Clone Sequence Records
BO06221.3prime Sequence
943 bp (875 high quality bases) assembled on 2005-12-03
> BO06221.3prime
ATGGTCTAGAAAGCTTGCTCTGGTTTCGTTGATGTACGTGGTCTCTTCGA
TACACGAGGCCTGCTCTTCGTTGAGGAGATCGGTGATGGAGTAGGCGGAC
AGGGGGCGTGAGAACCTCCGCTCGGAGAGAATATCATCGATGCTGGTCAC
CGGCGAGAGGCACTGGCAGTCCGGGCAGTCTTCCGGCTCCTCGGCACTCC
GGGCGATCACCTGGAATATATCCTCCATGCTGGTCTGCAGGCACAGGGAA
GGCGGCTTCCTCAGGAGAACCGGAGATCGGGAGTGCTCCAGTTCCGGGGA
ACTGGAGAGCGGGGAGGCCGTGGAGGGCGTGGCAGAGGTACCACGGGTTC
GTCTTGGAACCGGCACTGCCATGGGCTCCCAATCGTTGTGGCTGGATGCC
TTCTTGGAGGGCTCCTCCTCCAGTTCCTGCCACAGGTGCATCGTCTGCTC
GATGTGCTGCAGCTGAGCCGAGAGCTGACTGGCGATGCTGGTTTTCCGCG
AGACGCAGGGCGTCGAGTCTCTGGACTCATCGCTTGCTCCGAACATCCTG
ATCTCGGGAAGCGTTATGGGCGCAACGCGGCTCACCTGGCGCGTGTTGCC
CGTCTCAAACATCCTGGCTATCTTGGTGACGTTGCTCCGCTTAACGGGCG
CTGGACTAGGAGGTGGTAGCTCCGCTTTGGGCGCCACCTGCTGACGCTTG
GGATACACCCGGGTCACTGGCTTCCTGGCCTTGGGCTTCACCTTTCCGGC
GACCTGCTCCTGGCCCAGAACGTGGCAGCATAGCTCTGGGCCGTAGCAGC
GGTGAAACATGTTCCTGTTGGCCTCGTAGTCCGCGTCCGCGAAGCGTTTC
ATCCGGATGAGGGACTTCGGCAGCAGGGTGACTACCACGTAGGAGACGAG
GAGGTAAGGTAGCCATTCCGCATACTTCAGGGCGGTTTCCACG
BO06221.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-PB | 948 | CG1146-RB | 21..945 | 943..19 | 4575 | 99.7 | Minus |
| CG1146-PC | 948 | CG1146-RC | 21..945 | 943..19 | 4575 | 99.7 | Minus |
| CG1146-PA | 948 | CG1146-RA | 21..945 | 943..19 | 4575 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 1882 | CG1146-RD | 412..1336 | 943..19 | 4595 | 99.8 | Minus |
| CG1146-RA | 1903 | CG1146-RA | 433..1357 | 943..19 | 4595 | 99.8 | Minus |
| CG1146-RC | 1721 | CG1146-RC | 251..1175 | 943..19 | 4595 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2491143..2492067 | 943..19 | 4595 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:02:31 has no hits.
