Clone Sequence Records
BO06217.3prime Sequence
969 bp (776 high quality bases) assembled on 2005-12-03
> BO06217.3prime
ATGGTCTAGAAAGCTTGCTTCCTGTTGGGCGCACTTGTCGTAGTTGGTGA
CCAGTTGGCGGTACAGATTGGATACCCTGGCGCTCTTGTGGCACACGGTT
CCACCACCACGATGCAACTGACCTTCTTGCCGGTTGATGTCGCCCACACA
AATCCAATCTCCGCCGCCAACTCGCCAATGGTAGATCAAAATGCCTGTGG
GACGAGATACCGCCCACTTGGAGTGATCTTGTGTGGTCTTAAAGTCCACC
GATAGCTCCGGATTGGAAATGGATTCCACATTGAGAACCTTATCGGACTT
ATCGCAGCTATTCGGTAAGTTGCCGGCACCGTCGCGCCACGCCTCCACAA
AAAGACTGACATCCAGAGTGGGTGCGACCACATCGGCGTACAGCTCCACA
TTGGCGCGTCCACTCTTGCCAAACAGCCGGAACTTCTTGCCGTCCAAGCT
GCGCACCTCCAAGTCCTTCTGGAACGGTGATTCCGTCCGCCACTGACCAT
GCAGAGCCCTTTCCAGGCTCGGGAACAGCTCATCGGAGCGAGTGGCCAGC
GGGTTGCGTTGATAGTAGAAGTGCGGTTCATTGTACACCAGAATCTGACC
AACCTTCTCCAAATCCTCGCCCTTCAGTGTGACGCAGAGCATGCTCTGTG
CGTACTGCTCGCCGGATGTGGGATAGCTGTAGTCCGGAATTGTTGGAAAT
TTGGGCACCGAGTGGACAATCCAAATAGCCGTCTCCCCATCACTGGCCAC
CACTCCTTTGGCATGACCACCGCTGCTGAAAACCGTGCCATTCGGCTGTT
GATCGTTGTAGGCGGCCAGCAGAGTGTGGCTGGGATCGTCGTTCAAGGGG
TTAAGGGTCTGGNCAGGCAGCGATAGGGGATCACTAATGAACTTTCCCGA
CATCTGCCANGTGTCATAGTTCTGGCTGGTCACGTACAGGGTACTCAAGC
CACTGGTGTCCTTGCCCAA
BO06217.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7780-PA | 1101 | DNaseII-RA | 177..1098 | 940..19 | 4572 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNaseII-RA | 1228 | CG7780-RA | 186..1136 | 969..19 | 4688 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:18:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18020119..18021069 | 969..19 | 4673 | 99.4 | Minus |
Blast to na_te.dros performed on 2015-02-11 16:18:29 has no hits.
BO06217.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:21 Download gff for
BO06217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7780-PA | 150..1101 | 18..967 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:48 Download gff for
BO06217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7780-PA | 150..1101 | 18..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:38:51 Download gff for
BO06217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 188..1136 | 19..967 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:37 Download gff for
BO06217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 188..1136 | 19..967 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:37 Download gff for
BO06217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18020121..18021069 | 19..967 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:38:51 Download gff for
BO06217.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13845843..13846791 | 19..967 | 99 | | Minus |
BO06217.5prime Sequence
837 bp (836 high quality bases) assembled on 2005-12-03
> BO06217.5prime
GAAGTTATCAGTCGACATGCGATCTCTGTGCTTCGTTTTGCTGTTCGTTT
GGTTTTTCTACCAAAACGAAGCTAAGTCTAAGGTTTCCTGTAAGGATGAA
GCTGGAAACGATGTAGATTGGTGGCACCTTTACAAACTGCCCAAGCACTA
CCAGCACAACGATTTGGGCAAGGACACCAGTGGCTTGAAGTACCTGTACG
TGACCAGCCAGAACTATGACACCTGGCAGATGTCGGGAAAGTTCATTAGT
GATCCCCTATCGCTGCCTGCCCAGACCCTTAACCCCTTGAACGACGATCC
CAGCCACACTCTGCTGGCCGCCTACAACGATCAACAGCCGAATGGCACGG
TTTTCAGCAGCGGTGGTCATGCCAAAGGAGTGGTGGCCAGTGATGGGGAG
ACGGCTATTTGGATTGTCCACTCGGTGCCCAAATTTCCAACAATTCCGGA
CTACAGCTATCCCACATCCGGCGAGCAGTACGCACAGAGCATGCTCTGCG
TCACACTGAAGGGCGAGGATTTGGAGAAGGTTGGTCAGATTCTGGTGTAC
AATGAACCGCACTTCTACTATCAACGCAACCCGCTGGCCACTCGCTCCGA
TGAGCTGTTCCCGAGCCTGGAAAGGGCTCTGCATGGTCAGTGGCGGACGG
AATCACCGTTCCAGAAGGACTTGGAGGTGCGCAGCTTGGACGGCAAGAAG
TTCCGGCTGTTTGGCAAGAGTGGACGCGCCAATGTGGAGCTGTACGCCGA
TGTGGTCGCACCCACTCTGGATGTCAGTCTTTTTGTGGAGGCGTGGCGCG
ACGGTGCCGGCAACTTACCGAATAGCTGCGATAAGTC
BO06217.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7780-PA | 1101 | DNaseII-RA | 1..821 | 17..837 | 4105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNaseII-RA | 1228 | CG7780-RA | 39..859 | 17..837 | 4105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:53:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18020075..18020792 | 120..837 | 3590 | 100 | Plus |
| 3R | 32079331 | 3R | 18019413..18019518 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:53:54 has no hits.
