Clone Sequence Records
BO06201.3prime Sequence
824 bp (757 high quality bases) assembled on 2005-12-03
> BO06201.3prime
ATGGTCTAGAAAGCTTGCATCTAATTCGATTCTATTCTCTAAGAATAGGC
TGCTCGTGTGCATCTTTGATTCCTTAATTTTTAAGTGCGAGCCCAGCAAA
TCGTCCATGGTGATGCGGACGTTGTTGCGATCAAGCGCTGTAGCTGACGG
ATCTCTGGACGTGATGAGCTGCCTCATTCGGTAAACTGAAGCATTCCGGC
ACATTTCCCGCAGGTCTGAGCCCGAGAAGCCATTTGTGAGCTTGGACAAG
CGATTCAAGTCGACATCCTGACTTACTTCCTCCGATTGGAGGATCAGCTT
CAGGATGTCTTTTCGTTGGGTCTCCGAGGGCAGACCAATGTGGAATTGGG
CTGGCATGCGGCGCACAATGGCCTTGTCTAAATCCTGCGGCCTGTTCGTG
GCACCCATCACAATCACCGTCGAGTTGGCGTTCGTGCTGAGGCCATCCCA
CAGCATCATAAACTGGGTCTTCATCATGGCGGTAGCCTCGTGGTCGTTCA
TGTTTCGAGATCGCAAAAATGAGTCTATTTCGTCAATAAAAATAATGCAT
GGCTCGATTCGCGATGCAAGCGAGAAGACAGCAGAAGTCAATTTCTGGGA
TTCCCCGTACCACTTGTCGGTAAGAATGGCGACGTCCAAGTTGATAAAGC
GCATTCCCGCCTCTTTTGCCGTCGCCTTCGCTATCAGCGTCTTTCCACAG
CCCGGTGGTCCATGGAGCAGGACGCCTTTGGGCGCCTGCCACAGCTTCGA
ATGCTTGAAGAGATCCTTGTGCTGGATTGGCAGCACCACCGATTCCCGGA
GCTCCTGAATGACTGAATCCAGAC
BO06201.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5395-PA | 1110 | nmd-RA | 302..1107 | 824..19 | 4030 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmd-RC | 1719 | CG5395-RC | 413..1218 | 824..19 | 4030 | 100 | Minus |
nmd-RB | 1172 | CG5395-RB | 285..1090 | 824..19 | 4030 | 100 | Minus |
nmd-RA | 1300 | CG5395-RA | 413..1218 | 824..19 | 4030 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:00:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10302674..10303479 | 19..824 | 4030 | 100 | Plus |
2L | 23513712 | 2L | 14766376..14766791 | 750..335 | 325 | 71.9 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:00:39 has no hits.
BO06201.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:55 Download gff for
BO06201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-PA | 302..1110 | 15..824 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:10 Download gff for
BO06201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5395-PA | 302..1110 | 15..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:58 Download gff for
BO06201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 413..1224 | 12..824 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:38:35 Download gff for
BO06201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 413..1224 | 12..824 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:38:35 Download gff for
BO06201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10302668..10303479 | 12..824 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:58 Download gff for
BO06201.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10302668..10303479 | 12..824 | 99 | | Plus |
BO06201.5prime Sequence
818 bp (761 high quality bases) assembled on 2005-12-03
> BO06201.5prime
GAAGTTATCAGTCGACATGGACAACTTCGGACTGGGCGGATCGGATCTAA
GCAAGGGGCAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGCCTCGCTG
ATCACATATTATTCGGTGAAATGGATGATGAACCAGATGGATCCGACCAG
TAAAAACAAGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTTAAGAGGC
TAGCCGAGCAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAGCGACTAC
GAGCTTATGATTGCGTCACATCTTGTTGTTCCCGCCGACATAACAGTCAG
TTGGGCCGATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTCCGGGAAT
CGGTGGTGCTGCCAATCCAGCACAAGGATCTCTTCAAGCATTCGAAGCTG
TGGCAGGCGCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCTGTGGAAA
GACGCTGATAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGCTTTATCA
ACTTGGACGTCGCCATTCTTACCGACAAGTGGTACGGGGAATCCCAGAAA
TTGACTTCTGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCATGCATTAT
TTTTATTGACGAAATAGACTCATTTTTGCGATCTCGAAACATGAACGACC
ACGAGGCTACCGCCATGATGAAGACCCAGTTTATGATGCTGTGGGATGGC
CTCAGCACGAACGCCAACTCGACGGTGATTGTGATGGGTGCCACGAACAG
GCCGCANGATTTAGACNAGGCCATTGTGCGCCGCATGCCAGCCCAATTCC
ACATTGGTCTGCCCCTCG
BO06201.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5395-PA | 1110 | nmd-RA | 1..798 | 17..814 | 3952 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmd-RC | 1719 | CG5395-RC | 110..909 | 15..814 | 3978 | 99.8 | Plus |
nmd-RA | 1300 | CG5395-RA | 110..909 | 15..814 | 3978 | 99.8 | Plus |
nmd-RB | 1172 | CG5395-RB | 164..781 | 197..814 | 3068 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10302983..10303600 | 814..197 | 3068 | 99.7 | Minus |
2L | 23513712 | 2L | 10303654..10303838 | 199..15 | 925 | 100 | Minus |
2L | 23513712 | 2L | 14766281..14766683 | 297..699 | 320 | 72 | Plus |
Blast to na_te.dros performed on 2015-02-13 00:59:40 has no hits.
