Clone Sequence Records
BO06214.3prime Sequence
752 bp (670 high quality bases) assembled on 2005-12-03
> BO06214.3prime
ATGGTCTAGAAAGCTTGCGTAGAAGTCCGAGCTTTTGTCTTCGAGATCGG
CAAGCATCTTGTCCCTGATCTGCGGCCGTGGATCCTCCGTGATCTCGGTG
GGCACTGCTCCCGCCTGACCCAGCATAAACTCCAGCTCCTCAGCGGTCAA
CTTGTCGCCGCGCAGCTCCAGTGGGCCTATGTACTGCTTGCGCAGCGCAC
CCTCGTGGTAGATAAAGATGGTGGGCAGGTTCTTCTCGGGGAAGTTTGGT
ATGCAGGTGGTGGCAACGGAGCGCACGAACTTGGTCTGTGGAAAGCGGAC
GGCCAGCTGCTGCATGTGATGGTGGATCAGTGCGCACAGCGGTACGCCGT
TGGCATACAGGTGGAGTACCACCCAGATGCCCTCGCCGGCCTTGGTTACC
TCGTTGACATAATCCTGTCCTGAGATCTCGCGCACTGATCCAAATCGCGC
CTTTTCAGCGGTGGCCCTCATCTCGGCGATGCGTCGCTGGCGATACTGCT
CTAGAACAGCCTCGTCCTCGGAATCCTCCAGTTCGTCGAGTTCGTCCAGC
GACATGTCGTCGATCTTCTTGTCGCGCTGGCCTTCATTCAGTGGCAGATC
TGTGCGCCGCTGGATGGCATCGTCCATCAGCTTCTGGATCTGATCCTCTG
TGATCTCCGCCTCCTTCGCCTTGGGCCCAATTATTCCCTTGGCTCGGAGC
ACATCATTCCACTCGGTATCTTCGTTTGGGTCCTGCATGTCGACTGATAA
CT
BO06214.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18593-PA | 723 | viaf-RA | 1..720 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| viaf-RA | 1158 | CG18593-RA | 134..855 | 740..19 | 3610 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11992156..11992871 | 19..734 | 3580 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:00:39 has no hits.
BO06214.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:15 Download gff for
BO06214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-PA | 1..723 | 16..738 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:38 Download gff for
BO06214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18593-PA | 1..723 | 16..738 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:27 Download gff for
BO06214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 126..855 | 19..748 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:05:02 Download gff for
BO06214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 126..855 | 19..748 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:05:02 Download gff for
BO06214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11992156..11992876 | 19..741 | 99 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:27 Download gff for
BO06214.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11985256..11985976 | 19..741 | 99 | <- | Plus |
BO06214.5prime Sequence
752 bp (751 high quality bases) assembled on 2005-12-03
> BO06214.5prime
GAAGTTATCAGTCGACATGCAGGACCCAAACGAAGATACCGAGTGGAATG
ATGTGCTCCGAGCCAAGGGAATAATTGGGCCCAAGGCGAAGGAGGCGGAG
ATCACAGAGGATCAGATCCAGAAGCTGATGGACGATGCCATCCAGCGGCG
CACAGATCTGCCACTGAATGAAGGCCAGCGCGACAAGAAGATCGACGACA
TGTCGCTGGACGAACTCGACGAACTGGAGGATTCCGAGGACGAGGCTGTT
CTAGAGCAGTATCGCCAGCGACGCATCGCCGAGATGAGGGCCACCGCTGA
AAAGGCGCGATTTGGATCAGTGCGCGAGATCTCAGGACAGGATTATGTCA
ACGAGGTAACCAAGGCCGGCGAGGGCATCTGGGTGGTACTCCACCTGTAT
GCCAACGGCGTACCGCTGTGCGCACTGATCCACCATCACATGCAGCAGCT
GGCCGTCCGCTTTCCACAGACCAAGTTCGTGCGCTCCGTTGCCACCACCT
GCATACCAAACTTCCCCGAGAAGAACCTGCCCACCATCTTTATCTACCAC
GAGGGTGCGCTGCGCAAGCAGTACATAGGCCCACTGGAGCTGCGCGGCGA
CAAGTTGACCGCTGAGGAGCTGGAGTTTATGCTGGGTCAGGCGGGAGCAG
TGCCCACCGAGATCACGGAGGATCCACGGCCGCAGATCAGGGACAAGATG
CTTGCCGATCTCGAAGACAAAAGCTCGGACTTCTACGCAAGCTTTCTAGA
CC
BO06214.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG18593-PA | 723 | viaf-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:08:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| viaf-RA | 1158 | CG18593-RA | 134..855 | 15..736 | 3610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:08:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11992156..11992871 | 736..21 | 3580 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:08:33 has no hits.
