Clone BO06243 Report

Search the DGRC for BO06243

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:43
Vector:pDNR-Dual
Associated Gene/TranscriptCG4377-RA
Protein status:BO06243.pep: validated full length
Sequenced Size:727

Clone Sequence Records

BO06243.3prime Sequence

725 bp (724 high quality bases) assembled on 2005-12-03

> BO06243.3prime
ATGGTCTAGAAAGCTTGCATTCAGCAATTTAAGCGAGAGCAGGGCAAAGA
AAGCCAACCCGTAGCTCAAGAGTTTTTTACTTTGCTCAGCTGAGGACTTG
GGTCCCAATTCCAAATCGTAGTTGTTGCAGGCCACGGAGTCGCTGGAGTT
TTCCGGCAGGCAGAGCGAGCATTTCGAGTCCTCCAAGCAGGCCTTCTGCT
CCTTAACAGAAAGAGCACATCCTCTCTGGAGGCTGTCCTTCTGATCGCCG
ACTACCTTGACATAACAGTAGGAATTGGCGGAGGTGGGGAGGGCACATTG
GGTGGCGGCCAAGGAGGCGGTGGCACCCTTGTTGCAATCAGCTGAATCAG
AACCAATGCATTGAATGCATTTGAAATCCCTGCGTCCTACATTATTGCAC
AGCTGTCCACTGCACTTTTGACATTGATCGTCCTTGGCCGCACATTTCGC
TTGACCAGCCAAAGAGATTTGAGAAAAGCAACCGCGCTCACTAACAGCAA
AATCCTCATAAATGGTGACGCAAACGTCCAGTCTATCAGAACAGCTAACG
GTGGCGTTTTGACGAGTGGTTCTCGAACAATTTATGCCTTCACAGCTGTA
ACATTTTGGCGATTCAGCTGAATTGCGCACCTCCCTAGAAATTTCTCCTG
AGATTTCCCGTGAAGCCAGGAATAAAGCCAGTAGTATAACAAATTTGCCC
GATTGCAACATGTCGACTGATAACT

BO06243.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-PA 696 CG4377-RA 1..693 711..19 3465 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:06:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-RA 788 CG4377-RA 45..737 711..19 3465 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:06:13
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21835499..21835825 19..345 1635 100 Plus
2R 25286936 2R 21836103..21836313 501..711 1055 100 Plus
2R 25286936 2R 21835890..21836044 346..500 775 100 Plus
Blast to na_te.dros performed on 2015-02-13 12:06:14 has no hits.

BO06243.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:05 Download gff for BO06243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-PA 1..696 15..711 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:45 Download gff for BO06243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-PA 1..696 15..711 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:45 Download gff for BO06243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 45..744 10..711 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:28 Download gff for BO06243.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 45..744 10..711 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:28 Download gff for BO06243.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 21835491..21835825 10..345 98 <- Plus
2R 21835890..21836044 346..500 100 <- Plus
2R 21836103..21836313 501..711 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:45 Download gff for BO06243.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17722996..17723330 10..345 98 <- Plus
arm_2R 17723395..17723549 346..500 100 <- Plus
arm_2R 17723608..17723818 501..711 100   Plus

BO06243.5prime Sequence

725 bp (724 high quality bases) assembled on 2005-12-03

> BO06243.5prime
GAAGTTATCAGTCGACATGTTGCAATCGGGCAAATTTGTTATACTACTGG
CTTTATTCCTGGCTTCACGGGAAATCTCAGGAGAAATTTCTAGGGAGGTG
CGCAATTCAGCTGAATCGCCAAAATGTTACAGCTGTGAAGGCATAAATTG
TTCGAGAACCACTCGTCAAAACGCCACCGTTAGCTGTTCTGATAGACTGG
ACGTTTGCGTCACCATTTATGAGGATTTTGCTGTTAGTGAGCGCGGTTGC
TTTTCTCAAATCTCTTTGGCTGGTCAAGCGAAATGTGCGGCCAAGGACGA
TCAATGTCAAAAGTGCAGTGGACAGCTGTGCAATAATGTAGGACGCAGGG
ATTTCAAATGCATTCAATGCATTGGTTCTGATTCAGCTGATTGCAACAAG
GGTGCCACCGCCTCCTTGGCCGCCACCCAATGTGCCCTCCCCACCTCCGC
CAATTCCTACTGTTATGTCAAGGTAGTCGGCGATCAGAAGGACAGCCTCC
AGAGAGGATGTGCTCTTTCTGTTAAGGAGCAGAAGGCCTGCTTGGAGGAC
TCGAAATGCTCGCTCTGCCTGCCGGAAAACTCCAGCGACTCCGTGGCCTG
CAACAACTACGATTTGGAATTGGGACCCAAGTCCTCAGCTGAGCAAAGTA
AAAAACTCTTGAGCTACGGGTTGGCTTTCTTTGCCCTGCTCTCGCTTAAA
TTGCTGAATGCAAGCTTTCTAGACC

BO06243.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-PA 696 CG4377-RA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-RA 788 CG4377-RA 45..737 17..709 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21835499..21835825 709..383 1635 100 Minus
2R 25286936 2R 21836103..21836313 227..17 1055 100 Minus
2R 25286936 2R 21835890..21836044 382..228 775 100 Minus
Blast to na_te.dros performed on 2015-02-11 02:59:27 has no hits.

