Clone Sequence Records
BO06208.3prime Sequence
881 bp (641 high quality bases) assembled on 2005-12-03
> BO06208.3prime
ATGGTCTAGAAAGCTTGCGTCTAAAGCGATTGTCAGAAGGGCATCTTCTG
GGTGAACCTCTAGCAAAGCCTTGGCGCCATCGTTGAAGGGGAACGAAATG
CTGCCATCTATAACCAGGTTGGCATCGATGCAATGCGACTTGACAAACAC
GGTCTGCACAAAATCGCGCTCCTTAAAAGTCTTTGGCGAAGGCCACACGC
CCACGCAGATTTGCTCCCGGATGGAATAGCAGAGGCGCGGGTCGTCTGGC
GCGAAGAGCAGGCCTTGGTTGTACCGCTGGGCGATCTCCTCTGCATTTTG
TCGTAGCATCATCACGTTCTTTGAATCGCCGTCGGGCAGGGAACGCAACA
GGTCGTCCACATCTCGGCTTGTGATGCGATTGATGCTGGTGTGCCAGGAT
GTTGAGCCCGTGCCCGTGCTGACGCACAGTCCGGAGCATTTGGTCTTGTT
CACCACGTCCTGGTGGTCCAGCACCAGTTGCAAGTGGGACACTCGGGCCG
ATAGATGCTCGCCAATAAATACCTCGTTCAAAGCCAAGTAAGGAAGAACA
CGTTTCATCTTGGCCTTGTACTTGTAGGCCATGTCCTGGTCCAGCATTTC
GGGTGCGGTGCTGACCTGCTCCATCTTGACCTCCGTGTGGCGGAAAAGGT
CAGTCGGCTCCGGAATATTGCCGTTGCTACCAAGCATCGTAGTCCGCACC
CTCGAGCGATGCATCCACTTGAAATCTCCGCTCTTGATGCGGGAAACGGC
GTCGGCCGGATTATCCGAGTAGTGCTTGGGCAGCATGAGTCGGCCCTCCG
AGTGAAGCGGATCCGAGTTGAAGCCCACGATCGGCGTCTTCTGCTGGCTG
AGCGCGAAGAGCGGACTGGCGCGTCCGGCGG
BO06208.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8080-PA | 1242 | CG8080-RA | 377..1239 | 881..19 | 4315 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:01:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8080-RE | 1402 | CG8080-RE | 393..1255 | 881..19 | 4315 | 100 | Minus |
| CG8080-RD | 1749 | CG8080-RD | 740..1602 | 881..19 | 4315 | 100 | Minus |
| CG8080-RC | 1793 | CG8080-RC | 784..1646 | 881..19 | 4315 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9090083..9090487 | 120..524 | 2025 | 100 | Plus |
| 2R | 25286936 | 2R | 9090540..9090749 | 520..729 | 1050 | 100 | Plus |
| 2R | 25286936 | 2R | 9090810..9090962 | 729..881 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 9089921..9090021 | 19..119 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:01:58 has no hits.
BO06208.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:06 Download gff for
BO06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-PA | 377..1242 | 16..881 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:25 Download gff for
BO06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-PA | 377..1242 | 16..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:17:59 Download gff for
BO06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RC | 784..1650 | 15..881 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:38:50 Download gff for
BO06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RC | 784..1650 | 15..881 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:38:50 Download gff for
BO06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9090811..9090962 | 730..881 | 100 | | Plus |
| 2R | 9089917..9090021 | 15..119 | 98 | <- | Plus |
| 2R | 9090083..9090485 | 120..522 | 100 | <- | Plus |
| 2R | 9090543..9090749 | 523..729 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:17:59 Download gff for
BO06208.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4977422..4977526 | 15..119 | 98 | <- | Plus |
| arm_2R | 4977588..4977990 | 120..522 | 100 | <- | Plus |
| arm_2R | 4978048..4978254 | 523..729 | 100 | <- | Plus |
| arm_2R | 4978316..4978467 | 730..881 | 100 | | Plus |
BO06208.5prime Sequence
791 bp (672 high quality bases) assembled on 2005-12-03
> BO06208.5prime
GAAGTTATCAGTCGACATGTTGAAGTCGAAGCAGTTGCTCCAACAGTTTT
CCAAAGAGTACGCTAAATATACGCCGACCAACTTCAAGCTAAAGCGGGCC
CTGGTCGTCACCAAGCTGTCCCGCTATGAGTTCGAGCAGCTACGCCACCC
GGAACTGTCTCCGGATCAGCTCCAGCAAAAGCTCCGTGACCGGGGCACCG
ACGTGGAGATGGTCCTCCATCTGCACAAGGTGCACAAGGACTTCGAGCGG
CGGGTCGTGCAGAGCTTCCAGGACGTCGGCTGCGAGGTGAAGTTGTCCAG
CAGACTTGAATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGCTGGGCGG
ACGTCATCGTGCCGGTGGGCGGCGATGGCACTTTCCTTCTCTCCGCCGGA
CGCGCCAGTCCGCTCTTCGCGCTCAGCCAGCAGAAGACGCCGATCGTGGG
CTTCAACTCGGATCCGCTTCACTCGGAGGGCCGACTCATGCTGCCCAAGC
ACTACTCGGATAATCCGGCCGACGCCGTTTCCCGCATCAAGAGCGGAGAT
TTCAAGTGGATGCATCGCTCGAGGGTGCGGACTACGATGCTTGGTAGCAA
