Clone BO06211 Report

Search the DGRC for BO06211

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:11
Vector:pDNR-Dual
Associated Gene/TranscriptCG10650-RA
Protein status:BO06211.pep: validated full length
Sequenced Size:1309

Clone Sequence Records

BO06211.3prime Sequence

899 bp (799 high quality bases) assembled on 2005-12-03

> BO06211.3prime
ATGGTCTAGAAAGCTTGCCAGGGCACTGCGTAGAGCGATCACCACTCCCG
TCAGAAGGCCGACCACGCCCACATTCCTGAGTGCGCCTGCTCCATTGAAG
GGTACCTTGTTGCACTTGCTCTCCGTACACAATTCGCACTGATGGGCCTC
CACTTTGGCATTGCACTGGTACTGCATCAGGTGGCTGGCAGCGGTAAAAC
ATCCTCGCACTCCAAGTTCATTCCAGACTCCGCTGTAGCACGTTCCATTG
GGGCAGTTGATCAAAGGGAGCGTGTCCGGATATTTGGCCGACCAGCAGCC
GGAAACCTCATTCGAAATGCATGTAATGCACTGGAACTCGCCGGCAGCCA
CATTGCAGCCATTTTCGGAGCAGGAAGTGCAGGCATTGGTTGTAGAGCAG
CCAGCCTCCAAGGTGTTTAGGCACCCTCGGGTAACATTGGTTCCTGAGGT
CATGGTATAACACCCGACTTCCTGGTTGTACTTGGCCTGTCCGCAGGACT
TCGCATTGGTAGCAACCTGTTGCTCCGCACAGTTCTCGCAAATGATACAG
GAACCGGCCTCTCGTTCGTAGGTCGGACTATTGCAAAAGTCGGAGTTGCA
GACGAGGCAACTGGGATCAGTGCTGTCCGACGCACACTTGATTTCCGTGG
TGGCCGATGTGCAACCACGGGTCATGTTGCTCGCAGACGTTCCGGTGGTG
AAGCACCCGGCATCGATTTGACTACATCCCGCGACCAAGGTATTTGAGAC
CGCATTGCAGTTCTCTCCTGAGCAATTATAGCACTGGCGACGATTGGCGG
GGAATAGTCCCACATTGCACAGGGATGCCGAGCATGAGGAGCACGTGGAT
TCCGTTCCAGCAGCACAGGGGTCACCACATTGACGGGTCACCGTCTTGG

BO06211.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG10650-PA 1278 CG10650-RA 396..1275 898..19 4400 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:02:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG10650-RB 1784 CG10650-RB 476..1355 898..19 4400 100 Minus
CG10650-RA 1527 CG10650-RA 476..1355 898..19 4400 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:02:28
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18994137..18994813 222..898 3385 100 Plus
2L 23513712 2L 18993789..18993991 19..221 1015 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:02:31 has no hits.

BO06211.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:11 Download gff for BO06211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10650-PA 395..1278 15..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:33 Download gff for BO06211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10650-PA 395..1278 15..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:15:22 Download gff for BO06211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 475..1358 15..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:55 Download gff for BO06211.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 475..1358 15..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:55 Download gff for BO06211.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 18993786..18993991 15..221 99 <- Plus
2L 18994137..18994813 222..899 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:15:22 Download gff for BO06211.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18993786..18993991 15..221 99 <- Plus
arm_2L 18994137..18994813 222..899 99   Plus

BO06211.5prime Sequence

897 bp (746 high quality bases) assembled on 2005-12-03

> BO06211.5prime
GAAGTTATCAGTCGACATGAGAGAATACAGCCTGTGTATGATTGTGATAG
CAGCTTTCATTGCCAGCCAGCTGGACAGCACCTCAGCCCTCCAGTGCTAT
TCGTGCACATCGACGACGAATGACACTGGAAATTGTTTAACGAGTCCATC
TACTCAAACTTCTATAGAGTGTGATAATGAATGCTATACTCTTATTAACG
CAGGAACTCTAACTCGTGGCTGCTTGATTAATGGCACTGCGTGCACCTTA
CCATCCTGCTCGACCTGCAAGGAAGACAATTGCAATTTGAATTTGGTGTG
CCAGCAGTGCCTCGGCGAAGCGAATTGCGCCACGACCAACGTGACGGATA
CGCAATACAATGCAGTGTGCCCCAATAATGGACAGGTCTGCGTGAATCAG
TTGAATGACAACAAGACGGTGACCCGTCAATGTGGTGACCCCTGTGCTGC
TGGAACGGAATCCACGTGCTCCTCATGCTCGGCATCCCTGTGCAATGTGG
GACTATTCCCCGCCAATCGTCGCCAGTGCTATAATTGCTCAGGAGAGAAC
TGCAATGCGGTCTCAAATACCTTGGTCGCGGGATGTAGTCAAATCGATGC
CGGGTGCTTCACCACCGGAACGTCTGCGAGCAACATGACCCGTGGTTGCA
CATCGGCCACCACGGAAATCAAGTGTGCGTCGGACAGCACTGATCCCAGT
TGCCTCGTCTGCAACTCCGACTTTTGCAATAGTCCGACCTACGAACGAGA
GGCCGGTTCCTGTATCATTTGCGAGAACTGTGCGGAGCAACAGGTTGCTA
CCAATGCGAAGTCCTGCGGACAGGCCAAGTACAACCAGGAAGTCGGGTGT
TATACCATGACCTCAGGAACCAATGTACCCGAGGGTGCCTAAACACC