BO06221.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:30 Download gff for
BO06221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-PC | 21..948 | 16..943 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:13:59 Download gff for
BO06221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-PA | 21..948 | 16..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:05 Download gff for
BO06221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RB | 370..1294 | 19..943 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:06 Download gff for
BO06221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RC | 251..1175 | 19..943 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:06 Download gff for
BO06221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2491143..2492067 | 19..943 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:05 Download gff for
BO06221.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2491143..2492067 | 19..943 | 99 | | Minus |
BO06221.5prime Sequence
907 bp (859 high quality bases) assembled on 2005-12-03
> BO06221.5prime
GAAGTTATCAGTCGACATGACGGACTACACGGAATACGTGGAAACCGCCT
GGAAGTATGCGGAATGGCTACCTTACCTCCTCGTCTCCTACGTGGTAGTC
ACCCTGCTGCCGAAGTCCCTCATCCGGATGAAACGCTTCGCGGACGCGGA
CTACGAGGCCAACAGGAACATGTTTCACCGCTGCTACGGCCCAGAGCTAT
GCTGCCACGTTCTGGGCCAGGAGCAGGTCGCCGGAAAGGTGAAGCCCAAG
GCCAGGAAGCCAGTGACCCGGGTGTATCCCAAGCGTCAGCAGGTGGCGCC
CAAAGCGGAGCTACCACCTCCTAGTCCAGCGCCCGTTAAGCGGAGCAACG
TCACCAAGATAGCCAGGATGTTTGAGACGGGCAACACGCGCCAGGTGAGC
CGCGTTGCGCCCATAACGCTTCCCGAGATCAGGATGTTCGGAGCAAGCGA
TGAGTCCAGAGACTCGACGCCCTGCGTCTCGCGGAAAACCAGCATCGCCA
GTCAGCTCTCGGCTCAGCTGCAGCACATCGAGCAGACGATGCACCTGTGG
CAGGAACTGGAGGAGGAGCCCTCCAAGAAGGCATCCAGCCACAACGATTG
GGAGCCCATGGCAGTGCCGGTTCCAAGACGAACCCGTGGTACCTCTGCCA
CGCCCTCCACGGCCTCCCCGCTCTCCAGTTCCCCGGAACTGGAGCACTCC
CGATCTCCGGTTCTCCTGAGGAAGCCGCCTTCCCTGTGCCTGCAGACCAG
CATGGAGGATATATTCCAGGTGATCGCCCGGAGTGCCGAGGAGCCGGAAG
ACTGCCCGGACTGCCAGTGCCTCTCGCCGGTGACCAGCATCGATGATATT
CTCTCCGAGCGGAGGTTCTCACGCCCCCTGTCCGCCTACTCCATCACCGA
TCTCCTC
BO06221.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-PB | 948 | CG1146-RB | 1..891 | 17..907 | 4455 | 100 | Plus |
| CG1146-PC | 948 | CG1146-RC | 1..891 | 17..907 | 4455 | 100 | Plus |
| CG1146-PA | 948 | CG1146-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:58:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 1882 | CG1146-RD | 391..1282 | 16..907 | 4460 | 100 | Plus |
| CG1146-RA | 1903 | CG1146-RA | 412..1303 | 16..907 | 4460 | 100 | Plus |
| CG1146-RC | 1721 | CG1146-RC | 230..1121 | 16..907 | 4460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:58:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2491122..2492013 | 16..907 | 4460 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 02:58:06 has no hits.
BO06221.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:31 Download gff for
BO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-PC | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:00 Download gff for
BO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-PA | 1..891 | 17..907 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:05 Download gff for
BO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RB | 343..1240 | 10..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:29:46 Download gff for
BO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RC | 224..1121 | 10..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:29:46 Download gff for
BO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2491116..2492013 | 10..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:05 Download gff for
BO06221.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2491116..2492013 | 10..907 | 99 | | Plus |
BO06221.complete Sequence