CGGCAATATTCCGGAGCCGACTGACCTTTTCCGCCACACGGAGGTCAAGA
TGGAGCAGGTCAGCACCGCACCCGAAATGCTGGACCAGGACATGGCCTAC
AAGTACAAGGCCAAGATGAAACGTGTTCTTCCTTACTTGGCTTTGAACGA
GGTATTTATTGGCGAGCATCTATCGGCCCGAGTGTCCCACT
BO06208.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:36:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8080-PA | 1242 | CG8080-RA | 1..775 | 17..791 | 3875 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:34:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8080-RA | 1808 | CG8080-RA | 422..1197 | 16..791 | 3880 | 100 | Plus |
| CG8080-RB | 1708 | CG8080-RB | 334..1097 | 16..791 | 3690 | 98.5 | Plus |
| CG8080-RE | 1402 | CG8080-RE | 57..791 | 57..791 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:34:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9091407..9091655 | 303..55 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 9090810..9091056 | 545..299 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 9090540..9090749 | 754..545 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 9090446..9090487 | 791..750 | 210 | 100 | Minus |
| 2R | 25286936 | 2R | 9092432..9092472 | 56..16 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:34:30 has no hits.
BO06208.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:07 Download gff for
BO06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:26 Download gff for
BO06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-PA | 1..775 | 17..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:14 Download gff for
BO06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 422..1197 | 16..791 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:35 Download gff for
BO06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 422..1197 | 16..791 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:35 Download gff for
BO06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9090811..9091051 | 304..544 | 100 | <- | Minus |
| 2R | 9091407..9091653 | 57..303 | 100 | <- | Minus |
| 2R | 9092432..9092472 | 16..56 | 100 | | Minus |
| 2R | 9090446..9090485 | 752..791 | 100 | <- | Minus |
| 2R | 9090543..9090749 | 545..751 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:14 Download gff for
BO06208.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4978912..4979158 | 57..303 | 100 | <- | Minus |
| arm_2R | 4979937..4979977 | 16..56 | 100 | | Minus |
| arm_2R | 4978048..4978254 | 545..751 | 100 | <- | Minus |
| arm_2R | 4978316..4978556 | 304..544 | 100 | <- | Minus |
| arm_2R | 4977951..4977990 | 752..791 | 100 | <- | Minus |
BO06208.complete Sequence
1273 bp (1273 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630302
> BO06208.complete
GAAGTTATCAGTCGACATGTTGAAGTCGAAGCAGTTGCTCCAACAGTTTT
CCAAAGAGTACGCTAAATATACGCCGACCAACTTCAAGCTAAAGCGGGCC
CTGGTCGTCACCAAGCTGTCCCGCTATGAGTTCGAGCAGCTACGCCACCC
GGAACTGTCTCCGGATCAGCTCCAGCAAAAGCTCCGTGACCGGGGCACCG
ACGTGGAGATGGTCCTCCATCTGCACAAGGTGCACAAGGACTTCGAGCGG
CGGGTCGTGCAGAGCTTCCAGGACGTCGGCTGCGAGGTGAAGTTGTCCAG
CAGACTTGAATTTAGAAGCTCGTTGAGCAAGGACGTCATGAGCTGGGCGG
ACGTCATCGTGCCGGTGGGCGGCGATGGCACTTTCCTTCTCTCCGCCGGA
CGCGCCAGTCCGCTCTTCGCGCTCAGCCAGCAGAAGACGCCGATCGTGGG
CTTCAACTCGGATCCGCTTCACTCGGAGGGCCGACTCATGCTGCCCAAGC
ACTACTCGGATAATCCGGCCGACGCCGTTTCCCGCATCAAGAGCGGAGAT
TTCAAGTGGATGCATCGCTCGAGGGTGCGGACTACGATGCTTGGTAGCAA
CGGCAATATTCCGGAGCCGACTGACCTTTTCCGCCACACGGAGGTCAAGA
TGGAGCAGGTCAGCACCGCACCCGAAATGCTGGACCAGGACATGGCCTAC
AAGTACAAGGCCAAGATGAAACGTGTTCTTCCTTACTTGGCTTTGAACGA
GGTATTTATTGGCGAGCATCTATCGGCCCGAGTGTCCCACTTGCAACTGG
TGCTGGACCACCAGGACGTGGTGAACAAGACCAAATGCTCCGGACTGTGC
GTCAGCACGGGCACGGGCTCAACATCCTGGCACACCAGCATCAATCGCAT
CACAAGCCGAGATGTGGACGACCTGTTGCGTTCCCTGCCCGACGGCGATT
CAAAGAACGTGATGATGCTACGACAAAATGCAGAGGAGATCGCCCAGCGG
TACAACCAAGGCCTGCTCTTCGCGCCAGACGACCCGCGCCTCTGCTATTC
CATCCGGGAGCAAATCTGCGTGGGCGTGTGGCCTTCGCCAAAGACTTTTA
AGGAGCGCGATTTTGTGCAGACCGTGTTTGTCAAGTCGCATTGCATCGAT
GCCAACCTGGTTATAGATGGCAGCATTTCGTTCCCCTTCAACGATGGCGC
CAAGGCTTTGCTAGAGGTTCACCCAGAAGATGCCCTTCTGACAATCGCTT
