Clone BO06216 Report

Search the DGRC for BO06216

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:16
Vector:pDNR-Dual
Associated Gene/TranscriptCG5045-RA
Protein status:BO06216.pep: validated full length
Sequenced Size:793

Clone Sequence Records

BO06216.3prime Sequence

791 bp (790 high quality bases) assembled on 2005-12-03

> BO06216.3prime
ATGGTCTAGAAAGCTTGCGGCTGCCTGCTTGCTTCTCTTCTTCTCGCACT
CCTCGGGCACGGCTTTGCCGGAGGTGACGCCGCCGTCCGACGCGGGTCCC
GTTTCGGAAACAGTCTCTGGAGGATGTTCAAGCACGTGGTCAATGATGCC
CAGCACTTTTGCCTCCTCGGGGGTCATGAAGTGGTCGCGCTCCATGCGTC
CGGACATCTCCTCGTACGTATTCTTGGCGTGCTTCACGTAGATGTTGGTC
AGCTGGCGCTTGATTTTGATAATTTCCTCAGCATGTATTAGGATGTCTGT
GGCTTGGCCTTGTGCGCCACCAGAGGGCTGATGTATCATTATTCGCGCGT
TGGGTAGGGAGTACCGCATGCCAGGAGCACCGGCCGCGAGCAGGAGGGAT
CCCATCGAGCAGGCCTGTCCAACGCACCAAGTTGCAATGGGTGGCTTGAC
GTACTGCATCGTATCGTAGATCGCCAAACCCGCTGTAACAACACCGCCGG
GCGAATTGATGTACAGATGGATCGGTTTGTTGACGTTCTCCGATTGCAGG
AACAGCAGTTGAGCCACCACAGTCGAACTGATGTCGTCGGTTATGTTGCC
CATAAGGCAAATTATACGCTCCTTCAGCAGACGTGAGAATATGTCGTAGG
CCCGCTCACCGCGGCCAGTTTGCTCGACCACCATGGGAATCAGGTTGATG
TTGCGAACAGAATTCGCCCGGCCGCCACATTGTACTGAACTAATTTGTAA
AAAGCGGCTAACAGCGGTTTTCAGCATGTCGACTGATAACT

BO06216.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-PA 762 CG5045-RA 1..759 777..19 3795 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:25:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-RB 1175 CG5045-RB 120..879 778..19 3800 100 Minus
CG5045-RA 973 CG5045-RA 120..879 778..19 3800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:25:40
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10357010..10357436 735..309 2135 100 Minus
2L 23513712 2L 10357485..10357782 316..19 1460 99.3 Minus
2L 23513712 2L 10356914..10356959 778..733 230 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:25:44 has no hits.

BO06216.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:19 Download gff for BO06216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-PA 1..762 15..777 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:44 Download gff for BO06216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-PA 1..762 15..777 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:59:01 Download gff for BO06216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 114..887 9..785 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:10:09 Download gff for BO06216.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 114..887 9..785 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:10:09 Download gff for BO06216.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 10356908..10356956 736..785 94 -> Minus
2L 10357010..10357435 310..735 100 -> Minus
2L 10357492..10357790 9..309 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:59:01 Download gff for BO06216.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10356908..10356956 736..785 94 -> Minus
arm_2L 10357010..10357435 310..735 100 -> Minus
arm_2L 10357492..10357790 9..309 98   Minus

BO06216.5prime Sequence

791 bp (687 high quality bases) assembled on 2005-12-03

> BO06216.5prime
GAAGTTATCAGTCGACATGCTGAAAACCGCTGTTAGCCGCTTTTTACAAA
TTAGTTCAGTACAATGTGGCGGCCGGGCGAATTCTGTTCGCAACATCAAC
CTGATTCCCATGGTGGTCGAGCAAACTGGCCGCGGTGAGCGGGCCTACGA
CATATTCTCACGTCTGCTGAAGGAGCGTATAATTTGCCTTATGGGCAACA
TAACCGACGACATCAGTTCGACTGTGGTGGCTCAACTGCTGTTCCTGCAA
TCGGAGAACGTCAACAAACCGATCCATCTGTACATCAATTCGCCCGGCGG
TGTTGTTACAGCGGGTTTGGCGATCTACGATACGATGCAGTACGTCAAGC
CACCCATTGCAACTTGGTGCGTTGGACAGGCCTGCTCGATGGGATCCCTC
CTGCTCGCGGCCGGTGCTCCTGGCATGCGGTACTCCCTACCCAACGCGCG
AATAATGATACATCAGCCCTCTGGTGGCGCACAAGGCCAAGCCACAGACA
TCCTAATACATGCTGAGGAAATTATCAAAATCAAGCGCCAGCTGACCAAC
ATCTACGTGAAGCACGCCAAGAATACGTACGAGGAGATGTCCGGACGCAT
GGAGCGCGACCACTTCATGACCCCCGAGGAGGCAAAAGTGCTGGGCATCA
TTGACCACGTGCTTGAACATCCTCCAGAGACTGTTTCCGAAACGGGACCC
GCGTCGGACGGCGGCGTCACCTCCGGCAAAGCCGTGCCCGAGGAGTGCGA
GAAGAAGAGAAGCAAGCAGGCAGCCGCAAGCTTTCTAGACC

BO06216.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-PA 762 CG5045-RA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-RB 1175 CG5045-RB 120..879 16..775 3800 100 Plus
CG5045-RA 973 CG5045-RA 120..879 16..775 3800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10357010..10357436 59..485 2135 100 Plus
2L 23513712 2L 10357485..10357782 478..775 1460 99.3 Plus
2L 23513712 2L 10356914..10356959 16..61 230 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:06:15 has no hits.