979 bp (979 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630307
> BO06221.complete
GAAGTTATCAGTCGACATGACGGACTACACGGAATACGTGGAAACCGCCT
GGAAGTATGCGGAATGGCTACCTTACCTCCTCGTCTCCTACGTGGTAGTC
ACCCTGCTGCCGAAGTCCCTCATCCGGATGAAACGCTTCGCGGACGCGGA
CTACGAGGCCAACAGGAACATGTTTCACCGCTGCTACGGCCCAGAGCTAT
GCTGCCACGTTCTGGGCCAGGAGCAGGTCGCCGGAAAGGTGAAGCCCAAG
GCCAGGAAGCCAGTGACCCGGGTGTATCCCAAGCGTCAGCAGGTGGCGCC
CAAAGCGGAGCTACCACCTCCTAGTCCAGCGCCCGTTAAGCGGAGCAACG
TCACCAAGATAGCCAGGATGTTTGAGACGGGCAACACGCGCCAGGTGAGC
CGCGTTGCGCCCATAACGCTTCCCGAGATCAGGATGTTCGGAGCAAGCGA
TGAGTCCAGAGACTCGACGCCCTGCGTCTCGCGGAAAACCAGCATCGCCA
GTCAGCTCTCGGCTCAGCTGCAGCACATCGAGCAGACGATGCACCTGTGG
CAGGAACTGGAGGAGGAGCCCTCCAAGAAGGCATCCAGCCACAACGATTG
GGAGCCCATGGCAGTGCCGGTTCCAAGACGAACCCGTGGTACCTCTGCCA
CGCCCTCCACGGCCTCCCCGCTCTCCAGTTCCCCGGAACTGGAGCACTCC
CGATCTCCGGTTCTCCTGAGGAAGCCGCCTTCCCTGTGCCTGCAGACCAG
CATGGAGGATATATTCCAGGTGATCGCCCGGAGTGCCGAGGAGCCGGAAG
ACTGCCCGGACTGCCAGTGCCTCTCGCCGGTGACCAGCATCGATGATATT
CTCTCCGAGCGGAGGTTCTCACGCCCCCTGTCCGCCTACTCCATCACCGA
TCTCCTCAACGAAGAGCAGGCCTCGTGTATCGAAGAGACCACGTACATCA
ACGAAACCAGAGCAAGCTTTCTAGACCAT
BO06221.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 14:53:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 948 | CG1146-PD | 1..945 | 17..961 | 4725 | 100 | Plus |
| CG1146-RA | 948 | CG1146-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
| CG1146-RC | 948 | CG1146-PC | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 14:53:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-RD | 1882 | CG1146-RD | 391..1336 | 16..961 | 4730 | 100 | Plus |
| CG1146-RA | 1903 | CG1146-RA | 412..1357 | 16..961 | 4730 | 100 | Plus |
| CG1146-RC | 1721 | CG1146-RC | 230..1175 | 16..961 | 4730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 14:53:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2491122..2492067 | 16..961 | 4730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 14:53:07 has no hits.
BO06221.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:19 Download gff for
BO06221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:03 Download gff for
BO06221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RA | 399..1350 | 10..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:44:47 Download gff for
BO06221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RB | 350..1294 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:21 Download gff for
BO06221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RA | 399..1350 | 10..961 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:02:04 Download gff for
BO06221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1146-RC | 231..1175 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:02:04 Download gff for
BO06221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2491123..2492067 | 17..963 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:44:47 Download gff for
BO06221.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2491123..2492067 | 17..963 | 99 | | Plus |
BO06221.pep Sequence
Translation from 16 to 979
> BO06221.pep
MTDYTEYVETAWKYAEWLPYLLVSYVVVTLLPKSLIRMKRFADADYEANR
NMFHRCYGPELCCHVLGQEQVAGKVKPKARKPVTRVYPKRQQVAPKAELP
PPSPAPVKRSNVTKIARMFETGNTRQVSRVAPITLPEIRMFGASDESRDS
TPCVSRKTSIASQLSAQLQHIEQTMHLWQELEEEPSKKASSHNDWEPMAV
PVPRRTRGTSATPSTASPLSSSPELEHSRSPVLLRKPPSLCLQTSMEDIF
QVIARSAEEPEDCPDCQCLSPVTSIDDILSERRFSRPLSAYSITDLLNEE
QASCIEETTYINETRASFLDH
BO06221.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1146-PD | 315 | CG1146-PD | 1..315 | 1..315 | 1647 | 100 | Plus |
| CG1146-PA | 315 | CG1146-PA | 1..315 | 1..315 | 1647 | 100 | Plus |
| CG1146-PC | 315 | CG1146-PC | 1..315 | 1..315 | 1647 | 100 | Plus |
| CG1146-PB | 315 | CG1146-PB | 1..315 | 1..315 | 1647 | 100 | Plus |
