Clone Sequence Records
BO06242.3prime Sequence
701 bp (700 high quality bases) assembled on 2005-12-03
> BO06242.3prime
ATGGTCTAGAAAGCTTGCTTCGGCATAGGTGGCCTCGTTGGCCTCTTTGG
AGCTAACCTCCATGACCTCGCATCCCTGGGCGTAGTCTTCGATGCTGGTG
TTGTCCTTGTCCTTCAAAAGCTCCGCCACAGCCTGCGCCATCTGCTCGTC
CAGTTCCTTCTCAGCCTGGGCATCCAGGTCCGGCGCATCGCTGGATTTCT
GATCGGCAGCCTGGCGTCTTCGTCTAGACTCCCTTTGCTTACAAAAGCTT
ACGGCCCGGTCATATGCAGATTGTAGATTGAAATTCTTAATATCGAATTC
TTTCAGTGACTGGCAAAAGGATCGCACCATCGTATCCTCCGTGCTTCTGC
GTTTCCTAGCAGTGTGCTCCGTAGTTGTTTCTTCTACCGCAGCTGGTGTT
GTCTTTTCCTCGGAGGAGGAATCGCCGGAGCTGTCCGCCTTGTTCTTGGC
CTTGTCTTTGGCTTTGTCATTATGCTCCTCAGATGAGCTGCTGGCATCCT
TGGCAGATCGTTTGATAATATGGATTCCGGTGCTCTCGTCCAGGTCCTGC
AGTTCACCGCTGTCTTCGCTCAGCGTCAGCATCTGCTCCAGCCAATCCTC
CTCGGATTTGGTTAGTCTTGAGGGCAGAGCCACTGCAGCACAGAAAAGGA
TGGCTGACACGGCCAGTAGTAACAGTGATCGCTGCATGTCGACTGATAAC
T
BO06242.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-PA | 672 | CG4716-RA | 1..669 | 687..19 | 3345 | 100 | Minus |
CG4716-PB | 369 | CG4716-RB | 1..360 | 687..328 | 1800 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-RC | 860 | CG4716-RC | 97..765 | 687..19 | 3345 | 100 | Minus |
CG4716-RA | 792 | CG4716-RA | 97..765 | 687..19 | 3345 | 100 | Minus |
CG4716-RB | 633 | CG4716-RB | 97..456 | 687..328 | 1800 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13256683..13257351 | 687..19 | 3345 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:59:16 has no hits.
BO06242.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:03 Download gff for
BO06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-PA | 1..672 | 16..687 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:43 Download gff for
BO06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-PA | 1..672 | 16..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:14 Download gff for
BO06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 98..769 | 19..692 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:37:23 Download gff for
BO06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 94..765 | 19..692 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:37:23 Download gff for
BO06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13256680..13257351 | 19..692 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:14 Download gff for
BO06242.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9144185..9144856 | 19..692 | 99 | | Minus |
BO06242.5prime Sequence
701 bp (700 high quality bases) assembled on 2005-12-03
> BO06242.5prime
GAAGTTATCAGTCGACATGCAGCGATCACTGTTACTACTGGCCGTGTCAG
CCATCCTTTTCTGTGCTGCAGTGGCTCTGCCCTCAAGACTAACCAAATCC
GAGGAGGATTGGCTGGAGCAGATGCTGACGCTGAGCGAAGACAGCGGTGA
ACTGCAGGACCTGGACGAGAGCACCGGAATCCATATTATCAAACGATCTG
CCAAGGATGCCAGCAGCTCATCTGAGGAGCATAATGACAAAGCCAAAGAC
AAGGCCAAGAACAAGGCGGACAGCTCCGGCGATTCCTCCTCCGAGGAAAA
GACAACACCAGCTGCGGTAGAAGAAACAACTACGGAGCACACTGCTAGGA
AACGCAGAAGCACGGAGGATACGATGGTGCGATCCTTTTGCCAGTCACTG
AAAGAATTCGATATTAAGAATTTCAATCTACAATCTGCATATGACCGGGC
CGTAAGCTTTTGTAAGCAAAGGGAGTCTAGACGAAGACGCCAGGCTGCCG
ATCAGAAATCCAGCGATGCGCCGGACCTGGATGCCCAGGCTGAGAAGGAA
CTGGACGAGCAGATGGCGCAGGCTGTGGCGGAGCTTTTGAAGGACAAGGA
CAACACCAGCATCGAAGACTACGCCCAGGGATGCGAGGTCATGGAGGTTA
GCTCCAAAGAGGCCAACGAGGCCACCTATGCCGAAGCAAGCTTTCTAGAC
C
BO06242.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-PA | 672 | CG4716-RA | 1..669 | 17..685 | 3345 | 100 | Plus |
CG4716-PB | 369 | CG4716-RB | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-RC | 860 | CG4716-RC | 97..765 | 17..685 | 3345 | 100 | Plus |
CG4716-RA | 792 | CG4716-RA | 97..765 | 17..685 | 3345 | 100 | Plus |
CG4716-RB | 633 | CG4716-RB | 97..456 | 17..376 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13256683..13257351 | 17..685 | 3345 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:02:36 has no hits.
