Clone Sequence Records
BO06239.3prime Sequence
776 bp (775 high quality bases) assembled on 2005-12-03
> BO06239.3prime
ATGGTCTAGAAAGCTTGCATCGACCTTCCGCATCTGCTGCAGGATGATGT
CCTCCACCTGGACGCCATCGGGAGTGTTCAGCGCATACAACACGGCCTTG
GCCACATCCCTTGCCTGCAGTTTGGGCAGCTCGGCTACCGCCTGCGAGTA
AACACTAAGGAAATCCGTGTCTACCATGCCCGGGCAAATGCTCGTTAATT
TAATATTTAATTTGAGAAAATGTATTTCCTGGCGCACCGTTTGGCAGAGG
GCCGTAATTGCATGCTTCGTGGCCGGATAAACGCTGAATAAGGGCACCGG
CACTTCCGGAATCCGATGGCCAAGCACGCTGTTCATGACCACAATGTGAC
CGCGAACCTTGACCGCAGCCATGTGTTTCAGTGCCTCCCGCAGGCAGCTG
GCGGTGGCCACCACATTCGTGTCGAACAGTTCCTTGATGTCCTTGGTGGG
GGATTCGCTCAGGAAGTTGGCCTTCAGGATGCCAGCGTTGCAGATGAGCA
CATGAATGGCCTGGAATTTTTCACGAATCCAGTTAAAAGCACTGGCCAAC
TGCTCTTCATCATTGAGGTCACATTGCCGGGCAAAAATCTTTCCAACGCC
GGTCACTTGATCCCTGAGTGCCTCAATGAGTTCCACTCGACGAGCTAGGC
CCACAACTACCATTCCGGCATTGGCCAGTTCTATAGCTGTGGTAGCTCCA
ATGCCCACGGAGGCTCCAGTGACAACCGCCACCTTGTTGCGCCAGTAGAA
ATTATTTTCCATGTCGACTGATAACT
BO06239.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7077-PA | 747 | CG7077-RA | 1..744 | 762..19 | 3720 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdhB-RB | 1103 | CG7077-RB | 217..961 | 763..19 | 3725 | 100 | Minus |
rdhB-RA | 971 | CG7077-RA | 85..829 | 763..19 | 3725 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22355948..22356122 | 193..19 | 875 | 100 | Minus |
3R | 32079331 | 3R | 22352529..22352696 | 623..456 | 840 | 100 | Minus |
3R | 32079331 | 3R | 22352329..22352471 | 763..621 | 715 | 100 | Minus |
3R | 32079331 | 3R | 22355687..22355827 | 333..193 | 705 | 100 | Minus |
3R | 32079331 | 3R | 22352748..22352875 | 456..329 | 640 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:55:02 has no hits.
BO06239.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:56 Download gff for
BO06239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-PA | 1..747 | 16..762 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:34 Download gff for
BO06239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-PA | 1..747 | 16..762 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:57 Download gff for
BO06239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 76..836 | 10..772 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:36:27 Download gff for
BO06239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 76..836 | 10..772 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:36:27 Download gff for
BO06239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22352749..22352875 | 329..455 | 100 | -> | Minus |
3R | 22355692..22355827 | 193..328 | 100 | -> | Minus |
3R | 22355949..22356129 | 10..192 | 97 | | Minus |
3R | 22352320..22352470 | 622..772 | 97 | -> | Minus |
3R | 22352531..22352696 | 456..621 | 100 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:57 Download gff for
BO06239.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18178042..18178192 | 622..772 | 97 | -> | Minus |
arm_3R | 18178253..18178418 | 456..621 | 100 | -> | Minus |
arm_3R | 18178471..18178597 | 329..455 | 100 | -> | Minus |
arm_3R | 18181414..18181549 | 193..328 | 100 | -> | Minus |
arm_3R | 18181671..18181851 | 10..192 | 97 | | Minus |
BO06239.5prime Sequence
776 bp (775 high quality bases) assembled on 2005-12-03
> BO06239.5prime
GAAGTTATCAGTCGACATGGAAAATAATTTCTACTGGCGCAACAAGGTGG
CGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTATAGAA
CTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTGGAACT
CATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTTTGCCC
GGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTAACTGG
ATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCTGGCAT
CCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAAGGAAC
TGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGGCACTG
AAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATGAACAG
CGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAGCGTTT
ATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGCGCCAG
GAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGCCCGGG
CATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGCCGAGC
TGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATGCGCTG
AACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAGATGCG
GAAGGTCGATGCAAGCTTTCTAGACC
BO06239.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7077-PA | 747 | CG7077-RA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdhB-RB | 1103 | CG7077-RB | 217..961 | 16..760 | 3725 | 100 | Plus |
rdhB-RA | 971 | CG7077-RA | 85..829 | 16..760 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22355948..22356122 | 586..760 | 875 | 100 | Plus |
3R | 32079331 | 3R | 22352529..22352696 | 156..323 | 840 | 100 | Plus |
3R | 32079331 | 3R | 22352329..22352471 | 16..158 | 715 | 100 | Plus |
3R | 32079331 | 3R | 22355687..22355827 | 446..586 | 705 | 100 | Plus |
3R | 32079331 | 3R | 22352748..22352875 | 323..450 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 06:06:24 has no hits.
