Clone BO06242 Report

Search the DGRC for BO06242

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:42
Vector:pDNR-Dual
Associated Gene/TranscriptCG4716-RA
Protein status:BO06242.pep: validated full length
Sequenced Size:703

Clone Sequence Records

BO06242.3prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-03

> BO06242.3prime
ATGGTCTAGAAAGCTTGCTTCGGCATAGGTGGCCTCGTTGGCCTCTTTGG
AGCTAACCTCCATGACCTCGCATCCCTGGGCGTAGTCTTCGATGCTGGTG
TTGTCCTTGTCCTTCAAAAGCTCCGCCACAGCCTGCGCCATCTGCTCGTC
CAGTTCCTTCTCAGCCTGGGCATCCAGGTCCGGCGCATCGCTGGATTTCT
GATCGGCAGCCTGGCGTCTTCGTCTAGACTCCCTTTGCTTACAAAAGCTT
ACGGCCCGGTCATATGCAGATTGTAGATTGAAATTCTTAATATCGAATTC
TTTCAGTGACTGGCAAAAGGATCGCACCATCGTATCCTCCGTGCTTCTGC
GTTTCCTAGCAGTGTGCTCCGTAGTTGTTTCTTCTACCGCAGCTGGTGTT
GTCTTTTCCTCGGAGGAGGAATCGCCGGAGCTGTCCGCCTTGTTCTTGGC
CTTGTCTTTGGCTTTGTCATTATGCTCCTCAGATGAGCTGCTGGCATCCT
TGGCAGATCGTTTGATAATATGGATTCCGGTGCTCTCGTCCAGGTCCTGC
AGTTCACCGCTGTCTTCGCTCAGCGTCAGCATCTGCTCCAGCCAATCCTC
CTCGGATTTGGTTAGTCTTGAGGGCAGAGCCACTGCAGCACAGAAAAGGA
TGGCTGACACGGCCAGTAGTAACAGTGATCGCTGCATGTCGACTGATAAC
T

BO06242.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-PA 672 CG4716-RA 1..669 687..19 3345 100 Minus
CG4716-PB 369 CG4716-RB 1..360 687..328 1800 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-RC 860 CG4716-RC 97..765 687..19 3345 100 Minus
CG4716-RA 792 CG4716-RA 97..765 687..19 3345 100 Minus
CG4716-RB 633 CG4716-RB 97..456 687..328 1800 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:15
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13256683..13257351 687..19 3345 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:59:16 has no hits.

BO06242.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:03 Download gff for BO06242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-PA 1..672 16..687 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:43 Download gff for BO06242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-PA 1..672 16..687 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:14 Download gff for BO06242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 98..769 19..692 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:37:23 Download gff for BO06242.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 94..765 19..692 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:37:23 Download gff for BO06242.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 13256680..13257351 19..692 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:14 Download gff for BO06242.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9144185..9144856 19..692 99   Minus

BO06242.5prime Sequence

701 bp (700 high quality bases) assembled on 2005-12-03

> BO06242.5prime
GAAGTTATCAGTCGACATGCAGCGATCACTGTTACTACTGGCCGTGTCAG
CCATCCTTTTCTGTGCTGCAGTGGCTCTGCCCTCAAGACTAACCAAATCC
GAGGAGGATTGGCTGGAGCAGATGCTGACGCTGAGCGAAGACAGCGGTGA
ACTGCAGGACCTGGACGAGAGCACCGGAATCCATATTATCAAACGATCTG
CCAAGGATGCCAGCAGCTCATCTGAGGAGCATAATGACAAAGCCAAAGAC
AAGGCCAAGAACAAGGCGGACAGCTCCGGCGATTCCTCCTCCGAGGAAAA
GACAACACCAGCTGCGGTAGAAGAAACAACTACGGAGCACACTGCTAGGA
AACGCAGAAGCACGGAGGATACGATGGTGCGATCCTTTTGCCAGTCACTG
AAAGAATTCGATATTAAGAATTTCAATCTACAATCTGCATATGACCGGGC
CGTAAGCTTTTGTAAGCAAAGGGAGTCTAGACGAAGACGCCAGGCTGCCG
ATCAGAAATCCAGCGATGCGCCGGACCTGGATGCCCAGGCTGAGAAGGAA
CTGGACGAGCAGATGGCGCAGGCTGTGGCGGAGCTTTTGAAGGACAAGGA
CAACACCAGCATCGAAGACTACGCCCAGGGATGCGAGGTCATGGAGGTTA
GCTCCAAAGAGGCCAACGAGGCCACCTATGCCGAAGCAAGCTTTCTAGAC
C

BO06242.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-PA 672 CG4716-RA 1..669 17..685 3345 100 Plus
CG4716-PB 369 CG4716-RB 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-RC 860 CG4716-RC 97..765 17..685 3345 100 Plus
CG4716-RA 792 CG4716-RA 97..765 17..685 3345 100 Plus
CG4716-RB 633 CG4716-RB 97..456 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:34
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13256683..13257351 17..685 3345 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:02:36 has no hits.

