Clone Sequence Records
BO06220.3prime Sequence
623 bp (622 high quality bases) assembled on 2005-12-03
> BO06220.3prime
ATGGTCTAGAAAGCTTGCACAGTAACACGTAGACGCGCTTGCCTCCAGAT
CCCGATCGCTGGCGATGTCCAGACCGGCGGAGGCATTGCCATTGTTGAAG
TATTCGGAGGAGACGATCTTCTCCACCACATCTTTGAACACATCGCTGAC
GAACTGATCGCATTTGGCTGAGGTCTCGATGAAGAGCGCCCTGTGCTTCC
TGGCAAACTTTCGACCCTCCTCGCGATCCACAACTCGCTCCTCGTCGATC
TTGTTGCCTACCACAATGATGGCAATGTTGGGATTGTCGCTGTAGCTATC
CAGTTCAGCCAGCCAGGTTTCCAGCTTGACCAGGCTGTCCCTGCTGGTGA
TGTCGTACACTAGAATGGCGCCCAGAGCCTTCCGATAGAAACTGGGCGTC
AGGCTGCGGAATCTCTCGGCGCCCGCCGTATCCCACAGGGCCACCTTGTA
GTCTATGCCGTCCACCTGCATCACTTTGCTCTTGAAGTCCATGCCAATCG
TGACGTCATGGTTCTGGTCGAACTTGTTCTCCACGAAGCGACGTATCAAA
CTGGACTTGCCCACGCCGCTTTCCCCGATCACCAGCAGCTTGATAGCCCG
ATCAGCCATGTCGACTGATAACT
BO06220.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3129-PA | 594 | Rab-RP4-RA | 1..591 | 609..19 | 2955 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:05:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab18-RA | 833 | CG3129-RA | 152..742 | 609..19 | 2955 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:05:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5671081..5671515 | 118..552 | 2175 | 100 | Plus |
X | 23542271 | X | 5670918..5671018 | 19..119 | 505 | 100 | Plus |
X | 23542271 | X | 5671603..5671661 | 551..609 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:05:49 has no hits.
BO06220.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:28 Download gff for
BO06220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3129-PA | 1..594 | 16..609 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:56 Download gff for
BO06220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3129-PA | 1..594 | 16..609 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:38 Download gff for
BO06220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 146..742 | 19..617 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:13 Download gff for
BO06220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 146..742 | 19..617 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:13 Download gff for
BO06220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5671603..5671665 | 551..617 | 94 | | Plus |
X | 5670918..5671016 | 19..117 | 100 | <- | Plus |
X | 5671081..5671513 | 118..550 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:38 Download gff for
BO06220.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5564951..5565049 | 19..117 | 100 | <- | Plus |
arm_X | 5565114..5565546 | 118..550 | 100 | <- | Plus |
arm_X | 5565636..5565698 | 551..617 | 94 | | Plus |
BO06220.5prime Sequence
623 bp (622 high quality bases) assembled on 2005-12-03
> BO06220.5prime
GAAGTTATCAGTCGACATGGCTGATCGGGCTATCAAGCTGCTGGTGATCG
GGGAAAGCGGCGTGGGCAAGTCCAGTTTGATACGTCGCTTCGTGGAGAAC
AAGTTCGACCAGAACCATGACGTCACGATTGGCATGGACTTCAAGAGCAA
AGTGATGCAGGTGGACGGCATAGACTACAAGGTGGCCCTGTGGGATACGG
CGGGCGCCGAGAGATTCCGCAGCCTGACGCCCAGTTTCTATCGGAAGGCT
CTGGGCGCCATTCTAGTGTACGACATCACCAGCAGGGACAGCCTGGTCAA
GCTGGAAACCTGGCTGGCTGAACTGGATAGCTACAGCGACAATCCCAACA
TTGCCATCATTGTGGTAGGCAACAAGATCGACGAGGAGCGAGTTGTGGAT
CGCGAGGAGGGTCGAAAGTTTGCCAGGAAGCACAGGGCGCTCTTCATCGA
GACCTCAGCCAAATGCGATCAGTTCGTCAGCGATGTGTTCAAAGATGTGG
TGGAGAAGATCGTCTCCTCCGAATACTTCAACAATGGCAATGCCTCCGCC
GGTCTGGACATCGCCAGCGATCGGGATCTGGAGGCAAGCGCGTCTACGTG
TTACTGTGCAAGCTTTCTAGACC
BO06220.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3129-PA | 594 | Rab-RP4-RA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:35:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab18-RA | 833 | CG3129-RA | 152..742 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:35:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5671081..5671515 | 508..74 | 2175 | 100 | Minus |
X | 23542271 | X | 5670918..5671018 | 607..507 | 505 | 100 | Minus |
X | 23542271 | X | 5671603..5671661 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:35:14 has no hits.
