Clone BO06201 Report

Search the DGRC for BO06201

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:1
Vector:pDNR-Dual
Associated Gene/Transcriptnmd-RA
Protein status:BO06201.pep: validated full length
Sequenced Size:1141

Clone Sequence Records

BO06201.3prime Sequence

824 bp (757 high quality bases) assembled on 2005-12-03

> BO06201.3prime
ATGGTCTAGAAAGCTTGCATCTAATTCGATTCTATTCTCTAAGAATAGGC
TGCTCGTGTGCATCTTTGATTCCTTAATTTTTAAGTGCGAGCCCAGCAAA
TCGTCCATGGTGATGCGGACGTTGTTGCGATCAAGCGCTGTAGCTGACGG
ATCTCTGGACGTGATGAGCTGCCTCATTCGGTAAACTGAAGCATTCCGGC
ACATTTCCCGCAGGTCTGAGCCCGAGAAGCCATTTGTGAGCTTGGACAAG
CGATTCAAGTCGACATCCTGACTTACTTCCTCCGATTGGAGGATCAGCTT
CAGGATGTCTTTTCGTTGGGTCTCCGAGGGCAGACCAATGTGGAATTGGG
CTGGCATGCGGCGCACAATGGCCTTGTCTAAATCCTGCGGCCTGTTCGTG
GCACCCATCACAATCACCGTCGAGTTGGCGTTCGTGCTGAGGCCATCCCA
CAGCATCATAAACTGGGTCTTCATCATGGCGGTAGCCTCGTGGTCGTTCA
TGTTTCGAGATCGCAAAAATGAGTCTATTTCGTCAATAAAAATAATGCAT
GGCTCGATTCGCGATGCAAGCGAGAAGACAGCAGAAGTCAATTTCTGGGA
TTCCCCGTACCACTTGTCGGTAAGAATGGCGACGTCCAAGTTGATAAAGC
GCATTCCCGCCTCTTTTGCCGTCGCCTTCGCTATCAGCGTCTTTCCACAG
CCCGGTGGTCCATGGAGCAGGACGCCTTTGGGCGCCTGCCACAGCTTCGA
ATGCTTGAAGAGATCCTTGTGCTGGATTGGCAGCACCACCGATTCCCGGA
GCTCCTGAATGACTGAATCCAGAC

BO06201.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG5395-PA 1110 nmd-RA 302..1107 824..19 4030 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
nmd-RC 1719 CG5395-RC 413..1218 824..19 4030 100 Minus
nmd-RB 1172 CG5395-RB 285..1090 824..19 4030 100 Minus
nmd-RA 1300 CG5395-RA 413..1218 824..19 4030 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:00:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10302674..10303479 19..824 4030 100 Plus
2L 23513712 2L 14766376..14766791 750..335 325 71.9 Minus
Blast to na_te.dros performed on 2015-02-11 05:00:39 has no hits.

BO06201.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:55 Download gff for BO06201.3prime
Subject Subject Range Query Range Percent Splice Strand
nmd-PA 302..1110 15..824 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:10 Download gff for BO06201.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5395-PA 302..1110 15..824 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:58 Download gff for BO06201.3prime
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 413..1224 12..824 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:38:35 Download gff for BO06201.3prime
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 413..1224 12..824 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:38:35 Download gff for BO06201.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10302668..10303479 12..824 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:58 Download gff for BO06201.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10302668..10303479 12..824 99   Plus

