Clone Sequence Records
BO06215.3prime Sequence
332 bp (331 high quality bases) assembled on 2005-12-03
> BO06215.3prime
ATGGTCTCGAAAGCCTGCACGACGTTTTCCGAAACGCAGGAAGACGTGAT
CGACATCCGTTCGCTTGTTGTAGTTCTTCAACAGGTCATCAGAGTTGGCC
ACCAAAGCGGATGCCTCGTTGTTGATGTAGGACTTCAGCGCCGACGTCAG
TTGATCGGAGTTCTCCAGGGCCTGGCACACCTTCCGGATGTGCGGCGGCA
TCTCCTCGACGATGCCAGACTGGCATAGAGGTGGACCCTGAACTGCGGCC
CGTGTGTTGGACACGGCCAGGAGGACGATGGCCAGGCAGCAGGCGACAAA
GAACTGAGCGAAGGACATGTCGACTGATAACT
BO06215.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6440-PA | 303 | Dms-RA | 1..300 | 318..19 | 1500 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:05:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-RB | 908 | CG6440-RB | 114..414 | 319..19 | 1505 | 100 | Minus |
Ms-RC | 1065 | CG6440-RC | 131..431 | 319..19 | 1505 | 100 | Minus |
Ms-RA | 925 | CG6440-RA | 131..431 | 319..19 | 1505 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:05:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24342828..24343039 | 319..108 | 1060 | 100 | Minus |
3R | 32079331 | 3R | 24343102..24343191 | 108..19 | 450 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:05:31 has no hits.
BO06215.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:17 Download gff for
BO06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dms-PA | 1..303 | 16..318 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:42 Download gff for
BO06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6440-PA | 1..303 | 16..318 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:14 Download gff for
BO06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 124..441 | 10..327 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:16 Download gff for
BO06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 124..441 | 10..327 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:16 Download gff for
BO06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24342828..24343039 | 108..319 | 100 | -> | Minus |
3R | 24343103..24343201 | 10..107 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:14 Download gff for
BO06215.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20168550..20168761 | 108..319 | 100 | -> | Minus |
arm_3R | 20168825..20168923 | 10..107 | 95 | | Minus |
BO06215.5prime Sequence
332 bp (331 high quality bases) assembled on 2005-12-03
> BO06215.5prime
GAAGTTATCAGTCGACATGTCCTTCGCTCAGTTCTTTGTCGCCTGCTGCC
TGGCCATCGTCCTCCTGGCCGTGTCCAACACACGGGCCGCAGTTCAGGGT
CCACCTCTATGCCAGTCTGGCATCGTCGAGGAGATGCCGCCGCACATCCG
GAAGGTGTGCCAGGCCCTGGAGAACTCCGATCAACTGACGTCGGCGCTGA
AGTCCTACATCAACAACGAGGCATCCGCTTTGGTGGCCAACTCTGATGAC
CTGTTGAAGAACTACAACAAGCGAACGGATGTCGATCACGTCTTCCTGCG
TTTCGGAAAACGTCGTGCAGGCTTTCGAGACC
BO06215.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6440-PA | 303 | Dms-RA | 1..300 | 17..316 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:54:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-RB | 908 | CG6440-RB | 114..414 | 16..316 | 1505 | 100 | Plus |
Ms-RC | 1065 | CG6440-RC | 131..431 | 16..316 | 1505 | 100 | Plus |
Ms-RA | 925 | CG6440-RA | 131..431 | 16..316 | 1505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:54:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24342828..24343039 | 16..227 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 24343102..24343191 | 227..316 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:54:38 has no hits.
BO06215.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:18 Download gff for
BO06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dms-PA | 1..303 | 17..319 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:43 Download gff for
BO06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6440-PA | 1..303 | 17..319 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:53 Download gff for
BO06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 124..441 | 8..325 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:34:51 Download gff for
BO06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 124..441 | 8..325 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:34:51 Download gff for
BO06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24342828..24343039 | 16..227 | 100 | -> | Plus |
3R | 24343103..24343201 | 228..325 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:53 Download gff for
BO06215.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20168825..20168923 | 228..325 | 95 | | Plus |
arm_3R | 20168550..20168761 | 16..227 | 100 | -> | Plus |
BO06215.complete Sequence
334 bp assembled on 2011-06-28
> BO06215.complete
GAAGTTATCAGTCGACATGTCCTTCGCTCAGTTCTTTGTCGCCTGCTGCC
TGGCCATCGTCCTCCTGGCCGTGTCCAACACACGGGCCGCAGTTCAGGGT
CCACCTCTATGCCAGTCTGGCATCGTCGAGGAGATGCCGCCGCACATCCG
GAAGGTGTGCCAGGCCCTGGAGAACTCCGATCAACTGACGTCGGCGCTGA
AGTCCTACATCAACAACGAGGCATCCGCTTTGGTGGCCAACTCTGATGAC
CTGTTGAAGAACTACAACAAGCGAACGGATGTCGATCACGTCTTCCTGCG
TTTCGGAAAACGTCGTGCAGGCTTTCGAGACCAT
BO06215.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:05:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-RB | 303 | CG6440-PB | 1..300 | 17..316 | 1500 | 100 | Plus |
Ms-RC | 303 | CG6440-PC | 1..300 | 17..316 | 1500 | 100 | Plus |
Ms-RA | 303 | CG6440-PA | 1..300 | 17..316 | 1500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:05:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-RB | 908 | CG6440-RB | 114..414 | 16..316 | 1505 | 100 | Plus |
Ms-RC | 1065 | CG6440-RC | 131..431 | 16..316 | 1505 | 100 | Plus |
Ms-RA | 925 | CG6440-RA | 131..431 | 16..316 | 1505 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:05:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 24342828..24343039 | 16..227 | 1060 | 100 | Plus |
3R | 32079331 | 3R | 24343102..24343191 | 227..316 | 450 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 16:05:11 has no hits.
BO06215.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.32.fasta performed 2011-06-28 12:16:04 Download gff for
BO06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dms-RA | 130..429 | 17..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:51:58 Download gff for
BO06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 132..431 | 17..318 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:10:54 Download gff for
BO06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ms-RA | 132..431 | 17..318 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:10:54 Download gff for
BO06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 24342829..24343039 | 17..227 | 100 | -> | Plus |
3R | 24343103..24343191 | 228..318 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:51:58 Download gff for
BO06215.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 20168551..20168761 | 17..227 | 100 | -> | Plus |
arm_3R | 20168825..20168913 | 228..318 | 97 | | Plus |
BO06215.pep Sequence
Translation from 16 to 334
> BO06215.pep
MSFAQFFVACCLAIVLLAVSNTRAAVQGPPLCQSGIVEEMPPHIRKVCQA
LENSDQLTSALKSYINNEASALVANSDDLLKNYNKRTDVDHVFLRFGKRR
AGFRDH
BO06215.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:49:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ms-PB | 100 | CG6440-PB | 1..100 | 1..100 | 511 | 100 | Plus |
Ms-PC | 100 | CG6440-PC | 1..100 | 1..100 | 511 | 100 | Plus |
Ms-PA | 100 | CG6440-PA | 1..100 | 1..100 | 511 | 100 | Plus |