Clone BO06233 Report

Search the DGRC for BO06233

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:33
Vector:pDNR-Dual
Associated Gene/TranscriptCG30412-RA
Protein status:BO06233.pep: validated full length
Sequenced Size:910

Clone Sequence Records

BO06233.3prime Sequence

872 bp (832 high quality bases) assembled on 2005-12-03

> BO06233.3prime
ATGGTCTAGAAAGCTTGCTTCAAAGCTGCGACCCATCCTGGACAGCACCG
GAGGCATCCACTCCTCGAACTCGGGAATATCGAACAGCGGGTGCTGGTTG
AGGATGTCGAAACGCACCACCTTGTACGTGGAGACGAGCCACTGGCCCAT
GCAGCGACTGTTGTCCTGCACATTGCCCATTCTCGAGGGTTCCACGGAAT
AGTCGCGTCGGAAGCGCATGAACACCTCGGCGAAGATCAGGGGATGGGGC
ACCCTTAACTGAGCGGGATCTATGAACTCCTTTAGCAGCTCCGTCATCTC
ACTAAGTTCCGCCGGCGAGCGAAAGTCATTGGATCTCCGCAGGGCCACGA
AGACCACGTCCAGGAAGGCGAAACGATGGTCGTAGTGCCGCAGCAGCTGC
ACCTTGAGCGGAATGGCCCGCCGGAAGTGCTCCTTCTCGAAGCGCATCAT
TTTGAGCCTCCAGTCGGGCGGATCATCCAACAGATCGTGCTTGATCTGCT
TGAAACCCATAGGCGTACTGCATCGCTCCACATTCCGATTGCGGCGGCGC
CTTACGAAGTCCGTAAAAACGGCGGCTGCCTGGCTCGAATTCTCAATGAA
CTTCTGCTCGGAGAAGTCCCAGTCCCAAAGGAGCTTCAGCCGGAGGAGAG
CCAACTTGGTGGTCAATCGGCGGGACTTATTTGCACCATTGGCACATCCT
TTCCCGAAGCACTCTGGTGATGTCCCGTTGAGGTCGCAGTTCGCCTGGAA
GCCCGAATCAAATGCCGCAGCACATGACCATAGCGGGTGCACTTGTCCAT
CAGCAACCGGTGTATCCACATCATTCCATAGTTTTATTTGTTTTGAATTT
TGTCTATTTAAAAGCCGGAATA

BO06233.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-PA 879 CG30412-RA 32..876 863..19 4200 99.8 Minus
CG30412-PB 906 CG30412-RB 251..903 671..19 3265 100 Minus
CG30412-PB 906 CG30412-RB 1..154 824..671 770 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:53:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-RA 1063 CG30412-RA 33..887 872..19 4235 99.8 Minus
CG30412-RC 1072 CG30412-RC 33..896 872..19 4135 98.7 Minus
CG30412-RB 1160 CG30412-RB 332..984 671..19 3265 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:53:37
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23318365..23319017 19..671 3265 100 Plus
2R 25286936 2R 23319114..23319306 671..863 950 99.5 Plus
Blast to na_te.dros performed on 2015-02-04 19:53:41 has no hits.

BO06233.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:48 Download gff for BO06233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-PA 23..879 18..871 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:23 Download gff for BO06233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-PA 23..879 18..871 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:19 Download gff for BO06233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 34..887 19..871 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:44:34 Download gff for BO06233.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 34..887 19..871 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:44:34 Download gff for BO06233.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 23318365..23319016 19..670 100 <- Plus
2R 23319114..23319315 671..871 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:19 Download gff for BO06233.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19205888..19206539 19..670 100 <- Plus
arm_2R 19206637..19206838 671..871 99   Plus

BO06233.5prime Sequence

870 bp (842 high quality bases) assembled on 2005-12-03

> BO06233.5prime
GAAGTTATCAGTCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTT
TAAATAGACAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACA
CCGGTTGCTGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATT
TGATTCGGGCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGT
GCTTCGGGAAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACC
ACCAAGTTGGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTC
CGAGCAGAAGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGG
ACTTCGTAAGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCT
ATGGGTTTCAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTG
GAGGCTCAAAATGATGCGCTTCGAGAAGGAGCACTTCCGGCGGGCCATTC
CGCTCAAGGTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTG
GACGTGGTCTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGC
GGAACTTAGTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTC
AGTTAAGGGTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTC
CGACGCGACTATTCCGTGGAACCCTCGAGAATGGGCAATGTGCAGGACAA
CAGTCGCTGCATGGGCCAGTGGCTCGTCTCCACGTACAAGGTGGTGCGTT
TCGACATCCTCAACCAGCACCCGCTGTTCGATATTCCCGAGTTCGAGGAG
TGGATGCCTCCGGTGCTGTC

BO06233.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-PA 879 CG30412-RA 1..854 17..870 4270 100 Plus
CG30412-PB 906 CG30412-RB 251..881 240..870 3155 100 Plus
CG30412-PB 906 CG30412-RB 1..154 87..240 770 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-RA 1063 CG30412-RA 10..865 15..870 4280 100 Plus
CG30412-RC 1072 CG30412-RC 10..874 15..870 4180 99 Plus
CG30412-RB 1160 CG30412-RB 332..962 240..870 3155 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:00:59
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23318387..23319017 870..240 3155 100 Minus
2R 25286936 2R 23319114..23319339 240..15 1130 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:01:03 has no hits.

