Clone Sequence Records
BO06211.3prime Sequence
899 bp (799 high quality bases) assembled on 2005-12-03
> BO06211.3prime
ATGGTCTAGAAAGCTTGCCAGGGCACTGCGTAGAGCGATCACCACTCCCG
TCAGAAGGCCGACCACGCCCACATTCCTGAGTGCGCCTGCTCCATTGAAG
GGTACCTTGTTGCACTTGCTCTCCGTACACAATTCGCACTGATGGGCCTC
CACTTTGGCATTGCACTGGTACTGCATCAGGTGGCTGGCAGCGGTAAAAC
ATCCTCGCACTCCAAGTTCATTCCAGACTCCGCTGTAGCACGTTCCATTG
GGGCAGTTGATCAAAGGGAGCGTGTCCGGATATTTGGCCGACCAGCAGCC
GGAAACCTCATTCGAAATGCATGTAATGCACTGGAACTCGCCGGCAGCCA
CATTGCAGCCATTTTCGGAGCAGGAAGTGCAGGCATTGGTTGTAGAGCAG
CCAGCCTCCAAGGTGTTTAGGCACCCTCGGGTAACATTGGTTCCTGAGGT
CATGGTATAACACCCGACTTCCTGGTTGTACTTGGCCTGTCCGCAGGACT
TCGCATTGGTAGCAACCTGTTGCTCCGCACAGTTCTCGCAAATGATACAG
GAACCGGCCTCTCGTTCGTAGGTCGGACTATTGCAAAAGTCGGAGTTGCA
GACGAGGCAACTGGGATCAGTGCTGTCCGACGCACACTTGATTTCCGTGG
TGGCCGATGTGCAACCACGGGTCATGTTGCTCGCAGACGTTCCGGTGGTG
AAGCACCCGGCATCGATTTGACTACATCCCGCGACCAAGGTATTTGAGAC
CGCATTGCAGTTCTCTCCTGAGCAATTATAGCACTGGCGACGATTGGCGG
GGAATAGTCCCACATTGCACAGGGATGCCGAGCATGAGGAGCACGTGGAT
TCCGTTCCAGCAGCACAGGGGTCACCACATTGACGGGTCACCGTCTTGG
BO06211.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-PA | 1278 | CG10650-RA | 396..1275 | 898..19 | 4400 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:02:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-RB | 1784 | CG10650-RB | 476..1355 | 898..19 | 4400 | 100 | Minus |
CG10650-RA | 1527 | CG10650-RA | 476..1355 | 898..19 | 4400 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18994137..18994813 | 222..898 | 3385 | 100 | Plus |
2L | 23513712 | 2L | 18993789..18993991 | 19..221 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:02:31 has no hits.
BO06211.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:11 Download gff for
BO06211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-PA | 395..1278 | 15..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:33 Download gff for
BO06211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-PA | 395..1278 | 15..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:15:22 Download gff for
BO06211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 475..1358 | 15..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:09:55 Download gff for
BO06211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 475..1358 | 15..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:09:55 Download gff for
BO06211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18993786..18993991 | 15..221 | 99 | <- | Plus |
2L | 18994137..18994813 | 222..899 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:15:22 Download gff for
BO06211.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18993786..18993991 | 15..221 | 99 | <- | Plus |
arm_2L | 18994137..18994813 | 222..899 | 99 | | Plus |
BO06211.5prime Sequence
897 bp (746 high quality bases) assembled on 2005-12-03
> BO06211.5prime
GAAGTTATCAGTCGACATGAGAGAATACAGCCTGTGTATGATTGTGATAG
CAGCTTTCATTGCCAGCCAGCTGGACAGCACCTCAGCCCTCCAGTGCTAT
TCGTGCACATCGACGACGAATGACACTGGAAATTGTTTAACGAGTCCATC
TACTCAAACTTCTATAGAGTGTGATAATGAATGCTATACTCTTATTAACG
CAGGAACTCTAACTCGTGGCTGCTTGATTAATGGCACTGCGTGCACCTTA
CCATCCTGCTCGACCTGCAAGGAAGACAATTGCAATTTGAATTTGGTGTG
CCAGCAGTGCCTCGGCGAAGCGAATTGCGCCACGACCAACGTGACGGATA
CGCAATACAATGCAGTGTGCCCCAATAATGGACAGGTCTGCGTGAATCAG
TTGAATGACAACAAGACGGTGACCCGTCAATGTGGTGACCCCTGTGCTGC
TGGAACGGAATCCACGTGCTCCTCATGCTCGGCATCCCTGTGCAATGTGG
GACTATTCCCCGCCAATCGTCGCCAGTGCTATAATTGCTCAGGAGAGAAC
TGCAATGCGGTCTCAAATACCTTGGTCGCGGGATGTAGTCAAATCGATGC
CGGGTGCTTCACCACCGGAACGTCTGCGAGCAACATGACCCGTGGTTGCA
CATCGGCCACCACGGAAATCAAGTGTGCGTCGGACAGCACTGATCCCAGT
TGCCTCGTCTGCAACTCCGACTTTTGCAATAGTCCGACCTACGAACGAGA
GGCCGGTTCCTGTATCATTTGCGAGAACTGTGCGGAGCAACAGGTTGCTA
CCAATGCGAAGTCCTGCGGACAGGCCAAGTACAACCAGGAAGTCGGGTGT
TATACCATGACCTCAGGAACCAATGTACCCGAGGGTGCCTAAACACC
BO06211.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-PA | 1278 | CG10650-RA | 1..860 | 17..876 | 4300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-RB | 1784 | CG10650-RB | 80..962 | 16..897 | 4390 | 99.9 | Plus |
CG10650-RA | 1527 | CG10650-RA | 80..962 | 16..897 | 4390 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18994327..18995023 | 897..202 | 3435 | 99.9 | Minus |
2L | 23513712 | 2L | 18995601..18995712 | 204..93 | 560 | 100 | Minus |
2L | 23513712 | 2L | 18995779..18995855 | 92..16 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:05:42 has no hits.
