Clone Sequence Records
BO06206.3prime Sequence
911 bp (747 high quality bases) assembled on 2005-12-03
> BO06206.3prime
ATGGTCTAGAAAGCTTGCCTTTTCCTTCTTCTGTATGGAGGCAATCCGCC
AGGCGCCCACCAAATATCGCACCCAGATCATGAACAAATCCCTGCCCATT
TGCAGCCACGACCAAAATGGTGTCAGTTTCGAACCATCGATCTCCGTCCA
TCGAACGGCAACCTCGGACATTGGTAGCTTCAAATTCTCAGCGAGGTACA
GCAGCTCAACATCAAAGGCCCAGCGCTCCACATGCAGACTGGTGAAGAGT
TTCCTGGCCGTCGTTCGGGTGAACAGCTTGAAGCCACACTGGGTATCGCG
AATGGAGCGCACGGCAAACAGCCAGACGAGGAAATGAAAGCCGTGCATCA
AAATTGTTCTGAAGAAACTCCTTGTTGCAATCGCATCGTTCTCCAGATGT
GCTCTCGATCCAATGGCAATGCCATCGTCTCGCCATTCGGGAGCTAATTG
CTTGAGGGCCACCTCCAGTTTATCGTAGTCGGGAAACTTGGTGGCTCCAT
CCGCATCAGCGAAGAGCAGATTACGACCCCGTGCACTTAGCATACCCATG
CGAACGGCACCTCCTTTCCCACGATTTTCGATGAGTTCCAGCACGCGTAC
CTTTTCTGCTCCGTGCTTTTTCGAGTAACCCAAGGCGACGGATACGGTGG
CATCCTGACTGCCGTCACTGACCACGATGACCTCGTATGTGAAATTGGGA
GTGCCAGCAGATTTCTGTTCCAGAAAGGCCAAGCACTCGTCCAGCATAGA
AGGCAAGCGCTGCTCCTCATTGTAAGCTGGTACGATGACACTGAGCTCCA
AACTTGGCGAGTCCTCGAGACTGGGAAAAGTCACTGTTTTAATGGTGTGC
GGGTCCAGGAAGGTCTCCTCATCCTTGTGCCGCTTGATGTTGGGATAGGG
CTTCGTCTTGT
BO06206.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7870-PA | 981 | CG7870-RA | 86..978 | 911..19 | 4465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wol-RA | 1335 | CG7870-RA | 248..1140 | 911..19 | 4465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8301936..8302332 | 359..755 | 1985 | 100 | Plus |
2L | 23513712 | 2L | 8301540..8301882 | 19..361 | 1715 | 100 | Plus |
2L | 23513712 | 2L | 8302524..8302679 | 756..911 | 780 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:05:26 has no hits.
BO06206.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:02 Download gff for
BO06206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-PA | 86..981 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:20 Download gff for
BO06206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-PA | 86..981 | 16..911 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:27 Download gff for
BO06206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 248..1140 | 19..911 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:24:56 Download gff for
BO06206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 248..1140 | 19..911 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:24:56 Download gff for
BO06206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8301936..8302332 | 359..755 | 100 | <- | Plus |
2L | 8302524..8302679 | 756..911 | 100 | | Plus |
2L | 8301540..8301879 | 19..358 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:27 Download gff for
BO06206.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8301540..8301879 | 19..358 | 100 | <- | Plus |
arm_2L | 8301936..8302332 | 359..755 | 100 | <- | Plus |
arm_2L | 8302524..8302679 | 756..911 | 100 | | Plus |
BO06206.5prime Sequence
965 bp (823 high quality bases) assembled on 2005-12-03
> BO06206.5prime
GAAGTTATCAGTCGACATGTGGACCTGCCTCTGCCAGCTCTGTTTCTATC
TACTCTCGACGCTTGCAGTCGCTGCGCTGTCGATTGCGGCTCTGGTGCTC
TACAAGACGAAGCCCTATCCCAACATCAAGCGGCACAAGGATGAGGAGAC
CTTCCTGGACCCGCACACCATTAAAACAGTGACTTTTCCCAGTCTCGAGG
ACTCGCCAAGTTTGGAGCTCAGTGTCATCGTACCAGCTTACAATGAGGAG
CAGCGCTTGCCTTCTATGCTGGACGAGTGCTTGGCCTTTCTGGAACAGAA
ATCTGCTGGCACTCCCAATTTCACATACGAGGTCATCGTGGTCAGTGACG
