Clone Sequence Records
BO06243.3prime Sequence
725 bp (724 high quality bases) assembled on 2005-12-03
> BO06243.3prime
ATGGTCTAGAAAGCTTGCATTCAGCAATTTAAGCGAGAGCAGGGCAAAGA
AAGCCAACCCGTAGCTCAAGAGTTTTTTACTTTGCTCAGCTGAGGACTTG
GGTCCCAATTCCAAATCGTAGTTGTTGCAGGCCACGGAGTCGCTGGAGTT
TTCCGGCAGGCAGAGCGAGCATTTCGAGTCCTCCAAGCAGGCCTTCTGCT
CCTTAACAGAAAGAGCACATCCTCTCTGGAGGCTGTCCTTCTGATCGCCG
ACTACCTTGACATAACAGTAGGAATTGGCGGAGGTGGGGAGGGCACATTG
GGTGGCGGCCAAGGAGGCGGTGGCACCCTTGTTGCAATCAGCTGAATCAG
AACCAATGCATTGAATGCATTTGAAATCCCTGCGTCCTACATTATTGCAC
AGCTGTCCACTGCACTTTTGACATTGATCGTCCTTGGCCGCACATTTCGC
TTGACCAGCCAAAGAGATTTGAGAAAAGCAACCGCGCTCACTAACAGCAA
AATCCTCATAAATGGTGACGCAAACGTCCAGTCTATCAGAACAGCTAACG
GTGGCGTTTTGACGAGTGGTTCTCGAACAATTTATGCCTTCACAGCTGTA
ACATTTTGGCGATTCAGCTGAATTGCGCACCTCCCTAGAAATTTCTCCTG
AGATTTCCCGTGAAGCCAGGAATAAAGCCAGTAGTATAACAAATTTGCCC
GATTGCAACATGTCGACTGATAACT
BO06243.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-PA | 696 | CG4377-RA | 1..693 | 711..19 | 3465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:06:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-RA | 788 | CG4377-RA | 45..737 | 711..19 | 3465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:06:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21835499..21835825 | 19..345 | 1635 | 100 | Plus |
2R | 25286936 | 2R | 21836103..21836313 | 501..711 | 1055 | 100 | Plus |
2R | 25286936 | 2R | 21835890..21836044 | 346..500 | 775 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 12:06:14 has no hits.
BO06243.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:05 Download gff for
BO06243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-PA | 1..696 | 15..711 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:45 Download gff for
BO06243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-PA | 1..696 | 15..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:45 Download gff for
BO06243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 45..744 | 10..711 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:28 Download gff for
BO06243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 45..744 | 10..711 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:28 Download gff for
BO06243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21835491..21835825 | 10..345 | 98 | <- | Plus |
2R | 21835890..21836044 | 346..500 | 100 | <- | Plus |
2R | 21836103..21836313 | 501..711 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:45 Download gff for
BO06243.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17722996..17723330 | 10..345 | 98 | <- | Plus |
arm_2R | 17723395..17723549 | 346..500 | 100 | <- | Plus |
arm_2R | 17723608..17723818 | 501..711 | 100 | | Plus |
BO06243.5prime Sequence
725 bp (724 high quality bases) assembled on 2005-12-03
> BO06243.5prime
GAAGTTATCAGTCGACATGTTGCAATCGGGCAAATTTGTTATACTACTGG
CTTTATTCCTGGCTTCACGGGAAATCTCAGGAGAAATTTCTAGGGAGGTG
CGCAATTCAGCTGAATCGCCAAAATGTTACAGCTGTGAAGGCATAAATTG
TTCGAGAACCACTCGTCAAAACGCCACCGTTAGCTGTTCTGATAGACTGG
ACGTTTGCGTCACCATTTATGAGGATTTTGCTGTTAGTGAGCGCGGTTGC
TTTTCTCAAATCTCTTTGGCTGGTCAAGCGAAATGTGCGGCCAAGGACGA
TCAATGTCAAAAGTGCAGTGGACAGCTGTGCAATAATGTAGGACGCAGGG
ATTTCAAATGCATTCAATGCATTGGTTCTGATTCAGCTGATTGCAACAAG
GGTGCCACCGCCTCCTTGGCCGCCACCCAATGTGCCCTCCCCACCTCCGC
CAATTCCTACTGTTATGTCAAGGTAGTCGGCGATCAGAAGGACAGCCTCC
AGAGAGGATGTGCTCTTTCTGTTAAGGAGCAGAAGGCCTGCTTGGAGGAC
TCGAAATGCTCGCTCTGCCTGCCGGAAAACTCCAGCGACTCCGTGGCCTG
CAACAACTACGATTTGGAATTGGGACCCAAGTCCTCAGCTGAGCAAAGTA
AAAAACTCTTGAGCTACGGGTTGGCTTTCTTTGCCCTGCTCTCGCTTAAA
TTGCTGAATGCAAGCTTTCTAGACC
BO06243.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-PA | 696 | CG4377-RA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-RA | 788 | CG4377-RA | 45..737 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21835499..21835825 | 709..383 | 1635 | 100 | Minus |
2R | 25286936 | 2R | 21836103..21836313 | 227..17 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 21835890..21836044 | 382..228 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:59:27 has no hits.