BO06242.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:04 Download gff for
BO06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-PA | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:44 Download gff for
BO06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-PA | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:07 Download gff for
BO06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 98..769 | 12..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:21 Download gff for
BO06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 94..765 | 12..685 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:21 Download gff for
BO06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13256680..13257351 | 12..685 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:07 Download gff for
BO06242.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9144185..9144856 | 12..685 | 99 | | Plus |
BO06242.complete Sequence
703 bp (703 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630310
> BO06242.complete
GAAGTTATCAGTCGACATGCAGCGATCACTGTTACTACTGGCCGTGTCAG
CCATCCTTTTCTGTGCTGCAGTGGCTCTGCCCTCAAGACTAACCAAATCC
GAGGAGGATTGGCTGGAGCAGATGCTGACGCTGAGCGAAGACAGCGGTGA
ACTGCAGGACCTGGACGAGAGCACCGGAATCCATATTATCAAACGATCTG
CCAAGGATGCCAGCAGCTCATCTGAGGAGCATAATGACAAAGCCAAAGAC
AAGGCCAAGAACAAGGCGGACAGCTCCGGCGATTCCTCCTCCGAGGAAAA
GACAACACCAGCTGCGGTAGAAGAAACAACTACGGAGCACACTGCTAGGA
AACGCAGAAGCACGGAGGATACGATGGTGCGATCCTTTTGCCAGTCACTG
AAAGAATTCGATATTAAGAATTTCAATCTACAATCTGCATATGACCGGGC
CGTAAGCTTTTGTAAGCAAAGGGAGTCTAGACGAAGACGCCAGGCTGCCG
ATCAGAAATCCAGCGATGCGCCGGACCTGGATGCCCAGGCTGAGAAGGAA
CTGGACGAGCAGATGGCGCAGGCTGTGGCGGAGCTTTTGAAGGACAAGGA
CAACACCAGCATCGAAGACTACGCCCAGGGATGCGAGGTCATGGAGGTTA
GCTCCAAAGAGGCCAACGAGGCCACCTATGCCGAAGCAAGCTTTCTAGAC
CAT
BO06242.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-RC | 672 | CG4716-PC | 1..669 | 17..685 | 3345 | 100 | Plus |
CG4716-RA | 672 | CG4716-PA | 1..669 | 17..685 | 3345 | 100 | Plus |
CG4716-RB | 369 | CG4716-PB | 1..360 | 17..376 | 1800 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-RC | 860 | CG4716-RC | 97..765 | 17..685 | 3345 | 100 | Plus |
CG4716-RA | 792 | CG4716-RA | 97..765 | 17..685 | 3345 | 100 | Plus |
CG4716-RB | 633 | CG4716-RB | 97..456 | 17..376 | 1800 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 13256683..13257351 | 17..685 | 3345 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:08:03 has no hits.
BO06242.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:14 Download gff for
BO06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 1..672 | 17..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:22 Download gff for
BO06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 98..769 | 12..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:25 Download gff for
BO06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 101..769 | 17..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:14 Download gff for
BO06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 98..769 | 12..685 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:51 Download gff for
BO06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4716-RA | 97..765 | 17..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:51 Download gff for
BO06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 13256683..13257351 | 17..687 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:25 Download gff for
BO06242.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 9144188..9144856 | 17..687 | 99 | | Plus |
BO06242.pep Sequence
Translation from 16 to 703
> BO06242.pep
MQRSLLLLAVSAILFCAAVALPSRLTKSEEDWLEQMLTLSEDSGELQDLD
ESTGIHIIKRSAKDASSSSEEHNDKAKDKAKNKADSSGDSSSEEKTTPAA
VEETTTEHTARKRRSTEDTMVRSFCQSLKEFDIKNFNLQSAYDRAVSFCK
QRESRRRRQAADQKSSDAPDLDAQAEKELDEQMAQAVAELLKDKDNTSIE
DYAQGCEVMEVSSKEANEATYAEASFLDH
BO06242.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4716-PC | 223 | CG4716-PC | 1..223 | 1..223 | 1106 | 100 | Plus |
CG4716-PA | 223 | CG4716-PA | 1..223 | 1..223 | 1106 | 100 | Plus |
CG4716-PB | 122 | CG4716-PB | 1..121 | 1..121 | 590 | 99.2 | Plus |