GCAGTCAGGATGCCACCGTATCCGTCGCCTTGGGTTACTCGAAAAAGCAC
GGAGCAGAAAAGGTACGCGTGCTGGAACTCATCGAAAATCGTGGGAAAGG
AGGTGCCGTTCGCATGGGTATGCTAAGTGCACGGGGTCGTAATCTGCTCT
TCGCTGATGCGGATGGAGCCACCAAGTTTCCCGACTACGATAAACTGGAG
GTGGCCCTCAAGCAATTAGCTCCCGAATGGCGAGACGATGGCATTGCCAT
TGGATCGAGAGCACATCTGGAGAACGATGCGATTGCAACAAGGAGTTTCT
TCAGAACAATTTTGATGCACGGCTTTCATTTCCTCGTCTGGCTGTTTGCC
GTGCGCTCCATTCGCGATACCCAGTGTGGCTTCAAGCTGTTCACCCGAAC
GACGGCCAGGAAACTCTTCACCAGTCTGCATGTGGAGCGCTGGGCCTTTG
ATGTTGAGCTGCTGTACCTCGCTGAGAAATTGAAGCTACCAATGTCCGAG
GTTGCCGTTCGATGGACGGAGATCGATGGTTCGAAACTGACACCATTTTG
GTCGTGGCTGCAAATGGGCAGGGATTTGTTCATGATCTGGGTGCGATATT
TGGTGGGGCGCCTGG
BO06206.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7870-PA | 981 | CG7870-RA | 1..941 | 17..957 | 4680 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wol-RA | 1335 | CG7870-RA | 163..1110 | 17..965 | 4705 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8301936..8302332 | 654..258 | 1985 | 100 | Minus |
2L | 23513712 | 2L | 8301577..8301882 | 957..652 | 1515 | 99.7 | Minus |
2L | 23513712 | 2L | 8302524..8302699 | 257..82 | 880 | 100 | Minus |
2L | 23513712 | 2L | 8302758..8302823 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:05:17 has no hits.
BO06206.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:03 Download gff for
BO06206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-PA | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:21 Download gff for
BO06206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-PA | 1..948 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:12 Download gff for
BO06206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 163..1110 | 17..965 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:02:49 Download gff for
BO06206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 163..1110 | 17..965 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:02:49 Download gff for
BO06206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8302524..8302698 | 83..257 | 100 | <- | Minus |
2L | 8302758..8302823 | 17..82 | 100 | | Minus |
2L | 8301570..8301879 | 655..965 | 99 | <- | Minus |
2L | 8301936..8302332 | 258..654 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:12 Download gff for
BO06206.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8301570..8301879 | 655..965 | 99 | <- | Minus |
arm_2L | 8301936..8302332 | 258..654 | 100 | <- | Minus |
arm_2L | 8302524..8302698 | 83..257 | 100 | <- | Minus |
arm_2L | 8302758..8302823 | 17..82 | 100 | | Minus |
BO06206.complete Sequence
1012 bp (1012 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630301
> BO06206.complete
GAAGTTATCAGTCGACATGTGGACCTGCCTCTGCCAGCTCTGTTTCTATC
TACTCTCGACGCTTGCAGTCGCTGCGCTGTCGATTGCGGCTCTGGTGCTC
TACAAGACGAAGCCCTATCCCAACATCAAGCGGCACAAGGATGAGGAGAC
CTTCCTGGACCCGCACACCATTAAAACAGTGACTTTTCCCAGTCTCGAGG
ACTCGCCAAGTTTGGAGCTCAGTGTCATCGTACCAGCTTACAATGAGGAG
CAGCGCTTGCCTTCTATGCTGGACGAGTGCTTGGCCTTTCTGGAACAGAA
ATCTGCTGGCACTCCCAATTTCACATACGAGGTCATCGTGGTCAGTGACG
GCAGTCAGGATGCCACCGTATCCGTCGCCTTGGGTTACTCGAAAAAGCAC
GGAGCAGAAAAGGTACGCGTGCTGGAACTCATCGAAAATCGTGGGAAAGG
AGGTGCCGTTCGCATGGGTATGCTAAGTGCACGGGGTCGTAATCTGCTCT
TCGCTGATGCGGATGGAGCCACCAAGTTTCCCGACTACGATAAACTGGAG
GTGGCCCTCAAGCAATTAGCTCCCGAATGGCGAGACGATGGCATTGCCAT
TGGATCGAGAGCACATCTGGAGAACGATGCGATTGCAACAAGGAGTTTCT