BO06242.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:04 Download gff for BO06242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-PA 1..672 17..688 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:44 Download gff for BO06242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-PA 1..672 17..688 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:07 Download gff for BO06242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 98..769 12..685 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:21 Download gff for BO06242.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 94..765 12..685 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:21 Download gff for BO06242.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 13256680..13257351 12..685 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:07 Download gff for BO06242.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9144185..9144856 12..685 99   Plus

BO06242.complete Sequence

703 bp (703 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630310

> BO06242.complete
GAAGTTATCAGTCGACATGCAGCGATCACTGTTACTACTGGCCGTGTCAG
CCATCCTTTTCTGTGCTGCAGTGGCTCTGCCCTCAAGACTAACCAAATCC
GAGGAGGATTGGCTGGAGCAGATGCTGACGCTGAGCGAAGACAGCGGTGA
ACTGCAGGACCTGGACGAGAGCACCGGAATCCATATTATCAAACGATCTG
CCAAGGATGCCAGCAGCTCATCTGAGGAGCATAATGACAAAGCCAAAGAC
AAGGCCAAGAACAAGGCGGACAGCTCCGGCGATTCCTCCTCCGAGGAAAA
GACAACACCAGCTGCGGTAGAAGAAACAACTACGGAGCACACTGCTAGGA
AACGCAGAAGCACGGAGGATACGATGGTGCGATCCTTTTGCCAGTCACTG
AAAGAATTCGATATTAAGAATTTCAATCTACAATCTGCATATGACCGGGC
CGTAAGCTTTTGTAAGCAAAGGGAGTCTAGACGAAGACGCCAGGCTGCCG
ATCAGAAATCCAGCGATGCGCCGGACCTGGATGCCCAGGCTGAGAAGGAA
CTGGACGAGCAGATGGCGCAGGCTGTGGCGGAGCTTTTGAAGGACAAGGA
CAACACCAGCATCGAAGACTACGCCCAGGGATGCGAGGTCATGGAGGTTA
GCTCCAAAGAGGCCAACGAGGCCACCTATGCCGAAGCAAGCTTTCTAGAC
CAT

BO06242.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:08:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-RC 672 CG4716-PC 1..669 17..685 3345 100 Plus
CG4716-RA 672 CG4716-PA 1..669 17..685 3345 100 Plus
CG4716-RB 369 CG4716-PB 1..360 17..376 1800 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:08:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-RC 860 CG4716-RC 97..765 17..685 3345 100 Plus
CG4716-RA 792 CG4716-RA 97..765 17..685 3345 100 Plus
CG4716-RB 633 CG4716-RB 97..456 17..376 1800 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:08:01
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 13256683..13257351 17..685 3345 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:08:03 has no hits.

BO06242.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:36:14 Download gff for BO06242.complete
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 1..672 17..688 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 04:57:22 Download gff for BO06242.complete
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 98..769 12..685 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:18:25 Download gff for BO06242.complete
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 101..769 17..687 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:36:14 Download gff for BO06242.complete
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 98..769 12..685 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:26:51 Download gff for BO06242.complete
Subject Subject Range Query Range Percent Splice Strand
CG4716-RA 97..765 17..687 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:26:51 Download gff for BO06242.complete
Subject Subject Range Query Range Percent Splice Strand
2R 13256683..13257351 17..687 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:18:25 Download gff for BO06242.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 9144188..9144856 17..687 99   Plus

BO06242.pep Sequence

Translation from 16 to 703

> BO06242.pep
MQRSLLLLAVSAILFCAAVALPSRLTKSEEDWLEQMLTLSEDSGELQDLD
ESTGIHIIKRSAKDASSSSEEHNDKAKDKAKNKADSSGDSSSEEKTTPAA
VEETTTEHTARKRRSTEDTMVRSFCQSLKEFDIKNFNLQSAYDRAVSFCK
QRESRRRRQAADQKSSDAPDLDAQAEKELDEQMAQAVAELLKDKDNTSIE
DYAQGCEVMEVSSKEANEATYAEASFLDH

BO06242.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 21:14:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG4716-PC 223 CG4716-PC 1..223 1..223 1106 100 Plus
CG4716-PA 223 CG4716-PA 1..223 1..223 1106 100 Plus
CG4716-PB 122 CG4716-PB 1..121 1..121 590 99.2 Plus