Clone Sequence Records
BO06233.3prime Sequence
872 bp (832 high quality bases) assembled on 2005-12-03
> BO06233.3prime
ATGGTCTAGAAAGCTTGCTTCAAAGCTGCGACCCATCCTGGACAGCACCG
GAGGCATCCACTCCTCGAACTCGGGAATATCGAACAGCGGGTGCTGGTTG
AGGATGTCGAAACGCACCACCTTGTACGTGGAGACGAGCCACTGGCCCAT
GCAGCGACTGTTGTCCTGCACATTGCCCATTCTCGAGGGTTCCACGGAAT
AGTCGCGTCGGAAGCGCATGAACACCTCGGCGAAGATCAGGGGATGGGGC
ACCCTTAACTGAGCGGGATCTATGAACTCCTTTAGCAGCTCCGTCATCTC
ACTAAGTTCCGCCGGCGAGCGAAAGTCATTGGATCTCCGCAGGGCCACGA
AGACCACGTCCAGGAAGGCGAAACGATGGTCGTAGTGCCGCAGCAGCTGC
ACCTTGAGCGGAATGGCCCGCCGGAAGTGCTCCTTCTCGAAGCGCATCAT
TTTGAGCCTCCAGTCGGGCGGATCATCCAACAGATCGTGCTTGATCTGCT
TGAAACCCATAGGCGTACTGCATCGCTCCACATTCCGATTGCGGCGGCGC
CTTACGAAGTCCGTAAAAACGGCGGCTGCCTGGCTCGAATTCTCAATGAA
CTTCTGCTCGGAGAAGTCCCAGTCCCAAAGGAGCTTCAGCCGGAGGAGAG
CCAACTTGGTGGTCAATCGGCGGGACTTATTTGCACCATTGGCACATCCT
TTCCCGAAGCACTCTGGTGATGTCCCGTTGAGGTCGCAGTTCGCCTGGAA
GCCCGAATCAAATGCCGCAGCACATGACCATAGCGGGTGCACTTGTCCAT
CAGCAACCGGTGTATCCACATCATTCCATAGTTTTATTTGTTTTGAATTT
TGTCTATTTAAAAGCCGGAATA
BO06233.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-PA | 879 | CG30412-RA | 32..876 | 863..19 | 4200 | 99.8 | Minus |
CG30412-PB | 906 | CG30412-RB | 251..903 | 671..19 | 3265 | 100 | Minus |
CG30412-PB | 906 | CG30412-RB | 1..154 | 824..671 | 770 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:53:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-RA | 1063 | CG30412-RA | 33..887 | 872..19 | 4235 | 99.8 | Minus |
CG30412-RC | 1072 | CG30412-RC | 33..896 | 872..19 | 4135 | 98.7 | Minus |
CG30412-RB | 1160 | CG30412-RB | 332..984 | 671..19 | 3265 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:53:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23318365..23319017 | 19..671 | 3265 | 100 | Plus |
2R | 25286936 | 2R | 23319114..23319306 | 671..863 | 950 | 99.5 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:53:41 has no hits.
BO06233.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:48 Download gff for
BO06233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-PA | 23..879 | 18..871 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:23 Download gff for
BO06233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-PA | 23..879 | 18..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:19 Download gff for
BO06233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 34..887 | 19..871 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:44:34 Download gff for
BO06233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 34..887 | 19..871 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:44:34 Download gff for
BO06233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23318365..23319016 | 19..670 | 100 | <- | Plus |
2R | 23319114..23319315 | 671..871 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:19 Download gff for
BO06233.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19205888..19206539 | 19..670 | 100 | <- | Plus |
arm_2R | 19206637..19206838 | 671..871 | 99 | | Plus |
BO06233.5prime Sequence
870 bp (842 high quality bases) assembled on 2005-12-03
> BO06233.5prime
GAAGTTATCAGTCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTT
TAAATAGACAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACA
CCGGTTGCTGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATT
TGATTCGGGCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGT
GCTTCGGGAAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACC
ACCAAGTTGGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTC
CGAGCAGAAGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGG
ACTTCGTAAGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCT
ATGGGTTTCAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTG
GAGGCTCAAAATGATGCGCTTCGAGAAGGAGCACTTCCGGCGGGCCATTC
CGCTCAAGGTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTG
GACGTGGTCTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGC
GGAACTTAGTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTC
AGTTAAGGGTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTC
CGACGCGACTATTCCGTGGAACCCTCGAGAATGGGCAATGTGCAGGACAA
CAGTCGCTGCATGGGCCAGTGGCTCGTCTCCACGTACAAGGTGGTGCGTT
TCGACATCCTCAACCAGCACCCGCTGTTCGATATTCCCGAGTTCGAGGAG
TGGATGCCTCCGGTGCTGTC
BO06233.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-PA | 879 | CG30412-RA | 1..854 | 17..870 | 4270 | 100 | Plus |
CG30412-PB | 906 | CG30412-RB | 251..881 | 240..870 | 3155 | 100 | Plus |
CG30412-PB | 906 | CG30412-RB | 1..154 | 87..240 | 770 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-RA | 1063 | CG30412-RA | 10..865 | 15..870 | 4280 | 100 | Plus |
CG30412-RC | 1072 | CG30412-RC | 10..874 | 15..870 | 4180 | 99 | Plus |
CG30412-RB | 1160 | CG30412-RB | 332..962 | 240..870 | 3155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:00:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23318387..23319017 | 870..240 | 3155 | 100 | Minus |
2R | 25286936 | 2R | 23319114..23319339 | 240..15 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:01:03 has no hits.
