Clone Sequence Records
BO06247.3prime Sequence
668 bp (526 high quality bases) assembled on 2005-12-03
> BO06247.3prime
ATGGTCTAGAAAGCTTGCAAGAATATGTTTGAAAATATTGTCCAGTCTTC
TTGGAAATCGGTGCTGGCTGTTGCCACTGCTGTTTTCAACGGAACTAAAA
TGCGCAACTGTCGATGGAGATCTCGTTGTTGAGGAGGTGGAAGACGATGA
GGTGGTGGTTGAAGGAGATGGGGTCGTGGTGGTAGTAGTGGGGTTGGCGG
CGGTGGTGCTGGTGCTGGAGCTGGAGCTGGAACTGGTAGTGGTGGTGCTT
CTTTCCGGCACAGGATTCTCACCGCTCAGGCACTTCTGAAGATCTTCGTA
GGACTCGCCGGAGCGGATCTCATAGTTCCTGGACGTTGCAGAACAGCATT
GGTCACGGGTGAACACCAGTGTTTCGACCTGCTGACGCAGTGAACTGACC
GAGACCGAAGCATTGGCTGCCACATTCGACAACTGCTTGGAATATGTCGG
ACCCTCAGTGGAGTAGCAGGATAGAGCATTTTCGCTGTTATTCTGTTTAT
CGCAGTCCAGCAGGAACATGCAGGATTCTAAGGTGGAATTGCTGAGGTCC
CAGACAACGGAATTGTACTGTTCCAGAACCTGTTCATAACCGCCATCATA
CTTATCGACAGCACAAATTGTACTCATCCACATACTCCTCATACTCGGTT
TTGAATACGTCATTATAG
BO06247.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-PA | 816 | CG10912-RA | 223..813 | 609..19 | 2930 | 99.8 | Minus |
CG10912-PA | 816 | CG10912-RA | 165..222 | 668..611 | 240 | 96.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-RA | 910 | CG10912-RA | 201..849 | 668..19 | 3180 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18056125..18056561 | 19..455 | 2185 | 100 | Plus |
2R | 25286936 | 2R | 18056651..18056865 | 453..668 | 985 | 98.1 | Plus |
Blast to na_te.dros performed on 2015-02-12 01:28:32 has no hits.
BO06247.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:11 Download gff for
BO06247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-PA | 165..816 | 15..668 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:53 Download gff for
BO06247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-PA | 165..816 | 15..668 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:29 Download gff for
BO06247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 201..857 | 10..668 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:48:58 Download gff for
BO06247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 201..857 | 10..668 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:48:58 Download gff for
BO06247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18056117..18056559 | 10..453 | 99 | <- | Plus |
2R | 18056652..18056865 | 454..668 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:29 Download gff for
BO06247.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13943622..13944064 | 10..453 | 99 | <- | Plus |
arm_2R | 13944157..13944370 | 454..668 | 98 | | Plus |
BO06247.5prime Sequence
845 bp (788 high quality bases) assembled on 2005-12-03
> BO06247.5prime
GAAGTTATCAGTCGACATGCAGTCACATCTCATCGCCATCCTGCTGGCCA
CCGTGGCCATTGGCTCCTGCATCGCGAATCCCAACCTCATCTCTGGTCCT
TCGCGAATTCTTGAGATAATGAGCGCCACCAGTGATATCCAGCGTAATAA
TCCACAACTGACCGTAGAATGTTTTGACTACTATAATGACGTATTCAAAA
CCGAGTATGCGGAGTATGTGGATGAGTACAATCTGTGCGTCGATAAGTAT
GATGGCGGTTATGAACAGGTTCTGGAACAGTACAATTCCGTTGTCTGGGA
CCTCAGCAATTCCACCTTCGAATCCTGCATGTTCCTGCTGGACTGCGATA
AACAGAATAACAGCGAAAATGCTCTATCCTGCTACTCCACTGAGGGTCCG
ACATATTCCAAGCAGTTGTCGAATGTGGCAGCCAATGCTTCGGTCTCGGT
CAGTTCACTGCGTCAGCAGGTCGAAACACTGGTGTTCACCCGTGACCAAT
GCTGTTCTGCAACGTCCAGGAACTATGAGATCCGCTCCGGCGAGTCCTAC
GAAGATCTTCAGAAGTGCCTGAGCGGTGAGAATCCTGTGCCGGAAAGAAG
CACCACCACTACCAGTTCCAGCTCCAGCTCCAGCACCAGCACCACCGCCG
CCAACCCCACTACTACCACCACGACCCCATCTCCTTCAACCACCACCTCA
TCGTCTTCCACCTCCTCAACAACGAGATCTCCATCGACAGTTGCGCATTT
TAGTTCCGTTGAAAACAGCAGTGGCAACAGCCAGCACCGATTTCCAAGAA
GACTGGACAATATTTTCAAACATATTCTTGCAAGCTTTCTAGACC
BO06247.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-PA | 816 | CG10912-RA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-RA | 910 | CG10912-RA | 35..849 | 15..829 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18056125..18056561 | 829..393 | 2185 | 100 | Minus |
2R | 25286936 | 2R | 18056651..18057031 | 395..15 | 1905 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:55:47 has no hits.