BO06201.5prime Sequence

818 bp (761 high quality bases) assembled on 2005-12-03

> BO06201.5prime
GAAGTTATCAGTCGACATGGACAACTTCGGACTGGGCGGATCGGATCTAA
GCAAGGGGCAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGCCTCGCTG
ATCACATATTATTCGGTGAAATGGATGATGAACCAGATGGATCCGACCAG
TAAAAACAAGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTTAAGAGGC
TAGCCGAGCAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAGCGACTAC
GAGCTTATGATTGCGTCACATCTTGTTGTTCCCGCCGACATAACAGTCAG
TTGGGCCGATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTCCGGGAAT
CGGTGGTGCTGCCAATCCAGCACAAGGATCTCTTCAAGCATTCGAAGCTG
TGGCAGGCGCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCTGTGGAAA
GACGCTGATAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGCTTTATCA
ACTTGGACGTCGCCATTCTTACCGACAAGTGGTACGGGGAATCCCAGAAA
TTGACTTCTGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCATGCATTAT
TTTTATTGACGAAATAGACTCATTTTTGCGATCTCGAAACATGAACGACC
ACGAGGCTACCGCCATGATGAAGACCCAGTTTATGATGCTGTGGGATGGC
CTCAGCACGAACGCCAACTCGACGGTGATTGTGATGGGTGCCACGAACAG
GCCGCANGATTTAGACNAGGCCATTGTGCGCCGCATGCCAGCCCAATTCC
ACATTGGTCTGCCCCTCG

BO06201.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5395-PA 1110 nmd-RA 1..798 17..814 3952 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 00:59:43
Subject Length Description Subject Range Query Range Score Percent Strand
nmd-RC 1719 CG5395-RC 110..909 15..814 3978 99.8 Plus
nmd-RA 1300 CG5395-RA 110..909 15..814 3978 99.8 Plus
nmd-RB 1172 CG5395-RB 164..781 197..814 3068 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 00:59:37
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10302983..10303600 814..197 3068 99.7 Minus
2L 23513712 2L 10303654..10303838 199..15 925 100 Minus
2L 23513712 2L 14766281..14766683 297..699 320 72 Plus
Blast to na_te.dros performed on 2015-02-13 00:59:40 has no hits.

BO06201.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:42:56 Download gff for BO06201.5prime
Subject Subject Range Query Range Percent Splice Strand
nmd-PA 1..801 17..818 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:11 Download gff for BO06201.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5395-PA 1..801 17..818 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:23 Download gff for BO06201.5prime
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 105..912 9..818 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:01:59 Download gff for BO06201.5prime
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 105..912 9..818 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:01:59 Download gff for BO06201.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10303655..10303843 9..198 98   Minus
2L 10302980..10303598 199..818 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:23 Download gff for BO06201.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10302980..10303598 199..818 99 <- Minus
arm_2L 10303655..10303843 9..198 98   Minus

BO06201.complete Sequence

1141 bp (1141 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630300

> BO06201.complete
GAAGTTATCAGTCGACATGGACAACTTCGGACTGGGCGGATCGGATCTAA
GCAAGGGGCAGATATTCCAGGTACTGGTTCGCCTGTCTGTGGCCTCGCTG
ATCACATATTATTCGGTGAAATGGATGATGAACCAGATGGATCCGACCAG
TAAAAACAAGAAAAAGGCCAAAGTTCTGGCTGAGGAGCAGCTTAAGAGGC
TAGCCGAGCAGGAGGGCTTCAAGCTAAGAGGGCAAGAGTTTAGCGACTAC
GAGCTTATGATTGCGTCACATCTTGTTGTTCCCGCCGACATAACAGTCAG
TTGGGCCGATATCGCCGGTCTGGATTCAGTCATTCAGGAGCTCCGGGAAT
CGGTGGTGCTGCCAATCCAGCACAAGGATCTCTTCAAGCATTCGAAGCTG
TGGCAGGCGCCCAAAGGCGTCCTGCTCCATGGACCACCGGGCTGTGGAAA
GACGCTGATAGCGAAGGCGACGGCAAAAGAGGCGGGAATGCGCTTTATCA
ACTTGGACGTCGCCATTCTTACCGACAAGTGGTACGGGGAATCCCAGAAA
TTGACTTCTGCTGTCTTCTCGCTTGCATCGCGAATCGAGCCATGCATTAT
TTTTATTGACGAAATAGACTCATTTTTGCGATCTCGAAACATGAACGACC
ACGAGGCTACCGCCATGATGAAGACCCAGTTTATGATGCTGTGGGATGGC
CTCAGCACGAACGCCAACTCGACGGTGATTGTGATGGGTGCCACGAACAG
GCCGCAGGATTTAGACAAGGCCATTGTGCGCCGCATGCCAGCCCAATTCC
ACATTGGTCTGCCCTCGGAGACCCAACGAAAAGACATCCTGAAGCTGATC
CTCCAATCGGAGGAAGTAAGTCAGGATGTCGACTTGAATCGCTTGTCCAA
GCTCACAAATGGCTTCTCGGGCTCAGACCTGCGGGAAATGTGCCGGAATG
CTTCAGTTTACCGAATGAGGCAGCTCATCACGTCCAGAGATCCGTCAGCT
ACAGCGCTTGATCGCAACAACGTCCGCATCACCATGGACGATTTGCTGGG
CTCGCACTTAAAAATTAAGGAATCAAAGATGCACACGAGCAGCCTATTCT
TAGAGAATAGAATCGAATTAGATGCAAGCTTTCTAGACCAT