BO06201.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:56 Download gff for
BO06201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-PA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:11 Download gff for
BO06201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5395-PA | 1..801 | 17..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:23 Download gff for
BO06201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 105..912 | 9..818 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:59 Download gff for
BO06201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 105..912 | 9..818 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:59 Download gff for
BO06201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10303655..10303843 | 9..198 | 98 | | Minus |
2L | 10302980..10303598 | 199..818 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:23 Download gff for
BO06201.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10302980..10303598 | 199..818 | 99 | <- | Minus |
arm_2L | 10303655..10303843 | 9..198 | 98 | | Minus |
BO06201.complete Sequence
1141 bp (1141 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630300
> BO06201.complete
GAAGTTATCAGTCGACATGGACAACTTCGGACTGGGCGGATCGGATCTAA
GCAAGGGGCAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGCCTCGCTG
ATCACATATTATTCGGTGAAATGGATGATGAACCAGATGGATCCGACCAG
TAAAAACAAGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTTAAGAGGC
TAGCCGAGCAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAGCGACTAC
GAGCTTATGATTGCGTCACATCTTGTTGTTCCCGCCGACATAACAGTCAG
TTGGGCCGATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTCCGGGAAT
CGGTGGTGCTGCCAATCCAGCACAAGGATCTCTTCAAGCATTCGAAGCTG
TGGCAGGCGCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCTGTGGAAA
GACGCTGATAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGCTTTATCA
ACTTGGACGTCGCCATTCTTACCGACAAGTGGTACGGGGAATCCCAGAAA
TTGACTTCTGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCATGCATTAT
TTTTATTGACGAAATAGACTCATTTTTGCGATCTCGAAACATGAACGACC
ACGAGGCTACCGCCATGATGAAGACCCAGTTTATGATGCTGTGGGATGGC
CTCAGCACGAACGCCAACTCGACGGTGATTGTGATGGGTGCCACGAACAG
GCCGCAGGATTTAGACAAGGCCATTGTGCGCCGCATGCCAGCCCAATTCC
ACATTGGTCTGCCCTCGGAGACCCAACGAAAAGACATCCTGAAGCTGATC
CTCCAATCGGAGGAAGTAAGTCAGGATGTCGACTTGAATCGCTTGTCCAA
GCTCACAAATGGCTTCTCGGGCTCAGACCTGCGGGAAATGTGCCGGAATG
CTTCAGTTTACCGAATGAGGCAGCTCATCACGTCCAGAGATCCGTCAGCT
ACAGCGCTTGATCGCAACAACGTCCGCATCACCATGGACGATTTGCTGGG
CTCGCACTTAAAAATTAAGGAATCAAAGATGCACACGAGCAGCCTATTCT
TAGAGAATAGAATCGAATTAGATGCAAGCTTTCTAGACCAT
BO06201.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmd-RC | 1110 | CG5395-PC | 1..1107 | 17..1123 | 5535 | 100 | Plus |
nmd-RA | 1110 | CG5395-PA | 1..1107 | 17..1123 | 5535 | 100 | Plus |
nmd-RB | 870 | CG5395-PB | 1..867 | 257..1123 | 4335 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmd-RC | 1719 | CG5395-RC | 110..1218 | 15..1123 | 5545 | 100 | Plus |
nmd-RA | 1300 | CG5395-RA | 110..1218 | 15..1123 | 5545 | 100 | Plus |
nmd-RB | 1172 | CG5395-RB | 164..1090 | 197..1123 | 4635 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10302674..10303600 | 1123..197 | 4635 | 100 | Minus |
2L | 23513712 | 2L | 10303654..10303838 | 199..15 | 925 | 100 | Minus |
2L | 23513712 | 2L | 14766281..14766791 | 297..807 | 335 | 71 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:29:29 has no hits.
BO06201.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:23 Download gff for
BO06201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 1..1110 | 17..1127 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:07 Download gff for
BO06201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 103..1222 | 9..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:15 Download gff for
BO06201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 112..1218 | 17..1125 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:23 Download gff for
BO06201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 103..1222 | 9..1130 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:12 Download gff for
BO06201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
nmd-RA | 112..1218 | 17..1125 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:12 Download gff for
BO06201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10302672..10303598 | 199..1125 | 99 | <- | Minus |
2L | 10303655..10303836 | 17..198 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:15 Download gff for
BO06201.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10302672..10303598 | 199..1125 | 99 | <- | Minus |
arm_2L | 10303655..10303836 | 17..198 | 100 | | Minus |
BO06201.pep Sequence
Translation from 16 to 1141
> BO06201.pep
MDNFGLGGSDLSKGQIFQVLVRLSVASLITYYSVKWMMNQMDPTSKNKKK
AKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIA
GLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAK
ATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEI
DSFLRSRNMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLD
KAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGF
SGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVRITMDDLLGSHLKI
KESKMHTSSLFLENRIELDASFLDH
BO06201.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
nmd-PC | 369 | CG5395-PC | 1..369 | 1..369 | 1869 | 100 | Plus |
nmd-PA | 369 | CG5395-PA | 1..369 | 1..369 | 1869 | 100 | Plus |
nmd-PB | 289 | CG5395-PB | 1..289 | 81..369 | 1466 | 100 | Plus |
CG4701-PA | 384 | CG4701-PA | 10..384 | 15..369 | 1145 | 58.9 | Plus |
CG3326-PB | 523 | CG3326-PB | 247..492 | 94..342 | 484 | 39.2 | Plus |