCCTGAATCGCCAGA
GGCGTAATGAACCCAAGAAGCCCGACAGCGTGGAGGCCCACGAACAGCTG
CATCACTCGCAGCCGGCCGTTCCTATTCATGACCAGAAGCCTTCTCCGGC
TGGGCCACAGGACCACAAGCGCAAGAGGGAAGCTCACCACGAGGAGGGTC
ACCATGGTGACGATGCAGTGCCCCAGAAGGAGGAAGTGAAGCAAGCTCCC
GAGGACCATGACGCCAAGAAGGAAAAGAGAGAGGCTCACCATGAGGAGGG
TCACCAAGACCATGAGGCTCCTCATAAGGAGGAAGTGAAGCAGGCCCCCG
AAGCTCATGATGCCAAAAGGGAAAAGCGAGAGGCTCACCACGAGGAAGGC
CACCATGGTGATGATGCAGCTCCACATAAGGAGGAAGTGAAGCAGGCTCC
CGAAACACATGAGGACAAGAAGGAAAAGAGGGAAGCTCACCACGAGGAGG
GCCACAAGGATGAGGCAGGTGATCGTCCTCAGGTGGAGGATCTTTCGCTG
CCCCATGCCCTGCCCGCTGTGGCCCACACCGCCGAGCTGCCCAAGAAGCA
GGAAAAGCGCGAGACTGTGGAGAAACCCGACAGCGTGAAGGCCCGTGAGT
CGCTCCAGCACAATCCCCAGCGATCCCAGGAGCTCCACAAGGCCATCGAA
TCTCTGGCCGGTGGAAAGGCGCCGGAACAGCGTCACCAGCGCGATATTCC
CGTGCCCACGCAAACCAAAGCCACCACCACCACCGATCTCCCATCCACCA
CCAAATCGGAGCTGGAAAGCACCACTCCGTCCATCCACAATCTCCACATC
CCCCATCCCATTCCCGTGGCCGAGCTCTTCGAGAAGAACAAGCACGCGGA
TAAGTCCACTTCCAGTTCCGAGGAAAGCAAGGAGAAAGCTAAGGCCGCAA
GCTTTCTAGACCAT
BO06187.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:31:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-RB | 1083 | CG6409-PB | 1..1080 | 17..1096 | 5400 | 100 | Plus |
CG6409-RA | 1083 | CG6409-PA | 1..1080 | 17..1096 | 5400 | 100 | Plus |
CG6409-RB | 1083 | CG6409-PB | 307..537 | 425..655 | 410 | 80.3 | Plus |
CG6409-RB | 1083 | CG6409-PB | 409..639 | 323..553 | 410 | 80.3 | Plus |
CG6409-RA | 1083 | CG6409-PA | 307..537 | 425..655 | 410 | 80.3 | Plus |
CG6409-RA | 1083 | CG6409-PA | 409..639 | 323..553 | 410 | 80.3 | Plus |
CG6409-RB | 1083 | CG6409-PB | 316..438 | 533..655 | 345 | 85.4 | Plus |
CG6409-RB | 1083 | CG6409-PB | 517..639 | 332..454 | 345 | 85.4 | Plus |
CG6409-RA | 1083 | CG6409-PA | 316..438 | 533..655 | 345 | 85.4 | Plus |
CG6409-RA | 1083 | CG6409-PA | 517..639 | 332..454 | 345 | 85.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:31:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-RB | 1544 | CG6409-RB | 368..1448 | 16..1096 | 5405 | 100 | Plus |
CG6409-RA | 1212 | CG6409-RA | 36..1116 | 16..1096 | 5405 | 100 | Plus |
CG6409-RB | 1544 | CG6409-RB | 675..905 | 425..655 | 410 | 80.3 | Plus |
CG6409-RB | 1544 | CG6409-RB | 777..1007 | 323..553 | 410 | 80.3 | Plus |
CG6409-RA | 1212 | CG6409-RA | 343..573 | 425..655 | 410 | 80.3 | Plus |
CG6409-RA | 1212 | CG6409-RA | 445..675 | 323..553 | 410 | 80.3 | Plus |
CG6409-RB | 1544 | CG6409-RB | 885..1007 | 332..454 | 345 | 85.4 | Plus |
CG6409-RB | 1544 | CG6409-RB | 684..806 | 533..655 | 345 | 85.4 | Plus |
CG6409-RA | 1212 | CG6409-RA | 352..474 | 533..655 | 345 | 85.4 | Plus |
CG6409-RA | 1212 | CG6409-RA | 553..675 | 332..454 | 345 | 85.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:30:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 10880795..10881862 | 1096..29 | 5340 | 100 | Minus |
3L | 28110227 | 3L | 10881236..10881466 | 553..323 | 410 | 80.3 | Minus |
3L | 28110227 | 3L | 10881338..10881568 | 655..425 | 410 | 80.3 | Minus |
3L | 28110227 | 3L | 10881236..10881358 | 454..332 | 345 | 85.4 | Minus |
3L | 28110227 | 3L | 10881437..10881559 | 655..533 | 345 | 85.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:31:00 has no hits.
BO06187.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:03:22 Download gff for
BO06187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 1..1083 | 17..1097 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:22:26 Download gff for
BO06187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 28..1124 | 11..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:37 Download gff for
BO06187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 37..1116 | 17..1098 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:03:22 Download gff for
BO06187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 28..1124 | 11..1108 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:52 Download gff for
BO06187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6409-RA | 37..1116 | 17..1098 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:52 Download gff for
BO06187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 10880793..10881862 | 29..1098 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:37 Download gff for
BO06187.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 10873893..10874962 | 29..1098 | 99 | <- | Minus |
BO06187.pep Sequence
Translation from 16 to 1114
> BO06187.pep
MKSVIILLALVAFCHAAPLDVKESTSEELSRPSPISPDVLVDPKPTAKVV
LLKDAPVLNRQRRNEPKKPDSVEAHEQLHHSQPAVPIHDQKPSPAGPQDH
KRKREAHHEEGHHGDDAVPQKEEVKQAPEDHDAKKEKREAHHEEGHQDHE
APHKEEVKQAPEAHDAKREKREAHHEEGHHGDDAAPHKEEVKQAPETHED
KKEKREAHHEEGHKDEAGDRPQVEDLSLPHALPAVAHTAELPKKQEKRET
VEKPDSVKARESLQHNPQRSQELHKAIESLAGGKAPEQRHQRDIPVPTQT
KATTTTDLPSTTKSELESTTPSIHNLHIPHPIPVAELFEKNKHADKSTSS
SEESKEKAKAASFLDH
BO06187.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 20:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6409-PB | 360 | CG6409-PB | 1..360 | 1..360 | 1907 | 100 | Plus |
CG6409-PA | 360 | CG6409-PA | 1..360 | 1..360 | 1907 | 100 | Plus |