BO06217.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:22 Download gff for
BO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7780-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:50 Download gff for
BO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7780-PA | 1..821 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:35 Download gff for
BO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 39..859 | 17..837 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:23:31 Download gff for
BO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 39..859 | 17..837 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:23:31 Download gff for
BO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18019413..18019516 | 17..120 | 100 | -> | Plus |
| 3R | 18020076..18020792 | 121..837 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:35 Download gff for
BO06217.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13845135..13845238 | 17..120 | 100 | -> | Plus |
| arm_3R | 13845798..13846514 | 121..837 | 100 | | Plus |
BO06217.complete Sequence
1132 bp (1132 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630305
> BO06217.complete
GAAGTTATCAGTCGACATGCGATCTCTGTGCTTCGTTTTGCTGTTCGTTT
GGTTTTTCTACCAAAACGAAGCTAAGTCTAAGGTTTCCTGTAAGGATGAA
GCTGGAAACGATGTAGATTGGTGGCACCTTTACAAACTGCCCAAGCACTA
CCAGCACAACGATTTGGGCAAGGACACCAGTGGCTTGAAGTACCTGTACG
TGACCAGCCAGAACTATGACACCTGGCAGATGTCGGGAAAGTTCATTAGT
GATCCCCTATCGCTGCCTGCCCAGACCCTTAACCCCTTGAACGACGATCC
CAGCCACACTCTGCTGGCCGCCTACAACGATCAACAGCCGAATGGCACGG
TTTTCAGCAGCGGTGGTCATGCCAAAGGAGTGGTGGCCAGTGATGGGGAG
ACGGCTATTTGGATTGTCCACTCGGTGCCCAAATTTCCAACAATTCCGGA
CTACAGCTATCCCACATCCGGCGAGCAGTACGCACAGAGCATGCTCTGCG
TCACACTGAAGGGCGAGGATTTGGAGAAGGTTGGTCAGATTCTGGTGTAC
AATGAACCGCACTTCTACTATCAACGCAACCCGCTGGCCACTCGCTCCGA
TGAGCTGTTCCCGAGCCTGGAAAGGGCTCTGCATGGTCAGTGGCGGACGG
AATCACCGTTCCAGAAGGACTTGGAGGTGCGCAGCTTGGACGGCAAGAAG
TTCCGGCTGTTTGGCAAGAGTGGACGCGCCAATGTGGAGCTGTACGCCGA
TGTGGTCGCACCCACTCTGGATGTCAGTCTTTTTGTGGAGGCGTGGCGCG
ACGGTGCCGGCAACTTACCGAATAGCTGCGATAAGTCCGATAAGGTTCTC
AATGTGGAATCCATTTCCAATCCGGAGCTATCGGTGGACTTTAAGACCAC
ACAAGATCACTCCAAGTGGGCGGTATCTCGTCCCACAGGCATTTTGATCT
ACCATTGGCGAGTTGGCGGCGGAGATTGGATTTGTGTGGGCGACATCAAC
CGGCAAGAAGGTCAGTTGCATCGTGGTGGTGGAACCGTGTGCCACAAGAG
CGCCAGGGTATCCAATCTGTACCGCCAACTGGTCACCAACTACGACAAGT
GCGCCCAACAGGAAGCAAGCTTTCTAGACCAT
BO06217.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:36:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNaseII-RA | 1101 | CG7780-PA | 1..1098 | 17..1114 | 5490 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:36:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNaseII-RA | 1228 | CG7780-RA | 39..1136 | 17..1114 | 5490 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 18020075..18021069 | 120..1114 | 4975 | 100 | Plus |
| 3R | 32079331 | 3R | 18019413..18019518 | 17..122 | 530 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:36:32 has no hits.
BO06217.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:18 Download gff for
BO06217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 1..1101 | 17..1115 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:02 Download gff for
BO06217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 37..1134 | 17..1114 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:56:38 Download gff for
BO06217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 39..1136 | 17..1116 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:18 Download gff for
BO06217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 37..1134 | 17..1114 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:22:28 Download gff for
BO06217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| DNaseII-RA | 39..1136 | 17..1116 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:22:28 Download gff for
BO06217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 18019413..18019516 | 17..120 | 100 | -> | Plus |
| 3R | 18020076..18021069 | 121..1116 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:56:38 Download gff for
BO06217.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 13845135..13845238 | 17..120 | 100 | -> | Plus |
| arm_3R | 13845798..13846791 | 121..1116 | 99 | | Plus |
BO06217.pep Sequence
Translation from 16 to 1132
> BO06217.pep
MRSLCFVLLFVWFFYQNEAKSKVSCKDEAGNDVDWWHLYKLPKHYQHNDL
GKDTSGLKYLYVTSQNYDTWQMSGKFISDPLSLPAQTLNPLNDDPSHTLL
AAYNDQQPNGTVFSSGGHAKGVVASDGETAIWIVHSVPKFPTIPDYSYPT
SGEQYAQSMLCVTLKGEDLEKVGQILVYNEPHFYYQRNPLATRSDELFPS
LERALHGQWRTESPFQKDLEVRSLDGKKFRLFGKSGRANVELYADVVAPT
LDVSLFVEAWRDGAGNLPNSCDKSDKVLNVESISNPELSVDFKTTQDHSK
WAVSRPTGILIYHWRVGGGDWICVGDINRQEGQLHRGGGTVCHKSARVSN
LYRQLVTNYDKCAQQEASFLDH
BO06217.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| DNaseII-PA | 366 | CG7780-PA | 1..366 | 1..366 | 1986 | 100 | Plus |
