Clone BO06247 Report

Search the DGRC for BO06247

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:47
Vector:pDNR-Dual
Associated Gene/TranscriptCG10912-RA
Protein status:BO06247.pep: validated full length
Sequenced Size:847

Clone Sequence Records

BO06247.3prime Sequence

668 bp (526 high quality bases) assembled on 2005-12-03

> BO06247.3prime
ATGGTCTAGAAAGCTTGCAAGAATATGTTTGAAAATATTGTCCAGTCTTC
TTGGAAATCGGTGCTGGCTGTTGCCACTGCTGTTTTCAACGGAACTAAAA
TGCGCAACTGTCGATGGAGATCTCGTTGTTGAGGAGGTGGAAGACGATGA
GGTGGTGGTTGAAGGAGATGGGGTCGTGGTGGTAGTAGTGGGGTTGGCGG
CGGTGGTGCTGGTGCTGGAGCTGGAGCTGGAACTGGTAGTGGTGGTGCTT
CTTTCCGGCACAGGATTCTCACCGCTCAGGCACTTCTGAAGATCTTCGTA
GGACTCGCCGGAGCGGATCTCATAGTTCCTGGACGTTGCAGAACAGCATT
GGTCACGGGTGAACACCAGTGTTTCGACCTGCTGACGCAGTGAACTGACC
GAGACCGAAGCATTGGCTGCCACATTCGACAACTGCTTGGAATATGTCGG
ACCCTCAGTGGAGTAGCAGGATAGAGCATTTTCGCTGTTATTCTGTTTAT
CGCAGTCCAGCAGGAACATGCAGGATTCTAAGGTGGAATTGCTGAGGTCC
CAGACAACGGAATTGTACTGTTCCAGAACCTGTTCATAACCGCCATCATA
CTTATCGACAGCACAAATTGTACTCATCCACATACTCCTCATACTCGGTT
TTGAATACGTCATTATAG

BO06247.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-PA 816 CG10912-RA 223..813 609..19 2930 99.8 Minus
CG10912-PA 816 CG10912-RA 165..222 668..611 240 96.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:34
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-RA 910 CG10912-RA 201..849 668..19 3180 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18056125..18056561 19..455 2185 100 Plus
2R 25286936 2R 18056651..18056865 453..668 985 98.1 Plus
Blast to na_te.dros performed on 2015-02-12 01:28:32 has no hits.

BO06247.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:11 Download gff for BO06247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-PA 165..816 15..668 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:53 Download gff for BO06247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-PA 165..816 15..668 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:29 Download gff for BO06247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 201..857 10..668 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:48:58 Download gff for BO06247.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 201..857 10..668 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:48:58 Download gff for BO06247.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 18056117..18056559 10..453 99 <- Plus
2R 18056652..18056865 454..668 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:29 Download gff for BO06247.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13943622..13944064 10..453 99 <- Plus
arm_2R 13944157..13944370 454..668 98   Plus

BO06247.5prime Sequence

845 bp (788 high quality bases) assembled on 2005-12-03

> BO06247.5prime
GAAGTTATCAGTCGACATGCAGTCACATCTCATCGCCATCCTGCTGGCCA
CCGTGGCCATTGGCTCCTGCATCGCGAATCCCAACCTCATCTCTGGTCCT
TCGCGAATTCTTGAGATAATGAGCGCCACCAGTGATATCCAGCGTAATAA
TCCACAACTGACCGTAGAATGTTTTGACTACTATAATGACGTATTCAAAA
CCGAGTATGCGGAGTATGTGGATGAGTACAATCTGTGCGTCGATAAGTAT
GATGGCGGTTATGAACAGGTTCTGGAACAGTACAATTCCGTTGTCTGGGA
CCTCAGCAATTCCACCTTCGAATCCTGCATGTTCCTGCTGGACTGCGATA
AACAGAATAACAGCGAAAATGCTCTATCCTGCTACTCCACTGAGGGTCCG
ACATATTCCAAGCAGTTGTCGAATGTGGCAGCCAATGCTTCGGTCTCGGT
CAGTTCACTGCGTCAGCAGGTCGAAACACTGGTGTTCACCCGTGACCAAT
GCTGTTCTGCAACGTCCAGGAACTATGAGATCCGCTCCGGCGAGTCCTAC
GAAGATCTTCAGAAGTGCCTGAGCGGTGAGAATCCTGTGCCGGAAAGAAG
CACCACCACTACCAGTTCCAGCTCCAGCTCCAGCACCAGCACCACCGCCG
CCAACCCCACTACTACCACCACGACCCCATCTCCTTCAACCACCACCTCA
TCGTCTTCCACCTCCTCAACAACGAGATCTCCATCGACAGTTGCGCATTT
TAGTTCCGTTGAAAACAGCAGTGGCAACAGCCAGCACCGATTTCCAAGAA
GACTGGACAATATTTTCAAACATATTCTTGCAAGCTTTCTAGACC

BO06247.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-PA 816 CG10912-RA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:55:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-RA 910 CG10912-RA 35..849 15..829 4075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:45
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18056125..18056561 829..393 2185 100 Minus
2R 25286936 2R 18056651..18057031 395..15 1905 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:55:47 has no hits.