BO06243.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:06 Download gff for BO06243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-PA 1..696 17..713 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:47 Download gff for BO06243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-PA 1..696 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:16 Download gff for BO06243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 45..744 17..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:57 Download gff for BO06243.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 45..744 17..718 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:57 Download gff for BO06243.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 21835890..21836044 228..382 100 <- Minus
2R 21836103..21836313 17..227 100   Minus
2R 21835491..21835825 383..718 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:16 Download gff for BO06243.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17722996..17723330 383..718 98 <- Minus
arm_2R 17723395..17723549 228..382 100 <- Minus
arm_2R 17723608..17723818 17..227 100   Minus

BO06243.complete Sequence

727 bp (727 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630311

> BO06243.complete
GAAGTTATCAGTCGACATGTTGCAATCGGGCAAATTTGTTATACTACTGG
CTTTATTCCTGGCTTCACGGGAAATCTCAGGAGAAATTTCTAGGGAGGTG
CGCAATTCAGCTGAATCGCCAAAATGTTACAGCTGTGAAGGCATAAATTG
TTCGAGAACCACTCGTCAAAACGCCACCGTTAGCTGTTCTGATAGACTGG
ACGTTTGCGTCACCATTTATGAGGATTTTGCTGTTAGTGAGCGCGGTTGC
TTTTCTCAAATCTCTTTGGCTGGTCAAGCGAAATGTGCGGCCAAGGACGA
TCAATGTCAAAAGTGCAGTGGACAGCTGTGCAATAATGTAGGACGCAGGG
ATTTCAAATGCATTCAATGCATTGGTTCTGATTCAGCTGATTGCAACAAG
GGTGCCACCGCCTCCTTGGCCGCCACCCAATGTGCCCTCCCCACCTCCGC
CAATTCCTACTGTTATGTCAAGGTAGTCGGCGATCAGAAGGACAGCCTCC
AGAGAGGATGTGCTCTTTCTGTTAAGGAGCAGAAGGCCTGCTTGGAGGAC
TCGAAATGCTCGCTCTGCCTGCCGGAAAACTCCAGCGACTCCGTGGCCTG
CAACAACTACGATTTGGAATTGGGACCCAAGTCCTCAGCTGAGCAAAGTA
AAAAACTCTTGAGCTACGGGTTGGCTTTCTTTGCCCTGCTCTCGCTTAAA
TTGCTGAATGCAAGCTTTCTAGACCAT

BO06243.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-RA 696 CG4377-PA 1..693 17..709 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-RA 788 CG4377-RA 45..737 17..709 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:58
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 21835499..21835825 709..383 1635 100 Minus
2R 25286936 2R 21836103..21836313 227..17 1055 100 Minus
2R 25286936 2R 21835890..21836044 382..228 775 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:06:59 has no hits.

BO06243.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:55 Download gff for BO06243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 1..696 17..713 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:08 Download gff for BO06243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 18..717 17..718 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:03 Download gff for BO06243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 50..737 22..711 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:55 Download gff for BO06243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 18..717 17..718 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:39 Download gff for BO06243.complete
Subject Subject Range Query Range Percent Splice Strand
CG4377-RA 50..737 22..711 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:39 Download gff for BO06243.complete
Subject Subject Range Query Range Percent Splice Strand
2R 21835497..21835825 383..711 99 <- Minus
2R 21835890..21836044 228..382 100 <- Minus
2R 21836103..21836308 22..227 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:03 Download gff for BO06243.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17723395..17723549 228..382 100 <- Minus
arm_2R 17723608..17723813 22..227 100   Minus
arm_2R 17723002..17723330 383..711 99 <- Minus

BO06243.pep Sequence

Translation from 16 to 727

> BO06243.pep
MLQSGKFVILLALFLASREISGEISREVRNSAESPKCYSCEGINCSRTTR
QNATVSCSDRLDVCVTIYEDFAVSERGCFSQISLAGQAKCAAKDDQCQKC
SGQLCNNVGRRDFKCIQCIGSDSADCNKGATASLAATQCALPTSANSYCY
VKVVGDQKDSLQRGCALSVKEQKACLEDSKCSLCLPENSSDSVACNNYDL
ELGPKSSAEQSKKLLSYGLAFFALLSLKLLNASFLDH

BO06243.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG4377-PA 231 CG4377-PA 1..231 1..231 1201 100 Plus
CG4363-PA 199 CG4363-PA 30..183 37..196 322 41.2 Plus
CG34040-PA 281 CG34040-PA 23..174 34..186 286 36.3 Plus