BO06211.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:12 Download gff for
BO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:34 Download gff for
BO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-PA | 1..882 | 17..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:34 Download gff for
BO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 75..962 | 10..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:08 Download gff for
BO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 75..962 | 10..897 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:08 Download gff for
BO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18994327..18995021 | 204..897 | 99 | <- | Minus |
2L | 18995602..18995712 | 93..203 | 100 | <- | Minus |
2L | 18995779..18995858 | 10..92 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:34 Download gff for
BO06211.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18994327..18995021 | 204..897 | 99 | <- | Minus |
arm_2L | 18995602..18995712 | 93..203 | 100 | <- | Minus |
arm_2L | 18995779..18995858 | 10..92 | 96 | | Minus |
BO06211.complete Sequence
1309 bp (1309 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ638635
> BO06211.complete
GAAGTTATCAGTCGACATGAGAGAATACAGCCTGTGTATGATTGTGATAG
CAGCTTTCATTGCCAGCCAGCTGGACAGCACCTCAGCCCTCCAGTGCTAT
TCGTGCACATCGACGACGAATGACACTGGAAATTGTTTAACGAGTCCATC
TACTCAAACTTCTATAGAGTGTGATAATGAATGCTATACTCTTATTAACG
CAGGAACTCTAACTCGTGGCTGCTTGATTAATGGCACTGCGTGCACCTTA
CCATCCTGCTCGACCTGCAAGGAAGACAATTGCAATTTGAATTTGGTGTG
CCAGCAGTGCCTCGGCGAAGCGAATTGCGCCACGACCAACGTGACGGATA
CGCAATACAATGCAGTGTGCCCCAATAATGGACAGGTCTGCGTGAATCAG
TTGAATGACAACAAGACGGTGACCCGTCAATGTGGTGACCCCTGTGCTGC
TGGAACGGAATCCACGTGCTCCTCATGCTCGGCATCCCTGTGCAATGTGG
GACTATTCCCCGCCAATCGTCGCCAGTGCTATAATTGCTCAGGAGAGAAC
TGCAATGCGGTCTCAAATACCTTGGTCGCGGGATGTAGTCAAATCGATGC
CGGGTGCTTCACCACCGGAACGTCTGCGAGCAACATGACCCGTGGTTGCA
CATCGGCCACCACGGAAATCAAGTGTGCGTCGGACAGCACTGATCCCAGT
TGCCTCGTCTGCAACTCCGACTTTTGCAATAGTCCGACCTACGAACGAGA
GGCCGGTTCCTGTATCATTTGCGAGAACTGTGCGGAGCAACAGGTTGCTA
CCAATGCGAAGTCCTGCGGACAGGCCAAGTACAACCAGGAAGTCGGGTGT
TATACCATGACCTCAGGAACCAATGTTACCCGAGGGTGCCTAAACACCTT
GGAGGCTGGCTGCTCTACAACCAATGCCTGCACTTCCTGCTCCGAAAATG
GCTGCAATGTGGCTGCCGGCGAGTTCCAGTGCATTACATGCATTTCGAAT
GAGGTTTCCGGCTGCTGGTCGGCCAAATATCCGGACACGCTCCCTTTGAT
CAACTGCCCCAATGGAACGTGCTACAGCGGAGTCTGGAATGAACTTGGAG
TGCGAGGATGTTTTACCGCTGCCAGCCACCTGATGCAGTACCAGTGCAAT
GCCAAAGTGGAGGCCCATCAGTGCGAATTGTGTACGGAGAGCAAGTGCAA
CAAGGTACCCTTCAATGGAGCAGGCGCACTCAGGAATGTGGGCGTGGTCG
GCCTTCTGACGGGAGTGGTGATCGCTCTACGCAGTGCCCTGGCAAGCTTT
CTAGACCAT
BO06211.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 21:01:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-RB | 1278 | CG10650-PB | 1..1275 | 17..1291 | 6375 | 100 | Plus |
CG10650-RA | 1278 | CG10650-PA | 1..1275 | 17..1291 | 6375 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:01:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-RB | 1784 | CG10650-RB | 80..1355 | 16..1291 | 6380 | 100 | Plus |
CG10650-RA | 1527 | CG10650-RA | 80..1355 | 16..1291 | 6380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 21:01:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 18994137..18995023 | 1088..202 | 4435 | 100 | Minus |
2L | 23513712 | 2L | 18993789..18993991 | 1291..1089 | 1015 | 100 | Minus |
2L | 23513712 | 2L | 18995601..18995712 | 204..93 | 560 | 100 | Minus |
2L | 23513712 | 2L | 18995779..18995855 | 92..16 | 385 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 21:01:19 has no hits.