BO06214.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:16 Download gff for
BO06214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:40 Download gff for
BO06214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18593-PA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:05:00 Download gff for
BO06214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 126..855 | 7..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:17:30 Download gff for
BO06214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 126..855 | 7..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:17:30 Download gff for
BO06214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11992156..11992876 | 14..736 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:05:00 Download gff for
BO06214.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11985256..11985976 | 14..736 | 99 | <- | Minus |
BO06214.complete Sequence
754 bp (754 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630303
> BO06214.complete
GAAGTTATCAGTCGACATGCAGGACCCAAACGAAGATACCGAGTGGAATG
ATGTGCTCCGAGCCAAGGGAATAATTGGGCCCAAGGCGAAGGAGGCGGAG
ATCACAGAGGATCAGATCCAGAAGCTGATGGACGATGCCATCCAGCGGCG
CACAGATCTGCCACTGAATGAAGGCCAGCGCGACAAGAAGATCGACGACA
TGTCGCTGGACGAACTCGACGAACTGGAGGATTCCGAGGACGAGGCTGTT
CTAGAGCAGTATCGCCAGCGACGCATCGCCGAGATGAGGGCCACCGCTGA
AAAGGCGCGATTTGGATCAGTGCGCGAGATCTCAGGACAGGATTATGTCA
ACGAGGTAACCAAGGCCGGCGAGGGCATCTGGGTGGTACTCCACCTGTAT
GCCAACGGCGTACCGCTGTGCGCACTGATCCACCATCACATGCAGCAGCT
GGCCGTCCGCTTTCCACAGACCAAGTTCGTGCGCTCCGTTGCCACCACCT
GCATACCAAACTTCCCCGAGAAGAACCTGCCCACCATCTTTATCTACCAC
GAGGGTGCGCTGCGCAAGCAGTACATAGGCCCACTGGAGCTGCGCGGCGA
CAAGTTGACCGCTGAGGAGCTGGAGTTTATGCTGGGTCAGGCGGGAGCAG
TGCCCACCGAGATCACGGAGGATCCACGGCCGCAGATCAGGGACAAGATG
CTTGCCGATCTCGAAGACAAAAGCTCGGACTTCTACGCAAGCTTTCTAGA
CCAT
BO06214.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:34:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| viaf-RA | 723 | CG18593-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:34:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| viaf-RA | 1158 | CG18593-RA | 134..855 | 15..736 | 3610 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11992156..11992871 | 736..21 | 3580 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 08:34:40 has no hits.
BO06214.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:28 Download gff for
BO06214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 1..723 | 17..739 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-28 16:57:14 Download gff for
BO06214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 136..855 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:23:02 Download gff for
BO06214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 136..855 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:28 Download gff for
BO06214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 126..855 | 7..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:20:51 Download gff for
BO06214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| viaf-RA | 136..855 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:20:51 Download gff for
BO06214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11992153..11992873 | 17..738 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:23:02 Download gff for
BO06214.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11985253..11985973 | 17..738 | 99 | | Minus |
BO06214.pep Sequence
Translation from 16 to 754
> BO06214.pep
MQDPNEDTEWNDVLRAKGIIGPKAKEAEITEDQIQKLMDDAIQRRTDLPL
NEGQRDKKIDDMSLDELDELEDSEDEAVLEQYRQRRIAEMRATAEKARFG
SVREISGQDYVNEVTKAGEGIWVVLHLYANGVPLCALIHHHMQQLAVRFP
QTKFVRSVATTCIPNFPEKNLPTIFIYHEGALRKQYIGPLELRGDKLTAE
ELEFMLGQAGAVPTEITEDPRPQIRDKMLADLEDKSSDFYASFLDH
BO06214.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| viaf-PA | 240 | CG18593-PA | 1..240 | 1..240 | 1243 | 100 | Plus |
| CG7650-PA | 276 | CG7650-PA | 117..269 | 65..212 | 152 | 26.8 | Plus |
