Clone Sequence Records
BO06244.3prime Sequence
884 bp (763 high quality bases) assembled on 2005-12-03
> BO06244.3prime
ATGGTCTAGAAAGCTTGCCAGATTCGGCTCAAACTGAAAATTCGGATTTA
GAAACTTGAACTTGGCTGCCTCCAACAACATGCGGTTGTGCTCGATGCGG
TTGCGGCAGTGCAACTCCTGACTTATTTGGGCCATCGAGCGCTCCAGGCG
CTGCAGCACATCTCGCTGAGGATGCTCCAAGAAGTGGGCCATGGATAGCG
ATTGTGAGAGGGCCTGGGAGCGTGAGTACTCCATGGAGACGTCCTCCATC
GATGAAGCCAGCGATCCACTGGATTTACTCTCGCCCTGCACTGGTGGAAC
CTGGCTCAAATCTATGGCAGCCGGCTGATCAGCCAGGAATGACGGACCAC
TACCCTGCTCAGGCTTGACAGGACGACCCAGAAAGGAGACACTGGCAGGA
GTCGAACCGCCGGGCAGTGTTTCCACCGAGATGTTTGAGACGTTCTGAAC
GACAATTCCCAAGTTCTTAGGGATATTTGGTAGATTAGCTTTATCTGAAG
TGGAATCTTCGAGCTTGCGGGTAGCTCCCTCCTGCTCTTGCTTGTGGCGC
TGAAAAACCGTTTTGATTTTCAGCTCGTGGCTTTCGTTTCCAGACGGAAC
AGCAGCTTGCATGTCCACGAACACCCCGGAATCGCTCTGCGCAGCTGTAC
TTGTGGCTGCAACCGCAACTGGTGCCTTCTTGCGCGACTTGGCAAAGCGT
CGGTTTTTCATGATCCGATCACGGCGTTCTTCCAGTGCAGCCACCTTCAT
TTCATGGAGTTTGCCCAACAAGGAACTATGACGTCTCTTGATGTGCATGT
GAAAGTTCCCGGTGGGAGCGACACTGCCGCGATAAATCCGATCCGGCGGA
CAGTAGCAGCACTTGACCGTAACATTGTCGCCCA
BO06244.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8592-PA | 966 | stil-RA | 167..963 | 815..19 | 3985 | 100 | Minus |
CG8592-PA | 966 | stil-RA | 98..162 | 884..820 | 325 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:01:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stil-RA | 1171 | CG8592-RA | 180..1045 | 884..19 | 4285 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:01:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12571335..12571757 | 441..19 | 2115 | 100 | Minus |
2R | 25286936 | 2R | 12570718..12570992 | 788..514 | 1375 | 100 | Minus |
2R | 25286936 | 2R | 12570546..12570643 | 884..787 | 430 | 95.9 | Minus |
2R | 25286936 | 2R | 12571143..12571218 | 515..440 | 380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:01:36 has no hits.
BO06244.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:07 Download gff for
BO06244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-PA | 99..966 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:48 Download gff for
BO06244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8592-PA | 99..966 | 15..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:32 Download gff for
BO06244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 181..1049 | 14..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:07:29 Download gff for
BO06244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 181..1049 | 14..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:07:29 Download gff for
BO06244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12570547..12570643 | 787..883 | 97 | -> | Minus |
2R | 12570720..12570992 | 514..786 | 100 | -> | Minus |
2R | 12571145..12571216 | 442..513 | 100 | -> | Minus |
2R | 12571335..12571761 | 14..441 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:32 Download gff for
BO06244.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8458052..8458148 | 787..883 | 97 | -> | Minus |
arm_2R | 8458225..8458497 | 514..786 | 100 | -> | Minus |
arm_2R | 8458650..8458721 | 442..513 | 100 | -> | Minus |
arm_2R | 8458840..8459266 | 14..441 | 99 | | Minus |
BO06244.5prime Sequence
932 bp (808 high quality bases) assembled on 2005-12-03
> BO06244.5prime
GAAGTTATCAGTCGACATGTCCGTAAACTTGGACGGTTCTGAAGAAAAGA
TGGAGCTGAAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGTATCGC
