Clone BO06244 Report

Search the DGRC for BO06244

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:44
Vector:pDNR-Dual
Associated Gene/Transcriptstil-RA
Protein status:BO06244.pep: validated full length
Sequenced Size:997

Clone Sequence Records

BO06244.3prime Sequence

884 bp (763 high quality bases) assembled on 2005-12-03

> BO06244.3prime
ATGGTCTAGAAAGCTTGCCAGATTCGGCTCAAACTGAAAATTCGGATTTA
GAAACTTGAACTTGGCTGCCTCCAACAACATGCGGTTGTGCTCGATGCGG
TTGCGGCAGTGCAACTCCTGACTTATTTGGGCCATCGAGCGCTCCAGGCG
CTGCAGCACATCTCGCTGAGGATGCTCCAAGAAGTGGGCCATGGATAGCG
ATTGTGAGAGGGCCTGGGAGCGTGAGTACTCCATGGAGACGTCCTCCATC
GATGAAGCCAGCGATCCACTGGATTTACTCTCGCCCTGCACTGGTGGAAC
CTGGCTCAAATCTATGGCAGCCGGCTGATCAGCCAGGAATGACGGACCAC
TACCCTGCTCAGGCTTGACAGGACGACCCAGAAAGGAGACACTGGCAGGA
GTCGAACCGCCGGGCAGTGTTTCCACCGAGATGTTTGAGACGTTCTGAAC
GACAATTCCCAAGTTCTTAGGGATATTTGGTAGATTAGCTTTATCTGAAG
TGGAATCTTCGAGCTTGCGGGTAGCTCCCTCCTGCTCTTGCTTGTGGCGC
TGAAAAACCGTTTTGATTTTCAGCTCGTGGCTTTCGTTTCCAGACGGAAC
AGCAGCTTGCATGTCCACGAACACCCCGGAATCGCTCTGCGCAGCTGTAC
TTGTGGCTGCAACCGCAACTGGTGCCTTCTTGCGCGACTTGGCAAAGCGT
CGGTTTTTCATGATCCGATCACGGCGTTCTTCCAGTGCAGCCACCTTCAT
TTCATGGAGTTTGCCCAACAAGGAACTATGACGTCTCTTGATGTGCATGT
GAAAGTTCCCGGTGGGAGCGACACTGCCGCGATAAATCCGATCCGGCGGA
CAGTAGCAGCACTTGACCGTAACATTGTCGCCCA

BO06244.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG8592-PA 966 stil-RA 167..963 815..19 3985 100 Minus
CG8592-PA 966 stil-RA 98..162 884..820 325 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:39
Subject Length Description Subject Range Query Range Score Percent Strand
stil-RA 1171 CG8592-RA 180..1045 884..19 4285 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:01:33
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12571335..12571757 441..19 2115 100 Minus
2R 25286936 2R 12570718..12570992 788..514 1375 100 Minus
2R 25286936 2R 12570546..12570643 884..787 430 95.9 Minus
2R 25286936 2R 12571143..12571218 515..440 380 100 Minus
Blast to na_te.dros performed on 2015-02-13 01:01:36 has no hits.

BO06244.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:07 Download gff for BO06244.3prime
Subject Subject Range Query Range Percent Splice Strand
stil-PA 99..966 15..883 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:48 Download gff for BO06244.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8592-PA 99..966 15..883 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:32 Download gff for BO06244.3prime
Subject Subject Range Query Range Percent Splice Strand
stil-RA 181..1049 14..883 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:29 Download gff for BO06244.3prime
Subject Subject Range Query Range Percent Splice Strand
stil-RA 181..1049 14..883 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:29 Download gff for BO06244.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 12570547..12570643 787..883 97 -> Minus
2R 12570720..12570992 514..786 100 -> Minus
2R 12571145..12571216 442..513 100 -> Minus
2R 12571335..12571761 14..441 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:32 Download gff for BO06244.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8458052..8458148 787..883 97 -> Minus
arm_2R 8458225..8458497 514..786 100 -> Minus
arm_2R 8458650..8458721 442..513 100 -> Minus
arm_2R 8458840..8459266 14..441 99   Minus