BO06211.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:27 Download gff for
BO06211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 1..1278 | 17..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:12 Download gff for
BO06211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 71..1354 | 10..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:54 Download gff for
BO06211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 81..1355 | 17..1293 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:27 Download gff for
BO06211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 71..1354 | 10..1295 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:33:04 Download gff for
BO06211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10650-RA | 81..1355 | 17..1293 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:33:04 Download gff for
BO06211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 18993787..18993991 | 1089..1293 | 99 | <- | Minus |
2L | 18994137..18995021 | 204..1088 | 100 | <- | Minus |
2L | 18995602..18995712 | 93..203 | 100 | <- | Minus |
2L | 18995779..18995854 | 17..92 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:54 Download gff for
BO06211.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 18995779..18995854 | 17..92 | 100 | | Minus |
arm_2L | 18995602..18995712 | 93..203 | 100 | <- | Minus |
arm_2L | 18993787..18993991 | 1089..1293 | 99 | <- | Minus |
arm_2L | 18994137..18995021 | 204..1088 | 100 | <- | Minus |
BO06211.pep Sequence
Translation from 16 to 1309
> BO06211.pep
MREYSLCMIVIAAFIASQLDSTSALQCYSCTSTTNDTGNCLTSPSTQTSI
ECDNECYTLINAGTLTRGCLINGTACTLPSCSTCKEDNCNLNLVCQQCLG
EANCATTNVTDTQYNAVCPNNGQVCVNQLNDNKTVTRQCGDPCAAGTEST
CSSCSASLCNVGLFPANRRQCYNCSGENCNAVSNTLVAGCSQIDAGCFTT
GTSASNMTRGCTSATTEIKCASDSTDPSCLVCNSDFCNSPTYEREAGSCI
ICENCAEQQVATNAKSCGQAKYNQEVGCYTMTSGTNVTRGCLNTLEAGCS
TTNACTSCSENGCNVAAGEFQCITCISNEVSGCWSAKYPDTLPLINCPNG
TCYSGVWNELGVRGCFTAASHLMQYQCNAKVEAHQCELCTESKCNKVPFN
GAGALRNVGVVGLLTGVVIALRSALASFLDH
BO06211.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10650-PB | 425 | CG10650-PB | 1..425 | 1..425 | 2339 | 100 | Plus |
CG10650-PA | 425 | CG10650-PA | 1..425 | 1..425 | 2339 | 100 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2134..2536 | 25..397 | 268 | 25.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1291..1703 | 25..403 | 266 | 25.1 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2414..2790 | 56..397 | 252 | 25.8 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2555..2970 | 25..426 | 246 | 24 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1963..2372 | 27..395 | 233 | 24.1 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1202..1613 | 25..395 | 227 | 24.6 | Plus |
CG13492-PD | 2979 | CG13492-PD | 1716..2116 | 25..397 | 222 | 23.2 | Plus |
CG13492-PD | 2979 | CG13492-PD | 453..849 | 25..395 | 217 | 24.9 | Plus |
CG15773-PA | 478 | CG15773-PA | 30..363 | 92..396 | 216 | 25.9 | Plus |
CG13492-PD | 2979 | CG13492-PD | 866..1273 | 22..397 | 212 | 24.3 | Plus |
CG15773-PB | 319 | CG15773-PB | 30..315 | 92..354 | 211 | 27.4 | Plus |
CG15773-PA | 478 | CG15773-PA | 12..445 | 6..398 | 200 | 24.8 | Plus |
CG13492-PD | 2979 | CG13492-PD | 2628..2947 | 20..314 | 193 | 23 | Plus |