Clone BO06206 Report

Search the DGRC for BO06206

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:6
Vector:pDNR-Dual
Associated Gene/Transcriptwol-RA
Protein status:BO06206.pep: validated full length
Sequenced Size:1012

Clone Sequence Records

BO06206.3prime Sequence

911 bp (747 high quality bases) assembled on 2005-12-03

> BO06206.3prime
ATGGTCTAGAAAGCTTGCCTTTTCCTTCTTCTGTATGGAGGCAATCCGCC
AGGCGCCCACCAAATATCGCACCCAGATCATGAACAAATCCCTGCCCATT
TGCAGCCACGACCAAAATGGTGTCAGTTTCGAACCATCGATCTCCGTCCA
TCGAACGGCAACCTCGGACATTGGTAGCTTCAAATTCTCAGCGAGGTACA
GCAGCTCAACATCAAAGGCCCAGCGCTCCACATGCAGACTGGTGAAGAGT
TTCCTGGCCGTCGTTCGGGTGAACAGCTTGAAGCCACACTGGGTATCGCG
AATGGAGCGCACGGCAAACAGCCAGACGAGGAAATGAAAGCCGTGCATCA
AAATTGTTCTGAAGAAACTCCTTGTTGCAATCGCATCGTTCTCCAGATGT
GCTCTCGATCCAATGGCAATGCCATCGTCTCGCCATTCGGGAGCTAATTG
CTTGAGGGCCACCTCCAGTTTATCGTAGTCGGGAAACTTGGTGGCTCCAT
CCGCATCAGCGAAGAGCAGATTACGACCCCGTGCACTTAGCATACCCATG
CGAACGGCACCTCCTTTCCCACGATTTTCGATGAGTTCCAGCACGCGTAC
CTTTTCTGCTCCGTGCTTTTTCGAGTAACCCAAGGCGACGGATACGGTGG
CATCCTGACTGCCGTCACTGACCACGATGACCTCGTATGTGAAATTGGGA
GTGCCAGCAGATTTCTGTTCCAGAAAGGCCAAGCACTCGTCCAGCATAGA
AGGCAAGCGCTGCTCCTCATTGTAAGCTGGTACGATGACACTGAGCTCCA
AACTTGGCGAGTCCTCGAGACTGGGAAAAGTCACTGTTTTAATGGTGTGC
GGGTCCAGGAAGGTCTCCTCATCCTTGTGCCGCTTGATGTTGGGATAGGG
CTTCGTCTTGT

BO06206.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7870-PA 981 CG7870-RA 86..978 911..19 4465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:27
Subject Length Description Subject Range Query Range Score Percent Strand
wol-RA 1335 CG7870-RA 248..1140 911..19 4465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8301936..8302332 359..755 1985 100 Plus
2L 23513712 2L 8301540..8301882 19..361 1715 100 Plus
2L 23513712 2L 8302524..8302679 756..911 780 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:05:26 has no hits.

BO06206.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:02 Download gff for BO06206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7870-PA 86..981 16..911 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:20 Download gff for BO06206.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7870-PA 86..981 16..911 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:27 Download gff for BO06206.3prime
Subject Subject Range Query Range Percent Splice Strand
wol-RA 248..1140 19..911 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:56 Download gff for BO06206.3prime
Subject Subject Range Query Range Percent Splice Strand
wol-RA 248..1140 19..911 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:56 Download gff for BO06206.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 8301936..8302332 359..755 100 <- Plus
2L 8302524..8302679 756..911 100   Plus
2L 8301540..8301879 19..358 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:27 Download gff for BO06206.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8301540..8301879 19..358 100 <- Plus
arm_2L 8301936..8302332 359..755 100 <- Plus
arm_2L 8302524..8302679 756..911 100   Plus