BO06201.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:29:30
Subject Length Description Subject Range Query Range Score Percent Strand
nmd-RC 1110 CG5395-PC 1..1107 17..1123 5535 100 Plus
nmd-RA 1110 CG5395-PA 1..1107 17..1123 5535 100 Plus
nmd-RB 870 CG5395-PB 1..867 257..1123 4335 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
nmd-RC 1719 CG5395-RC 110..1218 15..1123 5545 100 Plus
nmd-RA 1300 CG5395-RA 110..1218 15..1123 5545 100 Plus
nmd-RB 1172 CG5395-RB 164..1090 197..1123 4635 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:29:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10302674..10303600 1123..197 4635 100 Minus
2L 23513712 2L 10303654..10303838 199..15 925 100 Minus
2L 23513712 2L 14766281..14766791 297..807 335 71 Plus
Blast to na_te.dros performed on 2014-11-27 10:29:29 has no hits.

BO06201.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:23 Download gff for BO06201.complete
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 1..1110 17..1127 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:07 Download gff for BO06201.complete
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 103..1222 9..1130 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:39:15 Download gff for BO06201.complete
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 112..1218 17..1125 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:23 Download gff for BO06201.complete
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 103..1222 9..1130 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:23:12 Download gff for BO06201.complete
Subject Subject Range Query Range Percent Splice Strand
nmd-RA 112..1218 17..1125 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:23:12 Download gff for BO06201.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10302672..10303598 199..1125 99 <- Minus
2L 10303655..10303836 17..198 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:39:15 Download gff for BO06201.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10302672..10303598 199..1125 99 <- Minus
arm_2L 10303655..10303836 17..198 100   Minus

BO06201.pep Sequence

Translation from 16 to 1141

> BO06201.pep
MDNFGLGGSDLSKGQIFQVLVRLSVASLITYYSVKWMMNQMDPTSKNKKK
AKVLAEEQLKRLAEQEGFKLRGQEFSDYELMIASHLVVPADITVSWADIA
GLDSVIQELRESVVLPIQHKDLFKHSKLWQAPKGVLLHGPPGCGKTLIAK
ATAKEAGMRFINLDVAILTDKWYGESQKLTSAVFSLASRIEPCIIFIDEI
DSFLRSRNMNDHEATAMMKTQFMMLWDGLSTNANSTVIVMGATNRPQDLD
KAIVRRMPAQFHIGLPSETQRKDILKLILQSEEVSQDVDLNRLSKLTNGF
SGSDLREMCRNASVYRMRQLITSRDPSATALDRNNVRITMDDLLGSHLKI
KESKMHTSSLFLENRIELDASFLDH

BO06201.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:45
Subject Length Description Subject Range Query Range Score Percent Strand
nmd-PC 369 CG5395-PC 1..369 1..369 1869 100 Plus
nmd-PA 369 CG5395-PA 1..369 1..369 1869 100 Plus
nmd-PB 289 CG5395-PB 1..289 81..369 1466 100 Plus
CG4701-PA 384 CG4701-PA 10..384 15..369 1145 58.9 Plus
CG3326-PB 523 CG3326-PB 247..492 94..342 484 39.2 Plus