TCAGAACAATTTTGATGCACGGCTTTCATTTCCTCGTCTGGCTGTTTGCC
GTGCGCTCCATTCGCGATACCCAGTGTGGCTTCAAGCTGTTCACCCGAAC
GACGGCCAGGAAACTCTTCACCAGTCTGCATGTGGAGCGCTGGGCCTTTG
ATGTTGAGCTGCTGTACCTCGCTGAGAATTTGAAGCTACCAATGTCCGAG
GTTGCCGTTCGATGGACGGAGATCGATGGTTCGAAACTGACACCATTTTG
GTCGTGGCTGCAAATGGGCAGGGATTTGTTCATGATCTGGGTGCGATATT
TGGTGGGCGCCTGGCGGATTGCCTCCATACAGAAGAAGGAAAAGGCAAGC
TTTCTAGACCAT
BO06206.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:29:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wol-RA | 981 | CG7870-PA | 1..978 | 17..994 | 4890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:29:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wol-RA | 1335 | CG7870-RA | 163..1140 | 17..994 | 4890 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:29:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8301936..8302332 | 654..258 | 1985 | 100 | Minus |
2L | 23513712 | 2L | 8301540..8301882 | 994..652 | 1715 | 100 | Minus |
2L | 23513712 | 2L | 8302524..8302699 | 257..82 | 880 | 100 | Minus |
2L | 23513712 | 2L | 8302758..8302823 | 82..17 | 330 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:29:43 has no hits.
BO06206.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:25 Download gff for
BO06206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-RA | 1..981 | 17..997 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:08 Download gff for
BO06206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-RA | 161..1138 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:44:40 Download gff for
BO06206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 163..1140 | 17..996 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:25 Download gff for
BO06206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7870-RA | 161..1138 | 17..994 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:12:54 Download gff for
BO06206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
wol-RA | 163..1140 | 17..996 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:12:54 Download gff for
BO06206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8301537..8301879 | 655..996 | 99 | <- | Minus |
2L | 8301936..8302332 | 258..654 | 100 | <- | Minus |
2L | 8302524..8302698 | 83..257 | 100 | <- | Minus |
2L | 8302758..8302823 | 17..82 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:44:40 Download gff for
BO06206.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8301537..8301879 | 655..996 | 99 | <- | Minus |
arm_2L | 8301936..8302332 | 258..654 | 100 | <- | Minus |
arm_2L | 8302524..8302698 | 83..257 | 100 | <- | Minus |
arm_2L | 8302758..8302823 | 17..82 | 100 | | Minus |
BO06206.pep Sequence
Translation from 16 to 1012
> BO06206.pep
MWTCLCQLCFYLLSTLAVAALSIAALVLYKTKPYPNIKRHKDEETFLDPH
TIKTVTFPSLEDSPSLELSVIVPAYNEEQRLPSMLDECLAFLEQKSAGTP
NFTYEVIVVSDGSQDATVSVALGYSKKHGAEKVRVLELIENRGKGGAVRM
GMLSARGRNLLFADADGATKFPDYDKLEVALKQLAPEWRDDGIAIGSRAH
LENDAIATRSFFRTILMHGFHFLVWLFAVRSIRDTQCGFKLFTRTTARKL
FTSLHVERWAFDVELLYLAENLKLPMSEVAVRWTEIDGSKLTPFWSWLQM
GRDLFMIWVRYLVGAWRIASIQKKEKASFLDH
BO06206.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
wol-PA | 326 | CG7870-PA | 1..326 | 1..326 | 1698 | 100 | Plus |
CG10166-PA | 241 | CG10166-PA | 9..214 | 69..285 | 165 | 26.4 | Plus |