BO06243.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:06 Download gff for
BO06243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-PA | 1..696 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:47 Download gff for
BO06243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-PA | 1..696 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:16 Download gff for
BO06243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 45..744 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:38:57 Download gff for
BO06243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 45..744 | 17..718 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:38:57 Download gff for
BO06243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21835890..21836044 | 228..382 | 100 | <- | Minus |
2R | 21836103..21836313 | 17..227 | 100 | | Minus |
2R | 21835491..21835825 | 383..718 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:16 Download gff for
BO06243.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17722996..17723330 | 383..718 | 98 | <- | Minus |
arm_2R | 17723395..17723549 | 228..382 | 100 | <- | Minus |
arm_2R | 17723608..17723818 | 17..227 | 100 | | Minus |
BO06243.complete Sequence
727 bp (727 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630311
> BO06243.complete
GAAGTTATCAGTCGACATGTTGCAATCGGGCAAATTTGTTATACTACTGG
CTTTATTCCTGGCTTCACGGGAAATCTCAGGAGAAATTTCTAGGGAGGTG
CGCAATTCAGCTGAATCGCCAAAATGTTACAGCTGTGAAGGCATAAATTG
TTCGAGAACCACTCGTCAAAACGCCACCGTTAGCTGTTCTGATAGACTGG
ACGTTTGCGTCACCATTTATGAGGATTTTGCTGTTAGTGAGCGCGGTTGC
TTTTCTCAAATCTCTTTGGCTGGTCAAGCGAAATGTGCGGCCAAGGACGA
TCAATGTCAAAAGTGCAGTGGACAGCTGTGCAATAATGTAGGACGCAGGG
ATTTCAAATGCATTCAATGCATTGGTTCTGATTCAGCTGATTGCAACAAG
GGTGCCACCGCCTCCTTGGCCGCCACCCAATGTGCCCTCCCCACCTCCGC
CAATTCCTACTGTTATGTCAAGGTAGTCGGCGATCAGAAGGACAGCCTCC
AGAGAGGATGTGCTCTTTCTGTTAAGGAGCAGAAGGCCTGCTTGGAGGAC
TCGAAATGCTCGCTCTGCCTGCCGGAAAACTCCAGCGACTCCGTGGCCTG
CAACAACTACGATTTGGAATTGGGACCCAAGTCCTCAGCTGAGCAAAGTA
AAAAACTCTTGAGCTACGGGTTGGCTTTCTTTGCCCTGCTCTCGCTTAAA
TTGCTGAATGCAAGCTTTCTAGACCAT
BO06243.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:07:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-RA | 696 | CG4377-PA | 1..693 | 17..709 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:07:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-RA | 788 | CG4377-RA | 45..737 | 17..709 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:06:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21835499..21835825 | 709..383 | 1635 | 100 | Minus |
2R | 25286936 | 2R | 21836103..21836313 | 227..17 | 1055 | 100 | Minus |
2R | 25286936 | 2R | 21835890..21836044 | 382..228 | 775 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:06:59 has no hits.
BO06243.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 13:38:55 Download gff for
BO06243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 1..696 | 17..713 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:01:08 Download gff for
BO06243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 18..717 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:34:03 Download gff for
BO06243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 50..737 | 22..711 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 13:38:55 Download gff for
BO06243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 18..717 | 17..718 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:03:39 Download gff for
BO06243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4377-RA | 50..737 | 22..711 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:03:39 Download gff for
BO06243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21835497..21835825 | 383..711 | 99 | <- | Minus |
2R | 21835890..21836044 | 228..382 | 100 | <- | Minus |
2R | 21836103..21836308 | 22..227 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:34:03 Download gff for
BO06243.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17723395..17723549 | 228..382 | 100 | <- | Minus |
arm_2R | 17723608..17723813 | 22..227 | 100 | | Minus |
arm_2R | 17723002..17723330 | 383..711 | 99 | <- | Minus |
BO06243.pep Sequence
Translation from 16 to 727
> BO06243.pep
MLQSGKFVILLALFLASREISGEISREVRNSAESPKCYSCEGINCSRTTR
QNATVSCSDRLDVCVTIYEDFAVSERGCFSQISLAGQAKCAAKDDQCQKC
SGQLCNNVGRRDFKCIQCIGSDSADCNKGATASLAATQCALPTSANSYCY
VKVVGDQKDSLQRGCALSVKEQKACLEDSKCSLCLPENSSDSVACNNYDL
ELGPKSSAEQSKKLLSYGLAFFALLSLKLLNASFLDH
BO06243.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:25:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4377-PA | 231 | CG4377-PA | 1..231 | 1..231 | 1201 | 100 | Plus |
CG4363-PA | 199 | CG4363-PA | 30..183 | 37..196 | 322 | 41.2 | Plus |
CG34040-PA | 281 | CG34040-PA | 23..174 | 34..186 | 286 | 36.3 | Plus |