BO06220.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:29 Download gff for
BO06220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3129-PA | 1..594 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:58 Download gff for
BO06220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3129-PA | 1..594 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:16 Download gff for
BO06220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 146..742 | 9..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:09:15 Download gff for
BO06220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 146..742 | 9..607 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:09:15 Download gff for
BO06220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5671603..5671665 | 9..75 | 94 | | Minus |
X | 5670918..5671016 | 509..607 | 100 | <- | Minus |
X | 5671081..5671513 | 76..508 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:16 Download gff for
BO06220.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5564951..5565049 | 509..607 | 100 | <- | Minus |
arm_X | 5565114..5565546 | 76..508 | 100 | <- | Minus |
arm_X | 5565636..5565698 | 9..75 | 94 | | Minus |
BO06220.complete Sequence
625 bp (625 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630306
> BO06220.complete
GAAGTTATCAGTCGACATGGCTGATCGGGCTATCAAGCTGCTGGTGATCG
GGGAAAGCGGCGTGGGCAAGTCCAGTTTGATACGTCGCTTCGTGGAGAAC
AAGTTCGACCAGAACCATGACGTCACGATTGGCATGGACTTCAAGAGCAA
AGTGATGCAGGTGGACGGCATAGACTACAAGGTGGCCCTGTGGGATACGG
CGGGCGCCGAGAGATTCCGCAGCCTGACGCCCAGTTTCTATCGGAAGGCT
CTGGGCGCCATTCTAGTGTACGACATCACCAGCAGGGACAGCCTGGTCAA
GCTGGAAACCTGGCTGGCTGAACTGGATAGCTACAGCGACAATCCCAACA
TTGCCATCATTGTGGTAGGCAACAAGATCGACGAGGAGCGAGTTGTGGAT
CGCGAGGAGGGTCGAAAGTTTGCCAGGAAGCACAGGGCGCTCTTCATCGA
GACCTCAGCCAAATGCGATCAGTTCGTCAGCGATGTGTTCAAAGATGTGG
TGGAGAAGATCGTCTCCTCCGAATACTTCAACAATGGCAATGCCTCCGCC
GGTCTGGACATCGCCAGCGATCGGGATCTGGAGGCAAGCGCGTCTACGTG
TTACTGTGCAAGCTTTCTAGACCAT
BO06220.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab18-RA | 594 | CG3129-PA | 1..591 | 17..607 | 2955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab18-RA | 833 | CG3129-RA | 152..742 | 17..607 | 2955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 5671081..5671515 | 508..74 | 2175 | 100 | Minus |
X | 23542271 | X | 5670918..5671018 | 607..507 | 505 | 100 | Minus |
X | 23542271 | X | 5671603..5671661 | 75..17 | 295 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:08:21 has no hits.
BO06220.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:08:33 Download gff for
BO06220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab-RP4-RA | 1..594 | 17..610 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:28:23 Download gff for
BO06220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab-RP4-RA | 143..739 | 9..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:39 Download gff for
BO06220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 152..742 | 17..609 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:08:33 Download gff for
BO06220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab-RP4-RA | 143..739 | 9..607 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:04:15 Download gff for
BO06220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Rab18-RA | 152..742 | 17..609 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:04:15 Download gff for
BO06220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 5670915..5671016 | 509..609 | 98 | <- | Minus |
X | 5671081..5671513 | 76..508 | 100 | <- | Minus |
X | 5671603..5671661 | 17..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:39 Download gff for
BO06220.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 5564948..5565049 | 509..609 | 98 | <- | Minus |
arm_X | 5565114..5565546 | 76..508 | 100 | <- | Minus |
arm_X | 5565636..5565694 | 17..75 | 100 | | Minus |
BO06220.pep Sequence
Translation from 16 to 625
> BO06220.pep
MADRAIKLLVIGESGVGKSSLIRRFVENKFDQNHDVTIGMDFKSKVMQVD
GIDYKVALWDTAGAERFRSLTPSFYRKALGAILVYDITSRDSLVKLETWL
AELDSYSDNPNIAIIVVGNKIDEERVVDREEGRKFARKHRALFIETSAKC
DQFVSDVFKDVVEKIVSSEYFNNGNASAGLDIASDRDLEASASTCYCASF
LDH
BO06220.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:37:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Rab18-PA | 197 | CG3129-PA | 1..197 | 1..197 | 998 | 100 | Plus |
Rab2-PB | 213 | CG3269-PB | 8..183 | 7..177 | 379 | 43.5 | Plus |
Rab2-PA | 213 | CG3269-PA | 8..183 | 7..177 | 379 | 43.5 | Plus |
Rab4-PA | 213 | CG4921-PA | 6..177 | 3..169 | 354 | 44.5 | Plus |
Rab4-PB | 213 | CG4921-PB | 6..177 | 3..169 | 354 | 44.5 | Plus |