BO06206.5prime Sequence

965 bp (823 high quality bases) assembled on 2005-12-03

> BO06206.5prime
GAAGTTATCAGTCGACATGTGGACCTGCCTCTGCCAGCTCTGTTTCTATC
TACTCTCGACGCTTGCAGTCGCTGCGCTGTCGATTGCGGCTCTGGTGCTC
TACAAGACGAAGCCCTATCCCAACATCAAGCGGCACAAGGATGAGGAGAC
CTTCCTGGACCCGCACACCATTAAAACAGTGACTTTTCCCAGTCTCGAGG
ACTCGCCAAGTTTGGAGCTCAGTGTCATCGTACCAGCTTACAATGAGGAG
CAGCGCTTGCCTTCTATGCTGGACGAGTGCTTGGCCTTTCTGGAACAGAA
ATCTGCTGGCACTCCCAATTTCACATACGAGGTCATCGTGGTCAGTGACG
GCAGTCAGGATGCCACCGTATCCGTCGCCTTGGGTTACTCGAAAAAGCAC
GGAGCAGAAAAGGTACGCGTGCTGGAACTCATCGAAAATCGTGGGAAAGG
AGGTGCCGTTCGCATGGGTATGCTAAGTGCACGGGGTCGTAATCTGCTCT
TCGCTGATGCGGATGGAGCCACCAAGTTTCCCGACTACGATAAACTGGAG
GTGGCCCTCAAGCAATTAGCTCCCGAATGGCGAGACGATGGCATTGCCAT
TGGATCGAGAGCACATCTGGAGAACGATGCGATTGCAACAAGGAGTTTCT
TCAGAACAATTTTGATGCACGGCTTTCATTTCCTCGTCTGGCTGTTTGCC
GTGCGCTCCATTCGCGATACCCAGTGTGGCTTCAAGCTGTTCACCCGAAC
GACGGCCAGGAAACTCTTCACCAGTCTGCATGTGGAGCGCTGGGCCTTTG
ATGTTGAGCTGCTGTACCTCGCTGAGAAATTGAAGCTACCAATGTCCGAG
GTTGCCGTTCGATGGACGGAGATCGATGGTTCGAAACTGACACCATTTTG
GTCGTGGCTGCAAATGGGCAGGGATTTGTTCATGATCTGGGTGCGATATT
TGGTGGGGCGCCTGG

BO06206.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG7870-PA 981 CG7870-RA 1..941 17..957 4680 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:18
Subject Length Description Subject Range Query Range Score Percent Strand
wol-RA 1335 CG7870-RA 163..1110 17..965 4705 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:16
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8301936..8302332 654..258 1985 100 Minus
2L 23513712 2L 8301577..8301882 957..652 1515 99.7 Minus
2L 23513712 2L 8302524..8302699 257..82 880 100 Minus
2L 23513712 2L 8302758..8302823 82..17 330 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:05:17 has no hits.

BO06206.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:03 Download gff for BO06206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7870-PA 1..948 17..965 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:21 Download gff for BO06206.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7870-PA 1..948 17..965 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:12 Download gff for BO06206.5prime
Subject Subject Range Query Range Percent Splice Strand
wol-RA 163..1110 17..965 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:49 Download gff for BO06206.5prime
Subject Subject Range Query Range Percent Splice Strand
wol-RA 163..1110 17..965 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:49 Download gff for BO06206.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8302524..8302698 83..257 100 <- Minus
2L 8302758..8302823 17..82 100   Minus
2L 8301570..8301879 655..965 99 <- Minus
2L 8301936..8302332 258..654 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:12 Download gff for BO06206.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8301570..8301879 655..965 99 <- Minus
arm_2L 8301936..8302332 258..654 100 <- Minus
arm_2L 8302524..8302698 83..257 100 <- Minus
arm_2L 8302758..8302823 17..82 100   Minus