BO06244.5prime Sequence

932 bp (808 high quality bases) assembled on 2005-12-03

> BO06244.5prime
GAAGTTATCAGTCGACATGTCCGTAAACTTGGACGGTTCTGAAGAAAAGA
TGGAGCTGAAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGTATCGC
ATCGAGAAGCAGGTGGGCGACAATGTTACGGTCAAGTGCTGCTACTGTCC
GCCGGATCGGATTTATCGCGGCAGTGTCCGCTCCACCGGGAACTTTCACA
TGCACATCAAGAGACGTCATAGTTCCTTGTTGGGCAAACTCCATGAAATG
AAGGTGGCTGCACTGGAAGAACGCCGTGATCGGATCATGAAAAACCGACG
CTTTGCCAAGTCGCGCAAGAAGGCACCAGTTGCGGTTGCAGCCACAAGTA
CAGCTGCGCAGAGCGATTCCGGGGTGTTCGTGGACATGCAAGCTGCTGTT
CCGTCTGGAAACGAAAGCCACGAGCTGAAAATCAAAACGGTTTTTCAGCG
CCACAAGCAAGAGCAGGAGGGAGCTACCCGCAAGCTCGAAGATTCCACTT
CAGATAAAGCTAATCTACCAAATATCCCTAAGAACTTGGGAATTGTCGTT
CAGAACGTCTCAAACATCTCGGTGGAAACACTGCCCGGCGGTTCGACTCC
TGCCAGTGTCTCCTTTCTGGGTCGTCCTGTCAAGCCTGAGCAGGGTAGTG
GTCCGTCATTCCTGGCTGATCAGCCGGCTGCCATAGATTTGAGCCAGGTT
CCACCAGTGCAGGGCGAGAGTAAATCCAGTGGATCGCTGGCTTCATCGAT
GGAGGACGTCTCCATGGAGTACTCACGCTCCCAGGCCCTCTCACAATCGC
TATCCATGGCCCACTTCTTGGAGCATCCTCAGCGAGATGTGCTGCAGCGC
CTGGAGCGCTCGATGGCCCAAATAAGTCAGGAAGTGCACTGCCGCAACCG
CATCGAGCACACCGCATGTTGTTGGAGGCAGC

BO06244.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG8592-PA 966 stil-RA 1..895 17..911 4425 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:15
Subject Length Description Subject Range Query Range Score Percent Strand
stil-RA 1171 CG8592-RA 83..999 17..932 4530 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:09
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12571335..12571711 557..932 1805 99.2 Plus
2R 25286936 2R 12570718..12570992 210..484 1375 100 Plus
2R 25286936 2R 12570449..12570643 17..211 975 100 Plus
2R 25286936 2R 12571143..12571218 483..558 380 100 Plus
Blast to na_te.dros performed on 2015-02-12 06:54:12 has no hits.

BO06244.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:08 Download gff for BO06244.5prime
Subject Subject Range Query Range Percent Splice Strand
stil-PA 1..917 17..932 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:49 Download gff for BO06244.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8592-PA 1..917 17..932 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:40 Download gff for BO06244.5prime
Subject Subject Range Query Range Percent Splice Strand
stil-RA 83..999 17..932 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:25:02 Download gff for BO06244.5prime
Subject Subject Range Query Range Percent Splice Strand
stil-RA 83..999 17..932 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:25:02 Download gff for BO06244.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 12570449..12570643 17..211 100 -> Plus
2R 12570720..12570992 212..484 100 -> Plus
2R 12571145..12571216 485..556 100 -> Plus
2R 12571335..12571711 557..932 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:40 Download gff for BO06244.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8458225..8458497 212..484 100 -> Plus
arm_2R 8458650..8458721 485..556 100 -> Plus
arm_2R 8457954..8458148 17..211 100 -> Plus
arm_2R 8458840..8459216 557..932 99   Plus