BO06233.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:49 Download gff for BO06233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-PA 1..854 17..870 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:25 Download gff for BO06233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-PA 1..854 17..870 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:29 Download gff for BO06233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 8..865 12..870 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:06:03 Download gff for BO06233.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 8..865 12..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:06:03 Download gff for BO06233.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 23319114..23319341 12..240 99   Minus
2R 23318387..23319016 241..870 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:29 Download gff for BO06233.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19205910..19206539 241..870 100 <- Minus
arm_2R 19206637..19206864 12..240 99   Minus

BO06233.complete Sequence

910 bp (910 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630308

> BO06233.complete
GAAGTTATCAGTCGACATGTATTCCGTTCAATTTGAATATTCCGGCTTTT
TAAATAGACAAAATTCAAAACAAATTAAACTATGGAATGATGTGGATACA
CCGGTTGCTGATGGACAAGTGCACCCGCTATGGTCATGTGCTGCGGCATT
TGATTCGGGCTTCCAGGCGAACTGCGACCTCAACGGGACATCACCAGAGT
GCTTCGGGAAAGGATGTGCCAATGGTGCAAATAAGTCCCGCCGATTGACC
ACCAAGTTGGCTCTCCTCCGGCTGAAGCTCCTTTGGGACTGGGACTTCTC
CGAGCAGAAGTTCATTGAGAATTCGAGCCAGGCAGCCGCCGTTTTTACGG
ACTTCGTAAGGCGCCGCCGCAATCGGAATGTGGAGCGATGCAGTACGCCT
ATGGGTTTCAAGCAGATCAAGCACGATCTGTTGGATGATCCGCCCGACTG
GAGGCTCAAAATGATGCGCTTCGAGAAGGAGCACTTCCGGCGGGCCATTC
CGCTCAAGGTGCAGCTGCTGCGGCACTACGACCATCGTTTCGCCTTCCTG
GACGTGGTCTTCGTGGCCCTGCGGAGATCCAATGACTTTCGCTCGCCGGC
GGAACTTAGTGAGATGACGGAGCTGCTAAAGGAGTTCATAGATCCCGCTC
AGTTAAGGGTGCCCCATCCCCTGATCTTCGCCGAGGTGTTCATGCGCTTC
CGACGCGACTATTCCGTGGAACCCTCGAGAATGGGCAATGTGCAGGACAA
CAGTCGCTGCATGGGCCAGTGGCTCGTCTCCACGTACAAGGTGGTGCGTT
TCGACATCCTCAACCAGCACCCGCTGTTCGATATTCCCGAGTTCGAGGAG
TGGATGCCTCCGGTGCTGTCCAGGATGGGTCGCAGCTTTGAAGCAAGCTT
TCTAGACCAT

BO06233.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:57:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-RA 879 CG30412-PA 1..876 17..892 4380 100 Plus
CG30412-RC 888 CG30412-PC 1..885 17..892 4255 99 Plus
CG30412-RB 906 CG30412-PB 251..903 240..892 3265 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:57:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-RA 1063 CG30412-RA 10..887 15..892 4390 100 Plus
CG30412-RC 1072 CG30412-RC 10..896 15..892 4265 99 Plus
CG30412-RB 1160 CG30412-RB 332..984 240..892 3265 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:57:38
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 23318365..23319017 892..240 3265 100 Minus
2R 25286936 2R 23319114..23319339 240..15 1130 100 Minus
Blast to na_te.dros performed on 2014-11-27 00:57:39 has no hits.

BO06233.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:22 Download gff for BO06233.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 1..879 17..893 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:50:05 Download gff for BO06233.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 8..887 12..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:40:04 Download gff for BO06233.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 12..887 17..894 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:22 Download gff for BO06233.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 8..887 12..892 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:45 Download gff for BO06233.complete
Subject Subject Range Query Range Percent Splice Strand
CG30412-RA 12..887 17..894 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:45 Download gff for BO06233.complete
Subject Subject Range Query Range Percent Splice Strand
2R 23318363..23319016 241..894 99 <- Minus
2R 23319114..23319337 17..240 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:40:04 Download gff for BO06233.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 19206637..19206860 17..240 100   Minus
arm_2R 19205886..19206539 241..894 99 <- Minus

BO06233.pep Sequence

Translation from 16 to 910

> BO06233.pep
MYSVQFEYSGFLNRQNSKQIKLWNDVDTPVADGQVHPLWSCAAAFDSGFQ
ANCDLNGTSPECFGKGCANGANKSRRLTTKLALLRLKLLWDWDFSEQKFI
ENSSQAAAVFTDFVRRRRNRNVERCSTPMGFKQIKHDLLDDPPDWRLKMM
RFEKEHFRRAIPLKVQLLRHYDHRFAFLDVVFVALRRSNDFRSPAELSEM
TELLKEFIDPAQLRVPHPLIFAEVFMRFRRDYSVEPSRMGNVQDNSRCMG
QWLVSTYKVVRFDILNQHPLFDIPEFEEWMPPVLSRMGRSFEASFLDH

BO06233.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG30412-PA 292 CG30412-PA 1..292 1..292 1566 100 Plus
CG30412-PC 295 CG30412-PC 1..295 1..292 1552 99 Plus
CG30412-PB 301 CG30412-PB 85..301 76..292 1149 100 Plus
CG3092-PA 347 CG3092-PA 83..258 72..242 376 40.9 Plus