BO06233.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:49 Download gff for
BO06233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:25 Download gff for
BO06233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-PA | 1..854 | 17..870 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:29 Download gff for
BO06233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 8..865 | 12..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:03 Download gff for
BO06233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 8..865 | 12..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:03 Download gff for
BO06233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23319114..23319341 | 12..240 | 99 | | Minus |
2R | 23318387..23319016 | 241..870 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:29 Download gff for
BO06233.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19205910..19206539 | 241..870 | 100 | <- | Minus |
arm_2R | 19206637..19206864 | 12..240 | 99 | | Minus |
BO06233.complete Sequence
910 bp (910 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630308
> BO06233.complete
GAAGTTATCAGTCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTT
TAAATAGACAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACA
CCGGTTGCTGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATT
TGATTCGGGCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGT
GCTTCGGGAAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACC
ACCAAGTTGGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTC
CGAGCAGAAGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGG
ACTTCGTAAGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCT
ATGGGTTTCAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTG
GAGGCTCAAAATGATGCGCTTCGAGAAGGAGCACTTCCGGCGGGCCATTC
CGCTCAAGGTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTG
GACGTGGTCTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGC
GGAACTTAGTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTC
AGTTAAGGGTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTC
CGACGCGACTATTCCGTGGAACCCTCGAGAATGGGCAATGTGCAGGACAA
CAGTCGCTGCATGGGCCAGTGGCTCGTCTCCACGTACAAGGTGGTGCGTT
TCGACATCCTCAACCAGCACCCGCTGTTCGATATTCCCGAGTTCGAGGAG
TGGATGCCTCCGGTGCTGTCCAGGATGGGTCGCAGCTTTGAAGCAAGCTT
TCTAGACCAT
BO06233.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-RA | 879 | CG30412-PA | 1..876 | 17..892 | 4380 | 100 | Plus |
CG30412-RC | 888 | CG30412-PC | 1..885 | 17..892 | 4255 | 99 | Plus |
CG30412-RB | 906 | CG30412-PB | 251..903 | 240..892 | 3265 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-RA | 1063 | CG30412-RA | 10..887 | 15..892 | 4390 | 100 | Plus |
CG30412-RC | 1072 | CG30412-RC | 10..896 | 15..892 | 4265 | 99 | Plus |
CG30412-RB | 1160 | CG30412-RB | 332..984 | 240..892 | 3265 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 23318365..23319017 | 892..240 | 3265 | 100 | Minus |
2R | 25286936 | 2R | 23319114..23319339 | 240..15 | 1130 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:57:39 has no hits.
BO06233.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:22 Download gff for
BO06233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 1..879 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:05 Download gff for
BO06233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 8..887 | 12..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:04 Download gff for
BO06233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 12..887 | 17..894 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:22 Download gff for
BO06233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 8..887 | 12..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:45 Download gff for
BO06233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30412-RA | 12..887 | 17..894 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:45 Download gff for
BO06233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 23318363..23319016 | 241..894 | 99 | <- | Minus |
2R | 23319114..23319337 | 17..240 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:04 Download gff for
BO06233.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19206637..19206860 | 17..240 | 100 | | Minus |
arm_2R | 19205886..19206539 | 241..894 | 99 | <- | Minus |
BO06233.pep Sequence
Translation from 16 to 910
> BO06233.pep
MYSVQFEYSGFLNRQNSKQIKLWNDVDTPVADGQVHPLWSCAAAFDSGFQ
ANCDLNGTSPECFGKGCANGANKSRRLTTKLALLRLKLLWDWDFSEQKFI
ENSSQAAAVFTDFVRRRRNRNVERCSTPMGFKQIKHDLLDDPPDWRLKMM
RFEKEHFRRAIPLKVQLLRHYDHRFAFLDVVFVALRRSNDFRSPAELSEM
TELLKEFIDPAQLRVPHPLIFAEVFMRFRRDYSVEPSRMGNVQDNSRCMG
QWLVSTYKVVRFDILNQHPLFDIPEFEEWMPPVLSRMGRSFEASFLDH
BO06233.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30412-PA | 292 | CG30412-PA | 1..292 | 1..292 | 1566 | 100 | Plus |
CG30412-PC | 295 | CG30412-PC | 1..295 | 1..292 | 1552 | 99 | Plus |
CG30412-PB | 301 | CG30412-PB | 85..301 | 76..292 | 1149 | 100 | Plus |
CG3092-PA | 347 | CG3092-PA | 83..258 | 72..242 | 376 | 40.9 | Plus |