Clone BO06239 Report

Search the DGRC for BO06239

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:39
Vector:pDNR-Dual
Associated Gene/TranscriptCG7077-RA
Protein status:BO06239.pep: validated full length
Sequenced Size:778

Clone Sequence Records

BO06239.3prime Sequence

776 bp (775 high quality bases) assembled on 2005-12-03

> BO06239.3prime
ATGGTCTAGAAAGCTTGCATCGACCTTCCGCATCTGCTGCAGGATGATGT
CCTCCACCTGGACGCCATCGGGAGTGTTCAGCGCATACAACACGGCCTTG
GCCACATCCCTTGCCTGCAGTTTGGGCAGCTCGGCTACCGCCTGCGAGTA
AACACTAAGGAAATCCGTGTCTACCATGCCCGGGCAAATGCTCGTTAATT
TAATATTTAATTTGAGAAAATGTATTTCCTGGCGCACCGTTTGGCAGAGG
GCCGTAATTGCATGCTTCGTGGCCGGATAAACGCTGAATAAGGGCACCGG
CACTTCCGGAATCCGATGGCCAAGCACGCTGTTCATGACCACAATGTGAC
CGCGAACCTTGACCGCAGCCATGTGTTTCAGTGCCTCCCGCAGGCAGCTG
GCGGTGGCCACCACATTCGTGTCGAACAGTTCCTTGATGTCCTTGGTGGG
GGATTCGCTCAGGAAGTTGGCCTTCAGGATGCCAGCGTTGCAGATGAGCA
CATGAATGGCCTGGAATTTTTCACGAATCCAGTTAAAAGCACTGGCCAAC
TGCTCTTCATCATTGAGGTCACATTGCCGGGCAAAAATCTTTCCAACGCC
GGTCACTTGATCCCTGAGTGCCTCAATGAGTTCCACTCGACGAGCTAGGC
CCACAACTACCATTCCGGCATTGGCCAGTTCTATAGCTGTGGTAGCTCCA
ATGCCCACGGAGGCTCCAGTGACAACCGCCACCTTGTTGCGCCAGTAGAA
ATTATTTTCCATGTCGACTGATAACT

BO06239.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7077-PA 747 CG7077-RA 1..744 762..19 3720 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:04
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-RB 1103 CG7077-RB 217..961 763..19 3725 100 Minus
rdhB-RA 971 CG7077-RA 85..829 763..19 3725 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22355948..22356122 193..19 875 100 Minus
3R 32079331 3R 22352529..22352696 623..456 840 100 Minus
3R 32079331 3R 22352329..22352471 763..621 715 100 Minus
3R 32079331 3R 22355687..22355827 333..193 705 100 Minus
3R 32079331 3R 22352748..22352875 456..329 640 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:55:02 has no hits.

BO06239.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:56 Download gff for BO06239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7077-PA 1..747 16..762 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:34 Download gff for BO06239.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7077-PA 1..747 16..762 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:06:57 Download gff for BO06239.3prime
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 76..836 10..772 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:36:27 Download gff for BO06239.3prime
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 76..836 10..772 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:36:27 Download gff for BO06239.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22352749..22352875 329..455 100 -> Minus
3R 22355692..22355827 193..328 100 -> Minus
3R 22355949..22356129 10..192 97   Minus
3R 22352320..22352470 622..772 97 -> Minus
3R 22352531..22352696 456..621 100 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:06:57 Download gff for BO06239.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18178042..18178192 622..772 97 -> Minus
arm_3R 18178253..18178418 456..621 100 -> Minus
arm_3R 18178471..18178597 329..455 100 -> Minus
arm_3R 18181414..18181549 193..328 100 -> Minus
arm_3R 18181671..18181851 10..192 97   Minus

BO06239.5prime Sequence

776 bp (775 high quality bases) assembled on 2005-12-03

> BO06239.5prime
GAAGTTATCAGTCGACATGGAAAATAATTTCTACTGGCGCAACAAGGTGG
CGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTATAGAA
CTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTGGAACT
CATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTTTGCCC
GGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTAACTGG
ATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCTGGCAT
CCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAAGGAAC
TGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGGCACTG
AAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATGAACAG
CGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAGCGTTT
ATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGCGCCAG
GAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGCCCGGG
CATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGCCGAGC
TGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATGCGCTG
AACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAGATGCG
GAAGGTCGATGCAAGCTTTCTAGACC

BO06239.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG7077-PA 747 CG7077-RA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-RB 1103 CG7077-RB 217..961 16..760 3725 100 Plus
rdhB-RA 971 CG7077-RA 85..829 16..760 3725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:23
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22355948..22356122 586..760 875 100 Plus
3R 32079331 3R 22352529..22352696 156..323 840 100 Plus
3R 32079331 3R 22352329..22352471 16..158 715 100 Plus
3R 32079331 3R 22355687..22355827 446..586 705 100 Plus
3R 32079331 3R 22352748..22352875 323..450 640 100 Plus
Blast to na_te.dros performed on 2015-02-13 06:06:24 has no hits.