ATCGAGAAGCAGGTGGGCGACAATGTTACGGTCAAGTGCTGCTACTGTCC
GCCGGATCGGATTTATCGCGGCAGTGTCCGCTCCACCGGGAACTTTCACA
TGCACATCAAGAGACGTCATAGTTCCTTGTTGGGCAAACTCCATGAAATG
AAGGTGGCTGCACTGGAAGAACGCCGTGATCGGATCATGAAAAACCGACG
CTTTGCCAAGTCGCGCAAGAAGGCACCAGTTGCGGTTGCAGCCACAAGTA
CAGCTGCGCAGAGCGATTCCGGGGTGTTCGTGGACATGCAAGCTGCTGTT
CCGTCTGGAAACGAAAGCCACGAGCTGAAAATCAAAACGGTTTTTCAGCG
CCACAAGCAAGAGCAGGAGGGAGCTACCCGCAAGCTCGAAGATTCCACTT
CAGATAAAGCTAATCTACCAAATATCCCTAAGAACTTGGGAATTGTCGTT
CAGAACGTCTCAAACATCTCGGTGGAAACACTGCCCGGCGGTTCGACTCC
TGCCAGTGTCTCCTTTCTGGGTCGTCCTGTCAAGCCTGAGCAGGGTAGTG
GTCCGTCATTCCTGGCTGATCAGCCGGCTGCCATAGATTTGAGCCAGGTT
CCACCAGTGCAGGGCGAGAGTAAATCCAGTGGATCGCTGGCTTCATCGAT
GGAGGACGTCTCCATGGAGTACTCACGCTCCCAGGCCCTCTCACAATCGC
TATCCATGGCCCACTTCTTGGAGCATCCTCAGCGAGATGTGCTGCAGCGC
CTGGAGCGCTCGATGGCCCAAATAAGTCAGGAAGTGCACTGCCGCAACCG
CATCGAGCACACCGCATGTTGTTGGAGGCAGC
BO06244.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8592-PA | 966 | stil-RA | 1..895 | 17..911 | 4425 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stil-RA | 1171 | CG8592-RA | 83..999 | 17..932 | 4530 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12571335..12571711 | 557..932 | 1805 | 99.2 | Plus |
2R | 25286936 | 2R | 12570718..12570992 | 210..484 | 1375 | 100 | Plus |
2R | 25286936 | 2R | 12570449..12570643 | 17..211 | 975 | 100 | Plus |
2R | 25286936 | 2R | 12571143..12571218 | 483..558 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:54:12 has no hits.
BO06244.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:08 Download gff for
BO06244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-PA | 1..917 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:49 Download gff for
BO06244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8592-PA | 1..917 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:40 Download gff for
BO06244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 83..999 | 17..932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:25:02 Download gff for
BO06244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 83..999 | 17..932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:25:02 Download gff for
BO06244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12570449..12570643 | 17..211 | 100 | -> | Plus |
2R | 12570720..12570992 | 212..484 | 100 | -> | Plus |
2R | 12571145..12571216 | 485..556 | 100 | -> | Plus |
2R | 12571335..12571711 | 557..932 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:40 Download gff for
BO06244.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8458225..8458497 | 212..484 | 100 | -> | Plus |
arm_2R | 8458650..8458721 | 485..556 | 100 | -> | Plus |
arm_2R | 8457954..8458148 | 17..211 | 100 | -> | Plus |
arm_2R | 8458840..8459216 | 557..932 | 99 | | Plus |
BO06244.complete Sequence
997 bp (997 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630312
> BO06244.complete
GAAGTTATCAGTCGACATGTCCGTAAACTTGGACGGTTCTGAAGAAAAGA
TGGAGCTGAAAAAGCATGTGCCGTACATCCTGAACGGGGAACTGTATCGC
ATCGAGAAGCAGGTGGGCGACAATGTTACGGTCAAGTGCTGCTACTGTCC
GCCGGATCGGATTTATCGCGGCAGTGTCCGCTCCACCGGGAACTTTCACA
TGCACATCAAGAGACGTCATAGTTCCTTGTTGGGCAAACTCCATGAAATG
AAGGTGGCTGCACTGGAAGAACGCCGTGATCGGATCATGAAAAACCGACG
CTTTGCCAAGTCGCGCAAGAAGGCACCAGTTGCGGTTGCAGCCACAAGTA
CAGCTGCGCAGAGCGATTCCGGGGTGTTCGTGGACATGCAAGCTGCTGTT
CCGTCTGGAAACGAAAGCCACGAGCTGAAAATCAAAACGGTTTTTCAGCG