BO06206.complete Sequence

1012 bp (1012 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630301

> BO06206.complete
GAAGTTATCAGTCGACATGTGGACCTGCCTCTGCCAGCTCTGTTTCTATC
TACTCTCGACGCTTGCAGTCGCTGCGCTGTCGATTGCGGCTCTGGTGCTC
TACAAGACGAAGCCCTATCCCAACATCAAGCGGCACAAGGATGAGGAGAC
CTTCCTGGACCCGCACACCATTAAAACAGTGACTTTTCCCAGTCTCGAGG
ACTCGCCAAGTTTGGAGCTCAGTGTCATCGTACCAGCTTACAATGAGGAG
CAGCGCTTGCCTTCTATGCTGGACGAGTGCTTGGCCTTTCTGGAACAGAA
ATCTGCTGGCACTCCCAATTTCACATACGAGGTCATCGTGGTCAGTGACG
GCAGTCAGGATGCCACCGTATCCGTCGCCTTGGGTTACTCGAAAAAGCAC
GGAGCAGAAAAGGTACGCGTGCTGGAACTCATCGAAAATCGTGGGAAAGG
AGGTGCCGTTCGCATGGGTATGCTAAGTGCACGGGGTCGTAATCTGCTCT
TCGCTGATGCGGATGGAGCCACCAAGTTTCCCGACTACGATAAACTGGAG
GTGGCCCTCAAGCAATTAGCTCCCGAATGGCGAGACGATGGCATTGCCAT
TGGATCGAGAGCACATCTGGAGAACGATGCGATTGCAACAAGGAGTTTCT
TCAGAACAATTTTGATGCACGGCTTTCATTTCCTCGTCTGGCTGTTTGCC
GTGCGCTCCATTCGCGATACCCAGTGTGGCTTCAAGCTGTTCACCCGAAC
GACGGCCAGGAAACTCTTCACCAGTCTGCATGTGGAGCGCTGGGCCTTTG
ATGTTGAGCTGCTGTACCTCGCTGAGAATTTGAAGCTACCAATGTCCGAG
GTTGCCGTTCGATGGACGGAGATCGATGGTTCGAAACTGACACCATTTTG
GTCGTGGCTGCAAATGGGCAGGGATTTGTTCATGATCTGGGTGCGATATT
TGGTGGGCGCCTGGCGGATTGCCTCCATACAGAAGAAGGAAAAGGCAAGC
TTTCTAGACCAT

BO06206.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:44
Subject Length Description Subject Range Query Range Score Percent Strand
wol-RA 981 CG7870-PA 1..978 17..994 4890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:45
Subject Length Description Subject Range Query Range Score Percent Strand
wol-RA 1335 CG7870-RA 163..1140 17..994 4890 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8301936..8302332 654..258 1985 100 Minus
2L 23513712 2L 8301540..8301882 994..652 1715 100 Minus
2L 23513712 2L 8302524..8302699 257..82 880 100 Minus
2L 23513712 2L 8302758..8302823 82..17 330 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:29:43 has no hits.

BO06206.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:25 Download gff for BO06206.complete
Subject Subject Range Query Range Percent Splice Strand
CG7870-RA 1..981 17..997 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:08 Download gff for BO06206.complete
Subject Subject Range Query Range Percent Splice Strand
CG7870-RA 161..1138 17..994 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:40 Download gff for BO06206.complete
Subject Subject Range Query Range Percent Splice Strand
wol-RA 163..1140 17..996 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:25 Download gff for BO06206.complete
Subject Subject Range Query Range Percent Splice Strand
CG7870-RA 161..1138 17..994 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:54 Download gff for BO06206.complete
Subject Subject Range Query Range Percent Splice Strand
wol-RA 163..1140 17..996 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:54 Download gff for BO06206.complete
Subject Subject Range Query Range Percent Splice Strand
2L 8301537..8301879 655..996 99 <- Minus
2L 8301936..8302332 258..654 100 <- Minus
2L 8302524..8302698 83..257 100 <- Minus
2L 8302758..8302823 17..82 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:40 Download gff for BO06206.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8301537..8301879 655..996 99 <- Minus
arm_2L 8301936..8302332 258..654 100 <- Minus
arm_2L 8302524..8302698 83..257 100 <- Minus
arm_2L 8302758..8302823 17..82 100   Minus

BO06206.pep Sequence

Translation from 16 to 1012

> BO06206.pep
MWTCLCQLCFYLLSTLAVAALSIAALVLYKTKPYPNIKRHKDEETFLDPH
TIKTVTFPSLEDSPSLELSVIVPAYNEEQRLPSMLDECLAFLEQKSAGTP
NFTYEVIVVSDGSQDATVSVALGYSKKHGAEKVRVLELIENRGKGGAVRM
GMLSARGRNLLFADADGATKFPDYDKLEVALKQLAPEWRDDGIAIGSRAH
LENDAIATRSFFRTILMHGFHFLVWLFAVRSIRDTQCGFKLFTRTTARKL
FTSLHVERWAFDVELLYLAENLKLPMSEVAVRWTEIDGSKLTPFWSWLQM
GRDLFMIWVRYLVGAWRIASIQKKEKASFLDH

BO06206.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:44
Subject Length Description Subject Range Query Range Score Percent Strand
wol-PA 326 CG7870-PA 1..326 1..326 1698 100 Plus
CG10166-PA 241 CG10166-PA 9..214 69..285 165 26.4 Plus