Clone Sequence Records
BO06216.3prime Sequence
791 bp (790 high quality bases) assembled on 2005-12-03
> BO06216.3prime
ATGGTCTAGAAAGCTTGCGGCTGCCTGCTTGCTTCTCTTCTTCTCGCACT
CCTCGGGCACGGCTTTGCCGGAGGTGACGCCGCCGTCCGACGCGGGTCCC
GTTTCGGAAACAGTCTCTGGAGGATGTTCAAGCACGTGGTCAATGATGCC
CAGCACTTTTGCCTCCTCGGGGGTCATGAAGTGGTCGCGCTCCATGCGTC
CGGACATCTCCTCGTACGTATTCTTGGCGTGCTTCACGTAGATGTTGGTC
AGCTGGCGCTTGATTTTGATAATTTCCTCAGCATGTATTAGGATGTCTGT
GGCTTGGCCTTGTGCGCCACCAGAGGGCTGATGTATCATTATTCGCGCGT
TGGGTAGGGAGTACCGCATGCCAGGAGCACCGGCCGCGAGCAGGAGGGAT
CCCATCGAGCAGGCCTGTCCAACGCACCAAGTTGCAATGGGTGGCTTGAC
GTACTGCATCGTATCGTAGATCGCCAAACCCGCTGTAACAACACCGCCGG
GCGAATTGATGTACAGATGGATCGGTTTGTTGACGTTCTCCGATTGCAGG
AACAGCAGTTGAGCCACCACAGTCGAACTGATGTCGTCGGTTATGTTGCC
CATAAGGCAAATTATACGCTCCTTCAGCAGACGTGAGAATATGTCGTAGG
CCCGCTCACCGCGGCCAGTTTGCTCGACCACCATGGGAATCAGGTTGATG
TTGCGAACAGAATTCGCCCGGCCGCCACATTGTACTGAACTAATTTGTAA
AAAGCGGCTAACAGCGGTTTTCAGCATGTCGACTGATAACT
BO06216.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-PA | 762 | CG5045-RA | 1..759 | 777..19 | 3795 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:25:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-RB | 1175 | CG5045-RB | 120..879 | 778..19 | 3800 | 100 | Minus |
CG5045-RA | 973 | CG5045-RA | 120..879 | 778..19 | 3800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:25:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10357010..10357436 | 735..309 | 2135 | 100 | Minus |
2L | 23513712 | 2L | 10357485..10357782 | 316..19 | 1460 | 99.3 | Minus |
2L | 23513712 | 2L | 10356914..10356959 | 778..733 | 230 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:25:44 has no hits.
BO06216.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:19 Download gff for
BO06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:44 Download gff for
BO06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-PA | 1..762 | 15..777 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:59:01 Download gff for
BO06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 114..887 | 9..785 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:09 Download gff for
BO06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 114..887 | 9..785 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:09 Download gff for
BO06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10356908..10356956 | 736..785 | 94 | -> | Minus |
2L | 10357010..10357435 | 310..735 | 100 | -> | Minus |
2L | 10357492..10357790 | 9..309 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:59:01 Download gff for
BO06216.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10356908..10356956 | 736..785 | 94 | -> | Minus |
arm_2L | 10357010..10357435 | 310..735 | 100 | -> | Minus |
arm_2L | 10357492..10357790 | 9..309 | 98 | | Minus |
BO06216.5prime Sequence
791 bp (687 high quality bases) assembled on 2005-12-03
> BO06216.5prime
GAAGTTATCAGTCGACATGCTGAAAACCGCTGTTAGCCGCTTTTTACAAA
TTAGTTCAGTACAATGTGGCGGCCGGGCGAATTCTGTTCGCAACATCAAC
CTGATTCCCATGGTGGTCGAGCAAACTGGCCGCGGTGAGCGGGCCTACGA
CATATTCTCACGTCTGCTGAAGGAGCGTATAATTTGCCTTATGGGCAACA
TAACCGACGACATCAGTTCGACTGTGGTGGCTCAACTGCTGTTCCTGCAA
TCGGAGAACGTCAACAAACCGATCCATCTGTACATCAATTCGCCCGGCGG
TGTTGTTACAGCGGGTTTGGCGATCTACGATACGATGCAGTACGTCAAGC
CACCCATTGCAACTTGGTGCGTTGGACAGGCCTGCTCGATGGGATCCCTC
CTGCTCGCGGCCGGTGCTCCTGGCATGCGGTACTCCCTACCCAACGCGCG
AATAATGATACATCAGCCCTCTGGTGGCGCACAAGGCCAAGCCACAGACA
TCCTAATACATGCTGAGGAAATTATCAAAATCAAGCGCCAGCTGACCAAC
ATCTACGTGAAGCACGCCAAGAATACGTACGAGGAGATGTCCGGACGCAT
GGAGCGCGACCACTTCATGACCCCCGAGGAGGCAAAAGTGCTGGGCATCA
TTGACCACGTGCTTGAACATCCTCCAGAGACTGTTTCCGAAACGGGACCC
GCGTCGGACGGCGGCGTCACCTCCGGCAAAGCCGTGCCCGAGGAGTGCGA
GAAGAAGAGAAGCAAGCAGGCAGCCGCAAGCTTTCTAGACC
BO06216.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-PA | 762 | CG5045-RA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-RB | 1175 | CG5045-RB | 120..879 | 16..775 | 3800 | 100 | Plus |
CG5045-RA | 973 | CG5045-RA | 120..879 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10357010..10357436 | 59..485 | 2135 | 100 | Plus |
2L | 23513712 | 2L | 10357485..10357782 | 478..775 | 1460 | 99.3 | Plus |
2L | 23513712 | 2L | 10356914..10356959 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:06:15 has no hits.