BO06244.complete Sequence

997 bp (997 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630312

> BO06244.complete
GAAGTTATCAGTCGACATGTCCGTAAACTTGGACGGTTCTGAAGAAAAGA
TGGAGCTGAAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGTATCGC
ATCGAGAAGCAGGTGGGCGACAATGTTACGGTCAAGTGCTGCTACTGTCC
GCCGGATCGGATTTATCGCGGCAGTGTCCGCTCCACCGGGAACTTTCACA
TGCACATCAAGAGACGTCATAGTTCCTTGTTGGGCAAACTCCATGAAATG
AAGGTGGCTGCACTGGAAGAACGCCGTGATCGGATCATGAAAAACCGACG
CTTTGCCAAGTCGCGCAAGAAGGCACCAGTTGCGGTTGCAGCCACAAGTA
CAGCTGCGCAGAGCGATTCCGGGGTGTTCGTGGACATGCAAGCTGCTGTT
CCGTCTGGAAACGAAAGCCACGAGCTGAAAATCAAAACGGTTTTTCAGCG
CCACAAGCAAGAGCAGGAGGGAGCTACCCGCAAGCTCGAAGATTCCACTT
CAGATAAAGCTAATCTACCAAATATCCCTAAGAACTTGGGAATTGTCGTT
CAGAACGTCTCAAACATCTCGGTGGAAACACTGCCCGGCGGTTCGACTCC
TGCCAGTGTCTCCTTTCTGGGTCGTCCTGTCAAGCCTGAGCAGGGTAGTG
GTCCGTCATTCCTGGCTGATCAGCCGGCTGCCATAGATTTGAGCCAGGTT
CCACCAGTGCAGGGCGAGAGTAAATCCAGTGGATCGCTGGCTTCATCGAT
GGAGGACGTCTCCATGGAGTACTCACGCTCCCAGGCCCTCTCACAATCGC
TATCCATGGCCCACTTCTTGGAGCATCCTCAGCGAGATGTGCTGCAGCGC
CTGGAGCGCTCGATGGCCCAAATAAGTCAGGAGTTGCACTGCCGCAACCG
CATCGAGCACAACCGCATGTTGTTGGAGGCAGCCAAGTTCAAGTTTCTAA
ATCCGAATTTTCAGTTTGAGCCGAATCTGGCAAGCTTTCTAGACCAT

BO06244.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:42
Subject Length Description Subject Range Query Range Score Percent Strand
stil-RA 966 CG8592-PA 1..963 17..979 4815 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:43
Subject Length Description Subject Range Query Range Score Percent Strand
stil-RA 1171 CG8592-RA 83..1045 17..979 4815 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:39
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 12571335..12571757 557..979 2115 100 Plus
2R 25286936 2R 12570718..12570992 210..484 1375 100 Plus
2R 25286936 2R 12570449..12570643 17..211 975 100 Plus
2R 25286936 2R 12571143..12571218 483..558 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 00:24:40 has no hits.

BO06244.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:07 Download gff for BO06244.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 1..966 17..983 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:41 Download gff for BO06244.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 94..1060 17..984 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:03 Download gff for BO06244.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 83..1045 17..981 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:07 Download gff for BO06244.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 94..1060 17..984 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:22 Download gff for BO06244.complete
Subject Subject Range Query Range Percent Splice Strand
stil-RA 83..1045 17..981 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:22 Download gff for BO06244.complete
Subject Subject Range Query Range Percent Splice Strand
2R 12570449..12570643 17..211 100 -> Plus
2R 12570720..12570992 212..484 100 -> Plus
2R 12571145..12571216 485..556 100 -> Plus
2R 12571335..12571757 557..981 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:03 Download gff for BO06244.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 8457954..8458148 17..211 100 -> Plus
arm_2R 8458225..8458497 212..484 100 -> Plus
arm_2R 8458650..8458721 485..556 100 -> Plus
arm_2R 8458840..8459262 557..981 99   Plus

BO06244.pep Sequence

Translation from 16 to 997

> BO06244.pep
MSVNLDGSEEKMELKKHVPYILNGELYRIEKQVGDNVTVKCCYCPPDRIY
RGSVRSTGNFHMHIKRRHSSLLGKLHEMKVAALEERRDRIMKNRRFAKSR
KKAPVAVAATSTAAQSDSGVFVDMQAAVPSGNESHELKIKTVFQRHKQEQ
EGATRKLEDSTSDKANLPNIPKNLGIVVQNVSNISVETLPGGSTPASVSF
LGRPVKPEQGSGPSFLADQPAAIDLSQVPPVQGESKSSGSLASSMEDVSM
EYSRSQALSQSLSMAHFLEHPQRDVLQRLERSMAQISQELHCRNRIEHNR
MLLEAAKFKFLNPNFQFEPNLASFLDH

BO06244.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:11
Subject Length Description Subject Range Query Range Score Percent Strand
stil-PA 321 CG8592-PA 1..321 1..321 1635 100 Plus