BO06239.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:58 Download gff for
BO06239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-PA | 1..747 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:36 Download gff for
BO06239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-PA | 1..747 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:18 Download gff for
BO06239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 76..836 | 7..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:00 Download gff for
BO06239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 76..836 | 7..769 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:00 Download gff for
BO06239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22352320..22352470 | 7..157 | 97 | -> | Plus |
3R | 22352531..22352696 | 158..323 | 100 | -> | Plus |
3R | 22352749..22352875 | 324..450 | 100 | -> | Plus |
3R | 22355692..22355827 | 451..586 | 100 | -> | Plus |
3R | 22355949..22356129 | 587..769 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:18 Download gff for
BO06239.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18178042..18178192 | 7..157 | 97 | -> | Plus |
arm_3R | 18178253..18178418 | 158..323 | 100 | -> | Plus |
arm_3R | 18178471..18178597 | 324..450 | 100 | -> | Plus |
arm_3R | 18181414..18181549 | 451..586 | 100 | -> | Plus |
arm_3R | 18181671..18181851 | 587..769 | 97 | | Plus |
BO06239.complete Sequence
778 bp (778 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630309
> BO06239.complete
GAAGTTATCAGTCGACATGGAAAATAATTTCTACTGGCGCAACAAGGTGG
CGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTATAGAA
CTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTGGAACT
CATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTTTGCCC
GGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTAACTGG
ATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCTGGCAT
CCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAAGGAAC
TGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGGCACTG
AAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATGAACAG
CGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAGCGTTT
ATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGCGCCAG
GAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGCCCGGG
CATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGCCGAGC
TGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATGCGCTG
AACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAGATGCG
GAAGGTCGATGCAAGCTTTCTAGACCAT
BO06239.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdhB-RB | 747 | CG7077-PB | 1..744 | 17..760 | 3720 | 100 | Plus |
rdhB-RA | 747 | CG7077-PA | 1..744 | 17..760 | 3720 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdhB-RB | 1103 | CG7077-RB | 217..961 | 16..760 | 3725 | 100 | Plus |
rdhB-RA | 971 | CG7077-RA | 85..829 | 16..760 | 3725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22355948..22356122 | 586..760 | 875 | 100 | Plus |
3R | 32079331 | 3R | 22352529..22352696 | 156..323 | 840 | 100 | Plus |
3R | 32079331 | 3R | 22352329..22352471 | 16..158 | 715 | 100 | Plus |
3R | 32079331 | 3R | 22355687..22355827 | 446..586 | 705 | 100 | Plus |
3R | 32079331 | 3R | 22352748..22352875 | 323..450 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:24:11 has no hits.
BO06239.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:50 Download gff for
BO06239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-RA | 1..747 | 17..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:07 Download gff for
BO06239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-RA | 78..838 | 7..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:54 Download gff for
BO06239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 86..829 | 17..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:50 Download gff for
BO06239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7077-RA | 78..838 | 7..769 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:13 Download gff for
BO06239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rdhB-RA | 86..829 | 17..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:13 Download gff for
BO06239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22352330..22352470 | 17..157 | 100 | -> | Plus |
3R | 22352531..22352696 | 158..323 | 100 | -> | Plus |
3R | 22352749..22352875 | 324..450 | 100 | -> | Plus |
3R | 22355692..22355827 | 451..586 | 100 | -> | Plus |
3R | 22355949..22356122 | 587..762 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:54 Download gff for
BO06239.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18178052..18178192 | 17..157 | 100 | -> | Plus |
arm_3R | 18178253..18178418 | 158..323 | 100 | -> | Plus |
arm_3R | 18178471..18178597 | 324..450 | 100 | -> | Plus |
arm_3R | 18181414..18181549 | 451..586 | 100 | -> | Plus |
arm_3R | 18181671..18181844 | 587..762 | 98 | | Plus |
BO06239.pep Sequence
Translation from 16 to 778
> BO06239.pep
MENNFYWRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALR
DQVTGVGKIFARQCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKANF
LSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRGHIVVMNSVLGHR
IPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGMVDTD
FLSVYSQAVAELPKLQARDVAKAVLYALNTPDGVQVEDIILQQMRKVDAS
FLDH
BO06239.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rdhB-PB | 248 | CG7077-PB | 1..248 | 1..248 | 1249 | 100 | Plus |
rdhB-PA | 248 | CG7077-PA | 1..248 | 1..248 | 1249 | 100 | Plus |
antdh-PA | 250 | CG1386-PA | 4..246 | 7..244 | 469 | 40.7 | Plus |
CG9150-PB | 251 | CG9150-PB | 4..247 | 7..244 | 455 | 40.6 | Plus |
CG8757-PB | 252 | CG8757-PB | 4..246 | 7..242 | 439 | 39.1 | Plus |