BO06211.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG10650-PA 1278 CG10650-RA 1..860 17..876 4300 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10650-RB 1784 CG10650-RB 80..962 16..897 4390 99.9 Plus
CG10650-RA 1527 CG10650-RA 80..962 16..897 4390 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:41
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18994327..18995023 897..202 3435 99.9 Minus
2L 23513712 2L 18995601..18995712 204..93 560 100 Minus
2L 23513712 2L 18995779..18995855 92..16 385 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:05:42 has no hits.

BO06211.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:12 Download gff for BO06211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10650-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:34 Download gff for BO06211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10650-PA 1..882 17..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:34 Download gff for BO06211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 75..962 10..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:08 Download gff for BO06211.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 75..962 10..897 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:08 Download gff for BO06211.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 18994327..18995021 204..897 99 <- Minus
2L 18995602..18995712 93..203 100 <- Minus
2L 18995779..18995858 10..92 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:34 Download gff for BO06211.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18994327..18995021 204..897 99 <- Minus
arm_2L 18995602..18995712 93..203 100 <- Minus
arm_2L 18995779..18995858 10..92 96   Minus

BO06211.complete Sequence

1309 bp (1309 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ638635

> BO06211.complete
GAAGTTATCAGTCGACATGAGAGAATACAGCCTGTGTATGATTGTGATAG
CAGCTTTCATTGCCAGCCAGCTGGACAGCACCTCAGCCCTCCAGTGCTAT
TCGTGCACATCGACGACGAATGACACTGGAAATTGTTTAACGAGTCCATC
TACTCAAACTTCTATAGAGTGTGATAATGAATGCTATACTCTTATTAACG
CAGGAACTCTAACTCGTGGCTGCTTGATTAATGGCACTGCGTGCACCTTA
CCATCCTGCTCGACCTGCAAGGAAGACAATTGCAATTTGAATTTGGTGTG
CCAGCAGTGCCTCGGCGAAGCGAATTGCGCCACGACCAACGTGACGGATA
CGCAATACAATGCAGTGTGCCCCAATAATGGACAGGTCTGCGTGAATCAG
TTGAATGACAACAAGACGGTGACCCGTCAATGTGGTGACCCCTGTGCTGC
TGGAACGGAATCCACGTGCTCCTCATGCTCGGCATCCCTGTGCAATGTGG
GACTATTCCCCGCCAATCGTCGCCAGTGCTATAATTGCTCAGGAGAGAAC
TGCAATGCGGTCTCAAATACCTTGGTCGCGGGATGTAGTCAAATCGATGC
CGGGTGCTTCACCACCGGAACGTCTGCGAGCAACATGACCCGTGGTTGCA
CATCGGCCACCACGGAAATCAAGTGTGCGTCGGACAGCACTGATCCCAGT
TGCCTCGTCTGCAACTCCGACTTTTGCAATAGTCCGACCTACGAACGAGA
GGCCGGTTCCTGTATCATTTGCGAGAACTGTGCGGAGCAACAGGTTGCTA
CCAATGCGAAGTCCTGCGGACAGGCCAAGTACAACCAGGAAGTCGGGTGT
TATACCATGACCTCAGGAACCAATGTTACCCGAGGGTGCCTAAACACCTT
GGAGGCTGGCTGCTCTACAACCAATGCCTGCACTTCCTGCTCCGAAAATG
GCTGCAATGTGGCTGCCGGCGAGTTCCAGTGCATTACATGCATTTCGAAT
GAGGTTTCCGGCTGCTGGTCGGCCAAATATCCGGACACGCTCCCTTTGAT
CAACTGCCCCAATGGAACGTGCTACAGCGGAGTCTGGAATGAACTTGGAG
TGCGAGGATGTTTTACCGCTGCCAGCCACCTGATGCAGTACCAGTGCAAT
GCCAAAGTGGAGGCCCATCAGTGCGAATTGTGTACGGAGAGCAAGTGCAA
CAAGGTACCCTTCAATGGAGCAGGCGCACTCAGGAATGTGGGCGTGGTCG
GCCTTCTGACGGGAGTGGTGATCGCTCTACGCAGTGCCCTGGCAAGCTTT
CTAGACCAT