BO06247.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:12 Download gff for BO06247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-PA 1..816 17..833 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:55 Download gff for BO06247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-PA 1..816 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:05 Download gff for BO06247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 31..857 10..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:17:04 Download gff for BO06247.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 31..857 10..838 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:17:04 Download gff for BO06247.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 18056652..18057035 10..394 99   Minus
2R 18056117..18056559 395..838 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:05 Download gff for BO06247.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13943622..13944064 395..838 99 <- Minus
arm_2R 13944157..13944540 10..394 99   Minus

BO06247.complete Sequence

847 bp (847 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630314

> BO06247.complete
GAAGTTATCAGTCGACATGCAGTCACATCTCATCGCCATCCTGCTGGCCA
CCGTGGCCATTGGCTCCTGCATCGCGAATCCCAACCTCATCTCTGGTCCT
TCGCGAATTCTTGAGATAATGAGCGCCACCAGTGATATCCAGCGTAATAA
TCCACAACTGACCGTAGAATGTTTTGACTACTATAATGACGTATTCAAAA
CCGAGTATGCGGAGTATGTGGATGAGTACAATCTGTGCGTCGATAAGTAT
GATGGCGGTTATGAACAGGTTCTGGAACAGTACAATTCCGTTGTCTGGGA
CCTCAGCAATTCCACCTTCGAATCCTGCATGTTCCTGCTGGACTGCGATA
AACAGAATAACAGCGAAAATGCTCTATCCTGCTACTCCACTGAGGGTCCG
ACATATTCCAAGCAGTTGTCGAATGTGGCAGCCAATGCTTCGGTCTCGGT
CAGTTCACTGCGTCAGCAGGTCGAAACACTGGTGTTCACCCGTGACCAAT
GCTGTTCTGCAACGTCCAGGAACTATGAGATCCGCTCCGGCGAGTCCTAC
GAAGATCTTCAGAAGTGCCTGAGCGGTGAGAATCCTGTGCCGGAAAGAAG
CACCACCACTACCAGTTCCAGCTCCAGCTCCAGCACCAGCACCACCGCCG
CCAACCCCACTACTACCACCACGACCCCATCTCCTTCAACCACCACCTCA
TCGTCTTCCACCTCCTCAACAACGAGATCTCCATCGACAGTTGCGCATTT
TAGTTCCGTTGAAAACAGCAGTGGCAACAGCCAGCACCGATTTCCAAGAA
GACTGGACAATATTTTCAAACATATTCTTGCAAGCTTTCTAGACCAT

BO06247.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:49:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-RA 816 CG10912-PA 1..813 17..829 4065 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:49:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-RA 910 CG10912-RA 35..849 15..829 4075 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:49:42
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 18056125..18056561 829..393 2185 100 Minus
2R 25286936 2R 18056651..18057031 395..15 1905 100 Minus
Blast to na_te.dros performed on 2014-11-27 14:49:43 has no hits.

BO06247.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:10 Download gff for BO06247.complete
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 1..816 17..833 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:47 Download gff for BO06247.complete
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 25..851 10..838 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:45:44 Download gff for BO06247.complete
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 37..849 17..831 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:10 Download gff for BO06247.complete
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 25..851 10..838 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:53:39 Download gff for BO06247.complete
Subject Subject Range Query Range Percent Splice Strand
CG10912-RA 37..849 17..831 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:53:39 Download gff for BO06247.complete
Subject Subject Range Query Range Percent Splice Strand
2R 18056123..18056559 395..831 99 <- Minus
2R 18056652..18057029 17..394 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:45:44 Download gff for BO06247.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13943628..13944064 395..831 99 <- Minus
arm_2R 13944157..13944534 17..394 100   Minus

BO06247.pep Sequence

Translation from 16 to 847

> BO06247.pep
MQSHLIAILLATVAIGSCIANPNLISGPSRILEIMSATSDIQRNNPQLTV
ECFDYYNDVFKTEYAEYVDEYNLCVDKYDGGYEQVLEQYNSVVWDLSNST
FESCMFLLDCDKQNNSENALSCYSTEGPTYSKQLSNVAANASVSVSSLRQ
QVETLVFTRDQCCSATSRNYEIRSGESYEDLQKCLSGENPVPERSTTTTS
SSSSSSTSTTAANPTTTTTTPSPSTTTSSSSTSSTTRSPSTVAHFSSVEN
SSGNSQHRFPRRLDNIFKHILASFLDH

BO06247.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG10912-PA 271 CG10912-PA 1..271 1..271 1394 100 Plus
CG10911-PA 359 CG10911-PA 5..257 5..255 273 30.2 Plus
CG31041-PA 198 CG31041-PA 1..188 1..189 236 28.4 Plus
CG7567-PA 211 CG7567-PA 7..203 5..196 229 28.3 Plus
CG16762-PA 254 CG16762-PA 16..239 5..223 193 25.9 Plus