Clone Sequence Records
BO06246.3prime Sequence
869 bp (819 high quality bases) assembled on 2005-12-03
> BO06246.3prime
ATGGTCTAGAAAGCTTGCATCACTCTCGTCCAGCTCGGCCGTCATGGCCG
CCACCTCGGCATCGTTGTCGTCCTCCGCTCCGCTATCCACGAATGAGGCA
TTGCCGCTCTGCTGCAACTCCTCGTGCTCCAGGTACTCCTGCAGCCGATC
CTGGAAGAAGTTGATGAATGTCTGCTTCTGCTGCGCCGTGGCCGGGAAGT
AGTGTCCGCCGCTGTGCTCCAGCACCTCGGCGTTCTTGAAGCGCGCAGCC
AGGGACTCGCTCATCTCCTTGGGAATGATCTCATCCGTCTGTCCGTAGAT
GTGCAACGTGGGTATGCTGATGGCCTCTTCGTAGGCGCTCATGTGCACCA
GACTGCCAGACAAGAAGCCCGAGGCTAGCACAGCAAACTCCGGACGGATG
GAGGTCAACTTCTTTTTGGCCAGGCCGCATATAAGACCCACGAAACAGGC
GCCCTGTGAGAAGCCTAGCAGTCCCTGGAAAGGGCCCTGCGTCCGCCACG
CCTCCTCAACGCAGCGCAGGCTCTCCTGAAAGCCGAAGGCGGGACCACCT
TTGTTTGTTCCCTTGAAGGAGCCATCGTCCTTGTTGGCCCACCAACTCCT
CTGCTCCGGCACAGGCTCCGCCGCCGACTCCAGTGCCTTGGCCACGTGCG
GCGCCGTGATGAACACGAACTCTGCGTACTTGTTGGCGAACTTGCGGAAG
GAGCCCAGCTTGTTTTTGAAGGCTTCTCCATTCTGGCGGTAACCGTGCAG
GCACAGGACTCGCACCTTCTCGGTGATTTCCAGCTTCAGCTGCTGTTTGC
TGCTGCTGGCCCGACTGGAGCCGGCTGCCTCCACGGCCGCATCGTTGTTG
GTCATGTCGACTGATAACT
BO06246.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-PA | 840 | CG5412-RA | 1..837 | 855..19 | 4185 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-RA | 1020 | CG5412-RA | 87..923 | 855..19 | 4185 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20577139..20577586 | 855..408 | 2240 | 100 | Minus |
3R | 32079331 | 3R | 20577646..20578034 | 407..19 | 1945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:55:35 has no hits.
BO06246.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:09 Download gff for
BO06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-PA | 1..840 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:51 Download gff for
BO06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-PA | 1..840 | 18..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:03 Download gff for
BO06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..927 | 13..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 17:39:00 Download gff for
BO06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..927 | 13..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 17:39:00 Download gff for
BO06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20577139..20577586 | 408..855 | 100 | -> | Minus |
3R | 20577646..20578038 | 13..407 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:03 Download gff for
BO06246.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16402861..16403308 | 408..855 | 100 | -> | Minus |
arm_3R | 16403368..16403760 | 13..407 | 99 | | Minus |
BO06246.5prime Sequence
852 bp (800 high quality bases) assembled on 2005-12-03
> BO06246.5prime
GAAGTTATCAGTCGACATGACCAACAACGATGCGGCCGTGGAGGCAGCCG
GCTCCAGTCGGGCCAGCAGCAGCAAACAGCAGCTGAAGCTGGAAATCACC
GAGAAGGTGCGAGTCCTGTGCCTGCACGGTTACCGCCAGAATGGAGAAGC
CTTCAAAAACAAGCTGGGCTCCTTCCGCAAGTTCGCCAACAAGTACGCAG
AGTTCGTGTTCATCACGGCGCCGCACGTGGCCAAGGCACTGGAGTCGGCG
GCGGAGCCTGTGCCGGAGCAGAGGAGTTGGTGGGCCAACAAGGACGATGG
CTCCTTCAAGGGAACAAACAAAGGTGGTCCCGCCTTCGGCTTTCAGGAGA
GCCTGCGCTGCGTTGAGGAGGCGTGGCGGACGCAGGGCCCTTTCCAGGGA
CTGCTAGGCTTCTCACAGGGCGCCTGTTTCGTGGGTCTTATATGCGGCCT
GGCCAAAAAGAAGTTGACCTCCATCCGTCCGGAGTTTGCTGTGCTAGCCT
CGGGCTTCTTGTCTGGCAGTCTGGTGCACATGAGCGCCTACGAAGAGGCC
ATCAGCATACCCACGTTGCACATCTACGGACAGACGGATGAGATCATTCC
CAAGGAGATGAGCGAGTCCCTGGCTGCGCGCTTCAAGAACGCCGAGGTGC
TGGAGCACAGCGGCGGACACTACTTCCCGGCCACGGCGCAGCAGAAGCAG
ACATTCATCAACTTCTTCCAGGATCGGCTGCAGGAGTACCTGGAGCACGA
GGAGTTGCAGCAGAGCGGCAATGCCTCATTCGTGGATAGCGGAGCGGAGG
ACGACAACGATGCCGAGGTGGCGGCCATGACGGCCGAGCTGGACGAGAGT
GA
BO06246.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-PA | 840 | CG5412-RA | 1..836 | 17..852 | 4180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:35:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-RA | 1020 | CG5412-RA | 87..922 | 17..852 | 4180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:35:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20577139..20577586 | 17..464 | 2240 | 100 | Plus |
3R | 32079331 | 3R | 20577646..20578033 | 465..852 | 1940 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:35:36 has no hits.