BO06211.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10650-RB 1278 CG10650-PB 1..1275 17..1291 6375 100 Plus
CG10650-RA 1278 CG10650-PA 1..1275 17..1291 6375 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG10650-RB 1784 CG10650-RB 80..1355 16..1291 6380 100 Plus
CG10650-RA 1527 CG10650-RA 80..1355 16..1291 6380 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:17
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 18994137..18995023 1088..202 4435 100 Minus
2L 23513712 2L 18993789..18993991 1291..1089 1015 100 Minus
2L 23513712 2L 18995601..18995712 204..93 560 100 Minus
2L 23513712 2L 18995779..18995855 92..16 385 100 Minus
Blast to na_te.dros performed on 2014-11-27 21:01:19 has no hits.

BO06211.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:27 Download gff for BO06211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 1..1278 17..1295 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:12 Download gff for BO06211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 71..1354 10..1295 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:54 Download gff for BO06211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 81..1355 17..1293 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:27 Download gff for BO06211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 71..1354 10..1295 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:04 Download gff for BO06211.complete
Subject Subject Range Query Range Percent Splice Strand
CG10650-RA 81..1355 17..1293 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:04 Download gff for BO06211.complete
Subject Subject Range Query Range Percent Splice Strand
2L 18993787..18993991 1089..1293 99 <- Minus
2L 18994137..18995021 204..1088 100 <- Minus
2L 18995602..18995712 93..203 100 <- Minus
2L 18995779..18995854 17..92 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:54 Download gff for BO06211.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 18995779..18995854 17..92 100   Minus
arm_2L 18995602..18995712 93..203 100 <- Minus
arm_2L 18993787..18993991 1089..1293 99 <- Minus
arm_2L 18994137..18995021 204..1088 100 <- Minus

BO06211.pep Sequence

Translation from 16 to 1309

> BO06211.pep
MREYSLCMIVIAAFIASQLDSTSALQCYSCTSTTNDTGNCLTSPSTQTSI
ECDNECYTLINAGTLTRGCLINGTACTLPSCSTCKEDNCNLNLVCQQCLG
EANCATTNVTDTQYNAVCPNNGQVCVNQLNDNKTVTRQCGDPCAAGTEST
CSSCSASLCNVGLFPANRRQCYNCSGENCNAVSNTLVAGCSQIDAGCFTT
GTSASNMTRGCTSATTEIKCASDSTDPSCLVCNSDFCNSPTYEREAGSCI
ICENCAEQQVATNAKSCGQAKYNQEVGCYTMTSGTNVTRGCLNTLEAGCS
TTNACTSCSENGCNVAAGEFQCITCISNEVSGCWSAKYPDTLPLINCPNG
TCYSGVWNELGVRGCFTAASHLMQYQCNAKVEAHQCELCTESKCNKVPFN
GAGALRNVGVVGLLTGVVIALRSALASFLDH

BO06211.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG10650-PB 425 CG10650-PB 1..425 1..425 2339 100 Plus
CG10650-PA 425 CG10650-PA 1..425 1..425 2339 100 Plus
CG13492-PD 2979 CG13492-PD 2134..2536 25..397 268 25.9 Plus
CG13492-PD 2979 CG13492-PD 1291..1703 25..403 266 25.1 Plus
CG13492-PD 2979 CG13492-PD 2414..2790 56..397 252 25.8 Plus
CG13492-PD 2979 CG13492-PD 2555..2970 25..426 246 24 Plus
CG13492-PD 2979 CG13492-PD 1963..2372 27..395 233 24.1 Plus
CG13492-PD 2979 CG13492-PD 1202..1613 25..395 227 24.6 Plus
CG13492-PD 2979 CG13492-PD 1716..2116 25..397 222 23.2 Plus
CG13492-PD 2979 CG13492-PD 453..849 25..395 217 24.9 Plus
CG15773-PA 478 CG15773-PA 30..363 92..396 216 25.9 Plus
CG13492-PD 2979 CG13492-PD 866..1273 22..397 212 24.3 Plus
CG15773-PB 319 CG15773-PB 30..315 92..354 211 27.4 Plus
CG15773-PA 478 CG15773-PA 12..445 6..398 200 24.8 Plus
CG13492-PD 2979 CG13492-PD 2628..2947 20..314 193 23 Plus