Clone BO06246 Report

Search the DGRC for BO06246

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:46
Vector:pDNR-Dual
Associated Gene/TranscriptCG5412-RA
Protein status:BO06246.pep: validated full length
Sequenced Size:871

Clone Sequence Records

BO06246.3prime Sequence

869 bp (819 high quality bases) assembled on 2005-12-03

> BO06246.3prime
ATGGTCTAGAAAGCTTGCATCACTCTCGTCCAGCTCGGCCGTCATGGCCG
CCACCTCGGCATCGTTGTCGTCCTCCGCTCCGCTATCCACGAATGAGGCA
TTGCCGCTCTGCTGCAACTCCTCGTGCTCCAGGTACTCCTGCAGCCGATC
CTGGAAGAAGTTGATGAATGTCTGCTTCTGCTGCGCCGTGGCCGGGAAGT
AGTGTCCGCCGCTGTGCTCCAGCACCTCGGCGTTCTTGAAGCGCGCAGCC
AGGGACTCGCTCATCTCCTTGGGAATGATCTCATCCGTCTGTCCGTAGAT
GTGCAACGTGGGTATGCTGATGGCCTCTTCGTAGGCGCTCATGTGCACCA
GACTGCCAGACAAGAAGCCCGAGGCTAGCACAGCAAACTCCGGACGGATG
GAGGTCAACTTCTTTTTGGCCAGGCCGCATATAAGACCCACGAAACAGGC
GCCCTGTGAGAAGCCTAGCAGTCCCTGGAAAGGGCCCTGCGTCCGCCACG
CCTCCTCAACGCAGCGCAGGCTCTCCTGAAAGCCGAAGGCGGGACCACCT
TTGTTTGTTCCCTTGAAGGAGCCATCGTCCTTGTTGGCCCACCAACTCCT
CTGCTCCGGCACAGGCTCCGCCGCCGACTCCAGTGCCTTGGCCACGTGCG
GCGCCGTGATGAACACGAACTCTGCGTACTTGTTGGCGAACTTGCGGAAG
GAGCCCAGCTTGTTTTTGAAGGCTTCTCCATTCTGGCGGTAACCGTGCAG
GCACAGGACTCGCACCTTCTCGGTGATTTCCAGCTTCAGCTGCTGTTTGC
TGCTGCTGGCCCGACTGGAGCCGGCTGCCTCCACGGCCGCATCGTTGTTG
GTCATGTCGACTGATAACT

BO06246.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-PA 840 CG5412-RA 1..837 855..19 4185 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-RA 1020 CG5412-RA 87..923 855..19 4185 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20577139..20577586 855..408 2240 100 Minus
3R 32079331 3R 20577646..20578034 407..19 1945 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:55:35 has no hits.

BO06246.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:09 Download gff for BO06246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-PA 1..840 18..855 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:51 Download gff for BO06246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-PA 1..840 18..855 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:03 Download gff for BO06246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..927 13..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:39:00 Download gff for BO06246.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..927 13..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:39:00 Download gff for BO06246.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20577139..20577586 408..855 100 -> Minus
3R 20577646..20578038 13..407 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:03 Download gff for BO06246.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16402861..16403308 408..855 100 -> Minus
arm_3R 16403368..16403760 13..407 99   Minus

BO06246.5prime Sequence

852 bp (800 high quality bases) assembled on 2005-12-03

> BO06246.5prime
GAAGTTATCAGTCGACATGACCAACAACGATGCGGCCGTGGAGGCAGCCG
GCTCCAGTCGGGCCAGCAGCAGCAAACAGCAGCTGAAGCTGGAAATCACC
GAGAAGGTGCGAGTCCTGTGCCTGCACGGTTACCGCCAGAATGGAGAAGC
CTTCAAAAACAAGCTGGGCTCCTTCCGCAAGTTCGCCAACAAGTACGCAG
AGTTCGTGTTCATCACGGCGCCGCACGTGGCCAAGGCACTGGAGTCGGCG
GCGGAGCCTGTGCCGGAGCAGAGGAGTTGGTGGGCCAACAAGGACGATGG
CTCCTTCAAGGGAACAAACAAAGGTGGTCCCGCCTTCGGCTTTCAGGAGA
GCCTGCGCTGCGTTGAGGAGGCGTGGCGGACGCAGGGCCCTTTCCAGGGA
CTGCTAGGCTTCTCACAGGGCGCCTGTTTCGTGGGTCTTATATGCGGCCT
GGCCAAAAAGAAGTTGACCTCCATCCGTCCGGAGTTTGCTGTGCTAGCCT
CGGGCTTCTTGTCTGGCAGTCTGGTGCACATGAGCGCCTACGAAGAGGCC
ATCAGCATACCCACGTTGCACATCTACGGACAGACGGATGAGATCATTCC
CAAGGAGATGAGCGAGTCCCTGGCTGCGCGCTTCAAGAACGCCGAGGTGC
TGGAGCACAGCGGCGGACACTACTTCCCGGCCACGGCGCAGCAGAAGCAG
ACATTCATCAACTTCTTCCAGGATCGGCTGCAGGAGTACCTGGAGCACGA
GGAGTTGCAGCAGAGCGGCAATGCCTCATTCGTGGATAGCGGAGCGGAGG
ACGACAACGATGCCGAGGTGGCGGCCATGACGGCCGAGCTGGACGAGAGT
GA

BO06246.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-PA 840 CG5412-RA 1..836 17..852 4180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:35:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-RA 1020 CG5412-RA 87..922 17..852 4180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:35:34
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20577139..20577586 17..464 2240 100 Plus
3R 32079331 3R 20577646..20578033 465..852 1940 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:35:36 has no hits.