BO06246.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:10 Download gff for
BO06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:52 Download gff for
BO06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-PA | 1..835 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:18 Download gff for
BO06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..921 | 17..851 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:10:12 Download gff for
BO06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..921 | 17..851 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:10:12 Download gff for
BO06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20577139..20577586 | 17..464 | 100 | -> | Plus |
3R | 20577646..20578032 | 465..851 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:18 Download gff for
BO06246.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16402861..16403308 | 17..464 | 100 | -> | Plus |
arm_3R | 16403368..16403754 | 465..851 | 100 | | Plus |
BO06246.complete Sequence
871 bp (871 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630313
> BO06246.complete
GAAGTTATCAGTCGACATGACCAACAACGATGCGGCCGTGGAGGCAGCCG
GCTCCAGTCGGGCCAGCAGCAGCAAACAGCAGCTGAAGCTGGAAATCACC
GAGAAGGTGCGAGTCCTGTGCCTGCACGGTTACCGCCAGAATGGAGAAGC
CTTCAAAAACAAGCTGGGCTCCTTCCGCAAGTTCGCCAACAAGTACGCAG
AGTTCGTGTTCATCACGGCGCCGCACGTGGCCAAGGCACTGGAGTCGGCG
GCGGAGCCTGTGCCGGAGCAGAGGAGTTGGTGGGCCAACAAGGACGATGG
CTCCTTCAAGGGAACAAACAAAGGTGGTCCCGCCTTCGGCTTTCAGGAGA
GCCTGCGCTGCGTTGAGGAGGCGTGGCGGACGCAGGGCCCTTTCCAGGGA
CTGCTAGGCTTCTCACAGGGCGCCTGTTTCGTGGGTCTTATATGCGGCCT
GGCCAAAAAGAAGTTGACCTCCATCCGTCCGGAGTTTGCTGTGCTAGCCT
CGGGCTTCTTGTCTGGCAGTCTGGTGCACATGAGCGCCTACGAAGAGGCC
ATCAGCATACCCACGTTGCACATCTACGGACAGACGGATGAGATCATTCC
CAAGGAGATGAGCGAGTCCCTGGCTGCGCGCTTCAAGAACGCCGAGGTGC
TGGAGCACAGCGGCGGACACTACTTCCCGGCCACGGCGCAGCAGAAGCAG
ACATTCATCAACTTCTTCCAGGATCGGCTGCAGGAGTACCTGGAGCACGA
GGAGTTGCAGCAGAGCGGCAATGCCTCATTCGTGGATAGCGGAGCGGAGG
ACGACAACGATGCCGAGGTGGCGGCCATGACGGCCGAGCTGGACGAGAGT
GATGCAAGCTTTCTAGACCAT
BO06246.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 23:47:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-RA | 840 | CG5412-PA | 1..837 | 17..853 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 23:47:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-RA | 1020 | CG5412-RA | 87..923 | 17..853 | 4185 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 23:47:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20577139..20577586 | 17..464 | 2240 | 100 | Plus |
3R | 32079331 | 3R | 20577646..20578034 | 465..853 | 1945 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 23:47:01 has no hits.
BO06246.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:08 Download gff for
BO06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 1..840 | 17..854 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:44 Download gff for
BO06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 132..972 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:37:47 Download gff for
BO06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..923 | 17..855 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:09 Download gff for
BO06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 132..972 | 17..859 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:08:04 Download gff for
BO06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5412-RA | 87..923 | 17..855 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:04 Download gff for
BO06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20577139..20577586 | 17..464 | 100 | -> | Plus |
3R | 20577646..20578034 | 465..855 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:37:47 Download gff for
BO06246.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16402861..16403308 | 17..464 | 100 | -> | Plus |
arm_3R | 16403368..16403756 | 465..855 | 99 | | Plus |
BO06246.pep Sequence
Translation from 16 to 871
> BO06246.pep
MTNNDAAVEAAGSSRASSSKQQLKLEITEKVRVLCLHGYRQNGEAFKNKL
GSFRKFANKYAEFVFITAPHVAKALESAAEPVPEQRSWWANKDDGSFKGT
NKGGPAFGFQESLRCVEEAWRTQGPFQGLLGFSQGACFVGLICGLAKKKL
TSIRPEFAVLASGFLSGSLVHMSAYEEAISIPTLHIYGQTDEIIPKEMSE
SLAARFKNAEVLEHSGGHYFPATAQQKQTFINFFQDRLQEYLEHEELQQS
GNASFVDSGAEDDNDAEVAAMTAELDESDASFLDH
BO06246.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5412-PA | 279 | CG5412-PA | 1..279 | 1..279 | 1441 | 100 | Plus |