TAGACGCAAGCTTTCTAGACCAT
BO06208.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 21:35:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8080-RA | 1242 | CG8080-PA | 1..1239 | 17..1255 | 6195 | 100 | Plus |
| CG8080-RE | 1242 | CG8080-PE | 41..1239 | 57..1255 | 5995 | 100 | Plus |
| CG8080-RB | 1230 | CG8080-PB | 1..1227 | 17..1255 | 5980 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 21:35:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8080-RA | 1808 | CG8080-RA | 422..1661 | 16..1255 | 6200 | 100 | Plus |
| CG8080-RE | 1402 | CG8080-RE | 57..1255 | 57..1255 | 5995 | 100 | Plus |
| CG8080-RB | 1708 | CG8080-RB | 334..1561 | 16..1255 | 5985 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 21:35:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9090083..9090487 | 1154..750 | 2025 | 100 | Minus |
| 2R | 25286936 | 2R | 9091407..9091655 | 303..55 | 1245 | 100 | Minus |
| 2R | 25286936 | 2R | 9090810..9091056 | 545..299 | 1235 | 100 | Minus |
| 2R | 25286936 | 2R | 9090540..9090749 | 754..545 | 1050 | 100 | Minus |
| 2R | 25286936 | 2R | 9089921..9090021 | 1255..1155 | 505 | 100 | Minus |
| 2R | 25286936 | 2R | 9092432..9092472 | 56..16 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 21:35:07 has no hits.
BO06208.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:26 Download gff for
BO06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 1..1242 | 17..1258 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:10 Download gff for
BO06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 498..1741 | 16..1259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 03:30:54 Download gff for
BO06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 428..1661 | 22..1257 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:26 Download gff for
BO06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 498..1741 | 16..1259 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 22:37:08 Download gff for
BO06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8080-RA | 428..1661 | 22..1257 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 22:37:08 Download gff for
BO06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9091407..9091653 | 57..303 | 100 | <- | Minus |
| 2R | 9092432..9092466 | 22..56 | 100 | | Minus |
| 2R | 9089918..9090021 | 1155..1257 | 98 | <- | Minus |
| 2R | 9090083..9090485 | 752..1154 | 100 | <- | Minus |
| 2R | 9090543..9090749 | 545..751 | 100 | <- | Minus |
| 2R | 9090811..9091051 | 304..544 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 03:30:54 Download gff for
BO06208.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 4977423..4977526 | 1155..1257 | 98 | <- | Minus |
| arm_2R | 4977588..4977990 | 752..1154 | 100 | <- | Minus |
| arm_2R | 4978048..4978254 | 545..751 | 100 | <- | Minus |
| arm_2R | 4978316..4978556 | 304..544 | 100 | <- | Minus |
| arm_2R | 4978912..4979158 | 57..303 | 100 | <- | Minus |
| arm_2R | 4979937..4979971 | 22..56 | 100 | | Minus |
BO06208.pep Sequence
Translation from 16 to 1273
> BO06208.pep
MLKSKQLLQQFSKEYAKYTPTNFKLKRALVVTKLSRYEFEQLRHPELSPD
QLQQKLRDRGTDVEMVLHLHKVHKDFERRVVQSFQDVGCEVKLSSRLEFR
SSLSKDVMSWADVIVPVGGDGTFLLSAGRASPLFALSQQKTPIVGFNSDP
LHSEGRLMLPKHYSDNPADAVSRIKSGDFKWMHRSRVRTTMLGSNGNIPE
PTDLFRHTEVKMEQVSTAPEMLDQDMAYKYKAKMKRVLPYLALNEVFIGE
HLSARVSHLQLVLDHQDVVNKTKCSGLCVSTGTGSTSWHTSINRITSRDV
DDLLRSLPDGDSKNVMMLRQNAEEIAQRYNQGLLFAPDDPRLCYSIREQI
CVGVWPSPKTFKERDFVQTVFVKSHCIDANLVIDGSISFPFNDGAKALLE
VHPEDALLTIALDASFLDH
BO06208.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8080-PA | 413 | CG8080-PA | 1..413 | 1..413 | 2142 | 100 | Plus |
| CG8080-PB | 409 | CG8080-PB | 1..409 | 1..413 | 2107 | 99 | Plus |
| CG8080-PC | 408 | CG8080-PC | 1..408 | 1..413 | 2101 | 98.8 | Plus |
| CG8080-PE | 413 | CG8080-PE | 1..413 | 1..413 | 2078 | 97.1 | Plus |
| CG8080-PD | 409 | CG8080-PD | 1..409 | 1..413 | 2043 | 96.1 | Plus |