BO06246.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:10 Download gff for BO06246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-PA 1..835 17..851 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:52 Download gff for BO06246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-PA 1..835 17..851 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:18 Download gff for BO06246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..921 17..851 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:12 Download gff for BO06246.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..921 17..851 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:10:12 Download gff for BO06246.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20577139..20577586 17..464 100 -> Plus
3R 20577646..20578032 465..851 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:18 Download gff for BO06246.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16402861..16403308 17..464 100 -> Plus
arm_3R 16403368..16403754 465..851 100   Plus

BO06246.complete Sequence

871 bp (871 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630313

> BO06246.complete
GAAGTTATCAGTCGACATGACCAACAACGATGCGGCCGTGGAGGCAGCCG
GCTCCAGTCGGGCCAGCAGCAGCAAACAGCAGCTGAAGCTGGAAATCACC
GAGAAGGTGCGAGTCCTGTGCCTGCACGGTTACCGCCAGAATGGAGAAGC
CTTCAAAAACAAGCTGGGCTCCTTCCGCAAGTTCGCCAACAAGTACGCAG
AGTTCGTGTTCATCACGGCGCCGCACGTGGCCAAGGCACTGGAGTCGGCG
GCGGAGCCTGTGCCGGAGCAGAGGAGTTGGTGGGCCAACAAGGACGATGG
CTCCTTCAAGGGAACAAACAAAGGTGGTCCCGCCTTCGGCTTTCAGGAGA
GCCTGCGCTGCGTTGAGGAGGCGTGGCGGACGCAGGGCCCTTTCCAGGGA
CTGCTAGGCTTCTCACAGGGCGCCTGTTTCGTGGGTCTTATATGCGGCCT
GGCCAAAAAGAAGTTGACCTCCATCCGTCCGGAGTTTGCTGTGCTAGCCT
CGGGCTTCTTGTCTGGCAGTCTGGTGCACATGAGCGCCTACGAAGAGGCC
ATCAGCATACCCACGTTGCACATCTACGGACAGACGGATGAGATCATTCC
CAAGGAGATGAGCGAGTCCCTGGCTGCGCGCTTCAAGAACGCCGAGGTGC
TGGAGCACAGCGGCGGACACTACTTCCCGGCCACGGCGCAGCAGAAGCAG
ACATTCATCAACTTCTTCCAGGATCGGCTGCAGGAGTACCTGGAGCACGA
GGAGTTGCAGCAGAGCGGCAATGCCTCATTCGTGGATAGCGGAGCGGAGG
ACGACAACGATGCCGAGGTGGCGGCCATGACGGCCGAGCTGGACGAGAGT
GATGCAAGCTTTCTAGACCAT

BO06246.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-RA 840 CG5412-PA 1..837 17..853 4185 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-RA 1020 CG5412-RA 87..923 17..853 4185 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20577139..20577586 17..464 2240 100 Plus
3R 32079331 3R 20577646..20578034 465..853 1945 100 Plus
Blast to na_te.dros performed on 2014-11-27 23:47:01 has no hits.

BO06246.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:08 Download gff for BO06246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 1..840 17..854 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:44 Download gff for BO06246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 132..972 17..859 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:47 Download gff for BO06246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..923 17..855 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:09 Download gff for BO06246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 132..972 17..859 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:04 Download gff for BO06246.complete
Subject Subject Range Query Range Percent Splice Strand
CG5412-RA 87..923 17..855 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:04 Download gff for BO06246.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20577139..20577586 17..464 100 -> Plus
3R 20577646..20578034 465..855 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:47 Download gff for BO06246.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16402861..16403308 17..464 100 -> Plus
arm_3R 16403368..16403756 465..855 99   Plus

BO06246.pep Sequence

Translation from 16 to 871

> BO06246.pep
MTNNDAAVEAAGSSRASSSKQQLKLEITEKVRVLCLHGYRQNGEAFKNKL
GSFRKFANKYAEFVFITAPHVAKALESAAEPVPEQRSWWANKDDGSFKGT
NKGGPAFGFQESLRCVEEAWRTQGPFQGLLGFSQGACFVGLICGLAKKKL
TSIRPEFAVLASGFLSGSLVHMSAYEEAISIPTLHIYGQTDEIIPKEMSE
SLAARFKNAEVLEHSGGHYFPATAQQKQTFINFFQDRLQEYLEHEELQQS
GNASFVDSGAEDDNDAEVAAMTAELDESDASFLDH

BO06246.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG5412-PA 279 CG5412-PA 1..279 1..279 1441 100 Plus