BO06216.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:20 Download gff for BO06216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-PA 1..762 17..779 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:46 Download gff for BO06216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-PA 1..762 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:16 Download gff for BO06216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 114..887 9..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:03:38 Download gff for BO06216.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 114..887 9..785 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:03:38 Download gff for BO06216.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 10356908..10356956 9..58 94 -> Plus
2L 10357010..10357435 59..484 100 -> Plus
2L 10357492..10357790 485..785 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:16 Download gff for BO06216.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10356908..10356956 9..58 94 -> Plus
arm_2L 10357010..10357435 59..484 100 -> Plus
arm_2L 10357492..10357790 485..785 98   Plus

BO06216.complete Sequence

793 bp (793 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630304

> BO06216.complete
GAAGTTATCAGTCGACATGCTGAAAACCGCTGTTAGCCGCTTTTTACAAA
TTAGTTCAGTACAATGTGGCGGCCGGGCGAATTCTGTTCGCAACATCAAC
CTGATTCCCATGGTGGTCGAGCAAACTGGCCGCGGTGAGCGGGCCTACGA
CATATTCTCACGTCTGCTGAAGGAGCGTATAATTTGCCTTATGGGCAACA
TAACCGACGACATCAGTTCGACTGTGGTGGCTCAACTGCTGTTCCTGCAA
TCGGAGAACGTCAACAAACCGATCCATCTGTACATCAATTCGCCCGGCGG
TGTTGTTACAGCGGGTTTGGCGATCTACGATACGATGCAGTACGTCAAGC
CACCCATTGCAACTTGGTGCGTTGGACAGGCCTGCTCGATGGGATCCCTC
CTGCTCGCGGCCGGTGCTCCTGGCATGCGGTACTCCCTACCCAACGCGCG
AATAATGATACATCAGCCCTCTGGTGGCGCACAAGGCCAAGCCACAGACA
TCCTAATACATGCTGAGGAAATTATCAAAATCAAGCGCCAGCTGACCAAC
ATCTACGTGAAGCACGCCAAGAATACGTACGAGGAGATGTCCGGACGCAT
GGAGCGCGACCACTTCATGACCCCCGAGGAGGCAAAAGTGCTGGGCATCA
TTGACCACGTGCTTGAACATCCTCCAGAGACTGTTTCCGAAACGGGACCC
GCGTCGGACGGCGGCGTCACCTCCGGCAAAGCCGTGCCCGAGGAGTGCGA
GAAGAAGAGAAGCAAGCAGGCAGCCGCAAGCTTTCTAGACCAT

BO06216.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-RB 762 CG5045-PB 1..759 17..775 3795 100 Plus
CG5045-RA 762 CG5045-PA 1..759 17..775 3795 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:22:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-RB 1175 CG5045-RB 120..879 16..775 3800 100 Plus
CG5045-RA 973 CG5045-RA 120..879 16..775 3800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:22:21
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10357010..10357436 59..485 2135 100 Plus
2L 23513712 2L 10357485..10357782 478..775 1460 99.3 Plus
2L 23513712 2L 10356914..10356959 16..61 230 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:22:22 has no hits.

BO06216.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:17 Download gff for BO06216.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 1..762 17..779 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:00 Download gff for BO06216.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 166..939 9..785 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:23:18 Download gff for BO06216.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 121..879 17..777 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:17 Download gff for BO06216.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 166..939 9..785 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:30:41 Download gff for BO06216.complete
Subject Subject Range Query Range Percent Splice Strand
CG5045-RA 121..879 17..777 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:30:41 Download gff for BO06216.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10356915..10356956 17..58 100 -> Plus
2L 10357010..10357435 59..484 100 -> Plus
2L 10357492..10357782 485..777 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:23:18 Download gff for BO06216.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10356915..10356956 17..58 100 -> Plus
arm_2L 10357010..10357435 59..484 100 -> Plus
arm_2L 10357492..10357782 485..777 99   Plus

BO06216.pep Sequence

Translation from 16 to 793

> BO06216.pep
MLKTAVSRFLQISSVQCGGRANSVRNINLIPMVVEQTGRGERAYDIFSRL
LKERIICLMGNITDDISSTVVAQLLFLQSENVNKPIHLYINSPGGVVTAG
LAIYDTMQYVKPPIATWCVGQACSMGSLLLAAGAPGMRYSLPNARIMIHQ
PSGGAQGQATDILIHAEEIIKIKRQLTNIYVKHAKNTYEEMSGRMERDHF
MTPEEAKVLGIIDHVLEHPPETVSETGPASDGGVTSGKAVPEECEKKRSK
QAAASFLDH

BO06216.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG5045-PB 253 CG5045-PB 1..253 1..253 1297 100 Plus
CG5045-PA 253 CG5045-PA 1..253 1..253 1297 100 Plus