BO06239.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:43:58 Download gff for BO06239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7077-PA 1..747 17..763 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:36 Download gff for BO06239.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7077-PA 1..747 17..763 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:18 Download gff for BO06239.5prime
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 76..836 7..769 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:04:00 Download gff for BO06239.5prime
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 76..836 7..769 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:04:00 Download gff for BO06239.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22352320..22352470 7..157 97 -> Plus
3R 22352531..22352696 158..323 100 -> Plus
3R 22352749..22352875 324..450 100 -> Plus
3R 22355692..22355827 451..586 100 -> Plus
3R 22355949..22356129 587..769 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:18 Download gff for BO06239.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18178042..18178192 7..157 97 -> Plus
arm_3R 18178253..18178418 158..323 100 -> Plus
arm_3R 18178471..18178597 324..450 100 -> Plus
arm_3R 18181414..18181549 451..586 100 -> Plus
arm_3R 18181671..18181851 587..769 97   Plus

BO06239.complete Sequence

778 bp (778 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630309

> BO06239.complete
GAAGTTATCAGTCGACATGGAAAATAATTTCTACTGGCGCAACAAGGTGG
CGGTTGTCACTGGAGCCTCCGTGGGCATTGGAGCTACCACAGCTATAGAA
CTGGCCAATGCCGGAATGGTAGTTGTGGGCCTAGCTCGTCGAGTGGAACT
CATTGAGGCACTCAGGGATCAAGTGACCGGCGTTGGAAAGATTTTTGCCC
GGCAATGTGACCTCAATGATGAAGAGCAGTTGGCCAGTGCTTTTAACTGG
ATTCGTGAAAAATTCCAGGCCATTCATGTGCTCATCTGCAACGCTGGCAT
CCTGAAGGCCAACTTCCTGAGCGAATCCCCCACCAAGGACATCAAGGAAC
TGTTCGACACGAATGTGGTGGCCACCGCCAGCTGCCTGCGGGAGGCACTG
AAACACATGGCTGCGGTCAAGGTTCGCGGTCACATTGTGGTCATGAACAG
CGTGCTTGGCCATCGGATTCCGGAAGTGCCGGTGCCCTTATTCAGCGTTT
ATCCGGCCACGAAGCATGCAATTACGGCCCTCTGCCAAACGGTGCGCCAG
GAAATACATTTTCTCAAATTAAATATTAAATTAACGAGCATTTGCCCGGG
CATGGTAGACACGGATTTCCTTAGTGTTTACTCGCAGGCGGTAGCCGAGC
TGCCCAAACTGCAGGCAAGGGATGTGGCCAAGGCCGTGTTGTATGCGCTG
AACACTCCCGATGGCGTCCAGGTGGAGGACATCATCCTGCAGCAGATGCG
GAAGGTCGATGCAAGCTTTCTAGACCAT

BO06239.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:24:12
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-RB 747 CG7077-PB 1..744 17..760 3720 100 Plus
rdhB-RA 747 CG7077-PA 1..744 17..760 3720 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:13
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-RB 1103 CG7077-RB 217..961 16..760 3725 100 Plus
rdhB-RA 971 CG7077-RA 85..829 16..760 3725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:10
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22355948..22356122 586..760 875 100 Plus
3R 32079331 3R 22352529..22352696 156..323 840 100 Plus
3R 32079331 3R 22352329..22352471 16..158 715 100 Plus
3R 32079331 3R 22355687..22355827 446..586 705 100 Plus
3R 32079331 3R 22352748..22352875 323..450 640 100 Plus
Blast to na_te.dros performed on 2014-11-28 01:24:11 has no hits.

BO06239.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 21:46:50 Download gff for BO06239.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 1..747 17..763 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:01:07 Download gff for BO06239.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 78..838 7..769 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:48:54 Download gff for BO06239.complete
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 86..829 17..762 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 21:46:50 Download gff for BO06239.complete
Subject Subject Range Query Range Percent Splice Strand
CG7077-RA 78..838 7..769 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:53:13 Download gff for BO06239.complete
Subject Subject Range Query Range Percent Splice Strand
rdhB-RA 86..829 17..762 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:53:13 Download gff for BO06239.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22352330..22352470 17..157 100 -> Plus
3R 22352531..22352696 158..323 100 -> Plus
3R 22352749..22352875 324..450 100 -> Plus
3R 22355692..22355827 451..586 100 -> Plus
3R 22355949..22356122 587..762 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:48:54 Download gff for BO06239.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 18178052..18178192 17..157 100 -> Plus
arm_3R 18178253..18178418 158..323 100 -> Plus
arm_3R 18178471..18178597 324..450 100 -> Plus
arm_3R 18181414..18181549 451..586 100 -> Plus
arm_3R 18181671..18181844 587..762 98   Plus

BO06239.pep Sequence

Translation from 16 to 778

> BO06239.pep
MENNFYWRNKVAVVTGASVGIGATTAIELANAGMVVVGLARRVELIEALR
DQVTGVGKIFARQCDLNDEEQLASAFNWIREKFQAIHVLICNAGILKANF
LSESPTKDIKELFDTNVVATASCLREALKHMAAVKVRGHIVVMNSVLGHR
IPEVPVPLFSVYPATKHAITALCQTVRQEIHFLKLNIKLTSICPGMVDTD
FLSVYSQAVAELPKLQARDVAKAVLYALNTPDGVQVEDIILQQMRKVDAS
FLDH

BO06239.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:50:47
Subject Length Description Subject Range Query Range Score Percent Strand
rdhB-PB 248 CG7077-PB 1..248 1..248 1249 100 Plus
rdhB-PA 248 CG7077-PA 1..248 1..248 1249 100 Plus
antdh-PA 250 CG1386-PA 4..246 7..244 469 40.7 Plus
CG9150-PB 251 CG9150-PB 4..247 7..244 455 40.6 Plus
CG8757-PB 252 CG8757-PB 4..246 7..242 439 39.1 Plus