BO06247.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:12 Download gff for
BO06247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-PA | 1..816 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:55 Download gff for
BO06247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-PA | 1..816 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:05 Download gff for
BO06247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 31..857 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:17:04 Download gff for
BO06247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 31..857 | 10..838 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:17:04 Download gff for
BO06247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18056652..18057035 | 10..394 | 99 | | Minus |
2R | 18056117..18056559 | 395..838 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:05 Download gff for
BO06247.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13943622..13944064 | 395..838 | 99 | <- | Minus |
arm_2R | 13944157..13944540 | 10..394 | 99 | | Minus |
BO06247.complete Sequence
847 bp (847 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630314
> BO06247.complete
GAAGTTATCAGTCGACATGCAGTCACATCTCATCGCCATCCTGCTGGCCA
CCGTGGCCATTGGCTCCTGCATCGCGAATCCCAACCTCATCTCTGGTCCT
TCGCGAATTCTTGAGATAATGAGCGCCACCAGTGATATCCAGCGTAATAA
TCCACAACTGACCGTAGAATGTTTTGACTACTATAATGACGTATTCAAAA
CCGAGTATGCGGAGTATGTGGATGAGTACAATCTGTGCGTCGATAAGTAT
GATGGCGGTTATGAACAGGTTCTGGAACAGTACAATTCCGTTGTCTGGGA
CCTCAGCAATTCCACCTTCGAATCCTGCATGTTCCTGCTGGACTGCGATA
AACAGAATAACAGCGAAAATGCTCTATCCTGCTACTCCACTGAGGGTCCG
ACATATTCCAAGCAGTTGTCGAATGTGGCAGCCAATGCTTCGGTCTCGGT
CAGTTCACTGCGTCAGCAGGTCGAAACACTGGTGTTCACCCGTGACCAAT
GCTGTTCTGCAACGTCCAGGAACTATGAGATCCGCTCCGGCGAGTCCTAC
GAAGATCTTCAGAAGTGCCTGAGCGGTGAGAATCCTGTGCCGGAAAGAAG
CACCACCACTACCAGTTCCAGCTCCAGCTCCAGCACCAGCACCACCGCCG
CCAACCCCACTACTACCACCACGACCCCATCTCCTTCAACCACCACCTCA
TCGTCTTCCACCTCCTCAACAACGAGATCTCCATCGACAGTTGCGCATTT
TAGTTCCGTTGAAAACAGCAGTGGCAACAGCCAGCACCGATTTCCAAGAA
GACTGGACAATATTTTCAAACATATTCTTGCAAGCTTTCTAGACCAT
BO06247.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-RA | 816 | CG10912-PA | 1..813 | 17..829 | 4065 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-RA | 910 | CG10912-RA | 35..849 | 15..829 | 4075 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 18056125..18056561 | 829..393 | 2185 | 100 | Minus |
2R | 25286936 | 2R | 18056651..18057031 | 395..15 | 1905 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:49:43 has no hits.
BO06247.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:10 Download gff for
BO06247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 1..816 | 17..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:47 Download gff for
BO06247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 25..851 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:44 Download gff for
BO06247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 37..849 | 17..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:10 Download gff for
BO06247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 25..851 | 10..838 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:39 Download gff for
BO06247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10912-RA | 37..849 | 17..831 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:39 Download gff for
BO06247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 18056123..18056559 | 395..831 | 99 | <- | Minus |
2R | 18056652..18057029 | 17..394 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:44 Download gff for
BO06247.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 13943628..13944064 | 395..831 | 99 | <- | Minus |
arm_2R | 13944157..13944534 | 17..394 | 100 | | Minus |
BO06247.pep Sequence
Translation from 16 to 847
> BO06247.pep
MQSHLIAILLATVAIGSCIANPNLISGPSRILEIMSATSDIQRNNPQLTV
ECFDYYNDVFKTEYAEYVDEYNLCVDKYDGGYEQVLEQYNSVVWDLSNST
FESCMFLLDCDKQNNSENALSCYSTEGPTYSKQLSNVAANASVSVSSLRQ
QVETLVFTRDQCCSATSRNYEIRSGESYEDLQKCLSGENPVPERSTTTTS
SSSSSSTSTTAANPTTTTTTPSPSTTTSSSSTSSTTRSPSTVAHFSSVEN
SSGNSQHRFPRRLDNIFKHILASFLDH
BO06247.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10912-PA | 271 | CG10912-PA | 1..271 | 1..271 | 1394 | 100 | Plus |
CG10911-PA | 359 | CG10911-PA | 5..257 | 5..255 | 273 | 30.2 | Plus |
CG31041-PA | 198 | CG31041-PA | 1..188 | 1..189 | 236 | 28.4 | Plus |
CG7567-PA | 211 | CG7567-PA | 7..203 | 5..196 | 229 | 28.3 | Plus |
CG16762-PA | 254 | CG16762-PA | 16..239 | 5..223 | 193 | 25.9 | Plus |