BO06216.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:20 Download gff for
BO06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:46 Download gff for
BO06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-PA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:16 Download gff for
BO06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 114..887 | 9..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:38 Download gff for
BO06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 114..887 | 9..785 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:38 Download gff for
BO06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10356908..10356956 | 9..58 | 94 | -> | Plus |
2L | 10357010..10357435 | 59..484 | 100 | -> | Plus |
2L | 10357492..10357790 | 485..785 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:16 Download gff for
BO06216.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10356908..10356956 | 9..58 | 94 | -> | Plus |
arm_2L | 10357010..10357435 | 59..484 | 100 | -> | Plus |
arm_2L | 10357492..10357790 | 485..785 | 98 | | Plus |
BO06216.complete Sequence
793 bp (793 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630304
> BO06216.complete
GAAGTTATCAGTCGACATGCTGAAAACCGCTGTTAGCCGCTTTTTACAAA
TTAGTTCAGTACAATGTGGCGGCCGGGCGAATTCTGTTCGCAACATCAAC
CTGATTCCCATGGTGGTCGAGCAAACTGGCCGCGGTGAGCGGGCCTACGA
CATATTCTCACGTCTGCTGAAGGAGCGTATAATTTGCCTTATGGGCAACA
TAACCGACGACATCAGTTCGACTGTGGTGGCTCAACTGCTGTTCCTGCAA
TCGGAGAACGTCAACAAACCGATCCATCTGTACATCAATTCGCCCGGCGG
TGTTGTTACAGCGGGTTTGGCGATCTACGATACGATGCAGTACGTCAAGC
CACCCATTGCAACTTGGTGCGTTGGACAGGCCTGCTCGATGGGATCCCTC
CTGCTCGCGGCCGGTGCTCCTGGCATGCGGTACTCCCTACCCAACGCGCG
AATAATGATACATCAGCCCTCTGGTGGCGCACAAGGCCAAGCCACAGACA
TCCTAATACATGCTGAGGAAATTATCAAAATCAAGCGCCAGCTGACCAAC
ATCTACGTGAAGCACGCCAAGAATACGTACGAGGAGATGTCCGGACGCAT
GGAGCGCGACCACTTCATGACCCCCGAGGAGGCAAAAGTGCTGGGCATCA
TTGACCACGTGCTTGAACATCCTCCAGAGACTGTTTCCGAAACGGGACCC
GCGTCGGACGGCGGCGTCACCTCCGGCAAAGCCGTGCCCGAGGAGTGCGA
GAAGAAGAGAAGCAAGCAGGCAGCCGCAAGCTTTCTAGACCAT
BO06216.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-RB | 762 | CG5045-PB | 1..759 | 17..775 | 3795 | 100 | Plus |
CG5045-RA | 762 | CG5045-PA | 1..759 | 17..775 | 3795 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-RB | 1175 | CG5045-RB | 120..879 | 16..775 | 3800 | 100 | Plus |
CG5045-RA | 973 | CG5045-RA | 120..879 | 16..775 | 3800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10357010..10357436 | 59..485 | 2135 | 100 | Plus |
2L | 23513712 | 2L | 10357485..10357782 | 478..775 | 1460 | 99.3 | Plus |
2L | 23513712 | 2L | 10356914..10356959 | 16..61 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:22:22 has no hits.
BO06216.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:17 Download gff for
BO06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 1..762 | 17..779 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:00 Download gff for
BO06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 166..939 | 9..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:18 Download gff for
BO06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 121..879 | 17..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:17 Download gff for
BO06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 166..939 | 9..785 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:41 Download gff for
BO06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5045-RA | 121..879 | 17..777 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:41 Download gff for
BO06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10356915..10356956 | 17..58 | 100 | -> | Plus |
2L | 10357010..10357435 | 59..484 | 100 | -> | Plus |
2L | 10357492..10357782 | 485..777 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:18 Download gff for
BO06216.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10356915..10356956 | 17..58 | 100 | -> | Plus |
arm_2L | 10357010..10357435 | 59..484 | 100 | -> | Plus |
arm_2L | 10357492..10357782 | 485..777 | 99 | | Plus |
BO06216.pep Sequence
Translation from 16 to 793
> BO06216.pep
MLKTAVSRFLQISSVQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRL
LKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAG
LAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQ
PSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMSGRMERDHF
MTPEEAKVLGIIDHVLEHPPETVSETGPASDGGVTSGKAVPEECEKKRSK
QAAASFLDH
BO06216.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5045-PB | 253 | CG5045-PB | 1..253 | 1..253 | 1297 | 100 | Plus |
CG5045-PA | 253 | CG5045-PA | 1..253 | 1..253 | 1297 | 100 | Plus |