CCACAAGCAAGAGCAGGAGGGAGCTACCCGCAAGCTCGAAGATTCCACTT
CAGATAAAGCTAATCTACCAAATATCCCTAAGAACTTGGGAATTGTCGTT
CAGAACGTCTCAAACATCTCGGTGGAAACACTGCCCGGCGGTTCGACTCC
TGCCAGTGTCTCCTTTCTGGGTCGTCCTGTCAAGCCTGAGCAGGGTAGTG
GTCCGTCATTCCTGGCTGATCAGCCGGCTGCCATAGATTTGAGCCAGGTT
CCACCAGTGCAGGGCGAGAGTAAATCCAGTGGATCGCTGGCTTCATCGAT
GGAGGACGTCTCCATGGAGTACTCACGCTCCCAGGCCCTCTCACAATCGC
TATCCATGGCCCACTTCTTGGAGCATCCTCAGCGAGATGTGCTGCAGCGC
CTGGAGCGCTCGATGGCCCAAATAAGTCAGGAGTTGCACTGCCGCAACCG
CATCGAGCACAACCGCATGTTGTTGGAGGCAGCCAAGTTCAAGTTTCTAA
ATCCGAATTTTCAGTTTGAGCCGAATCTGGCAAGCTTTCTAGACCAT
BO06244.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:24:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stil-RA | 966 | CG8592-PA | 1..963 | 17..979 | 4815 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:24:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stil-RA | 1171 | CG8592-RA | 83..1045 | 17..979 | 4815 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:24:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 12571335..12571757 | 557..979 | 2115 | 100 | Plus |
2R | 25286936 | 2R | 12570718..12570992 | 210..484 | 1375 | 100 | Plus |
2R | 25286936 | 2R | 12570449..12570643 | 17..211 | 975 | 100 | Plus |
2R | 25286936 | 2R | 12571143..12571218 | 483..558 | 380 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:24:40 has no hits.
BO06244.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:07 Download gff for
BO06244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 1..966 | 17..983 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:41 Download gff for
BO06244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 94..1060 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:24:03 Download gff for
BO06244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 83..1045 | 17..981 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:07 Download gff for
BO06244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 94..1060 | 17..984 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:31:22 Download gff for
BO06244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
stil-RA | 83..1045 | 17..981 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:31:22 Download gff for
BO06244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 12570449..12570643 | 17..211 | 100 | -> | Plus |
2R | 12570720..12570992 | 212..484 | 100 | -> | Plus |
2R | 12571145..12571216 | 485..556 | 100 | -> | Plus |
2R | 12571335..12571757 | 557..981 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:24:03 Download gff for
BO06244.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 8457954..8458148 | 17..211 | 100 | -> | Plus |
arm_2R | 8458225..8458497 | 212..484 | 100 | -> | Plus |
arm_2R | 8458650..8458721 | 485..556 | 100 | -> | Plus |
arm_2R | 8458840..8459262 | 557..981 | 99 | | Plus |
BO06244.pep Sequence
Translation from 16 to 997
> BO06244.pep
MSVNLDGSEEKMELKKHVPYILNGELYRIEKQVGDNVTVKCCYCPPDRIY
RGSVRSTGNFHMHIKRRHSSLLGKLHEMKVAALEERRDRIMKNRRFAKSR
KKAPVAVAATSTAAQSDSGVFVDMQAAVPSGNESHELKIKTVFQRHKQEQ
EGATRKLEDSTSDKANLPNIPKNLGIVVQNVSNISVETLPGGSTPASVSF
LGRPVKPEQGSGPSFLADQPAAIDLSQVPPVQGESKSSGSLASSMEDVSM
EYSRSQALSQSLSMAHFLEHPQRDVLQRLERSMAQISQELHCRNRIEHNR
MLLEAAKFKFLNPNFQFEPNLASFLDH
BO06244.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
stil-PA | 321 | CG8592-PA | 1..321 | 1..321 | 1635 | 100 | Plus |