Clone Sequence Records
BO06248.3prime Sequence
875 bp (809 high quality bases) assembled on 2005-12-03
> BO06248.3prime
ATGGTCTAGAAAGCTTGCTCCACCCTTGGGCTTGGCCAACTCGATGAGGC
GTGGCGAGGCTTTGGCCTTCAGAGCCGCCGGCGATATGGCAAACGGATTC
TCCCGGATATGCGTGTTCTCGAACTCCTTGGGCTCCGCCAGCTCCTTGAT
CCGCGTGCTCGCCTTGTATTTGAGCGCGTTTGGCGCGATACCGAATGGAT
TCTCCTTGACATCCGCCAGTCCTTGGTTGGCATCGCGCGTGGTAAGTGGC
TCGGACATCTCCTTGATGCGGGCACTCGGCTTGTAGCGAAGGGCATTGGG
CGAGACCTTCTCCGGATTCTCGTTGATGTGGACATTATCGCGCACGACGG
GCTGCGATATTTGCTTGATCCGCTTGGTCGCCTTGTAGTCCTTCATCTGG
GAGGTCAGCTCCCACTTGGGTTTGATCTCCTCCAAATAGGCCTTGGGACT
GGCCAGCTGATTGAGACGCACGGGATCGAACTCCCCAGCTCCACGATCCG
GTTTCGGGACCTTTGGTGCTTTCTTTGGTTTCGCCAACTTTTCGATGTAC
TTCTCGTGCTTAGCCAGCTGCTTCTCCGTCTTCTTCTTCTTTTTCTTCGG
CTTAACCAACGGCTGGATATTCGTGAGACGACTGTACAGCGATAGATAGC
TGTAGCGAAGCCATCTGTTCAGTATGGACTCCCCAATTGAGTCGCCCGCC
AGAATGGCCGTTCGCCGCCTGTGAAGCAATCGACGGACCGTGGGCAGAGC
TAGTTGCTCGGTGCGTGTGTGATTCTGGGCGTCACATGGTCGCACCATCT
CGATGGACTTGGGAAATGAGCAGGCGCATTTCGGCACAAAGCGGCAGGTG
CGTCGCCTGGGTATGGCCATTTCAT
BO06248.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-PA | 1062 | CG6332-RA | 205..1059 | 873..19 | 4275 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:06:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-RA | 1316 | CG6332-RA | 336..1190 | 873..19 | 4275 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:06:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22015032..22015307 | 873..598 | 1380 | 100 | Minus |
3R | 32079331 | 3R | 22015827..22016086 | 278..19 | 1300 | 100 | Minus |
3R | 32079331 | 3R | 22015540..22015760 | 499..279 | 1105 | 100 | Minus |
3R | 32079331 | 3R | 22015380..22015480 | 598..498 | 505 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 12:06:24 has no hits.
BO06248.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:13 Download gff for
BO06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-PA | 202..1062 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:56 Download gff for
BO06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-PA | 202..1062 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:49 Download gff for
BO06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 333..1193 | 15..875 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:34 Download gff for
BO06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 333..1193 | 15..875 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:34 Download gff for
BO06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22015029..22015306 | 599..875 | 99 | -> | Minus |
3R | 22015380..22015479 | 499..598 | 100 | -> | Minus |
3R | 22015541..22015760 | 279..498 | 100 | -> | Minus |
3R | 22015827..22016089 | 15..278 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:49 Download gff for
BO06248.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17840751..17841028 | 599..875 | 99 | -> | Minus |
arm_3R | 17841102..17841201 | 499..598 | 100 | -> | Minus |
arm_3R | 17841263..17841482 | 279..498 | 100 | -> | Minus |
arm_3R | 17841549..17841811 | 15..278 | 99 | | Minus |
BO06248.5prime Sequence
840 bp (739 high quality bases) assembled on 2005-12-03
> BO06248.5prime
GAAGTTATCAGTCGACATGACCATCCAAGGACTGAAGTGTGACCTCAGCC
CGACGGTGACCACTTGTCTGCAGCTGAAGGACTGCGTCCGTCCGGACTGC
TGTCCCATCCGGGACCCCATTCCCTACGATGCCGAGTGCTTCGTTAGGGA
CATTGGCCAGGAGCTGGACAAACTGACGCGCCGACACGAGCGCATGTTCG
TCAAGCGGCGGCGTCTGATGGAAATGGCCATACCCAGGCGACGCACCTGC
CGCTTTGTGCCGAAATGCGCCTGCTCATTTCCCAAGTCCATCGAGATGGT
GCGACCATGTGACGCCCAGAATCACACACGCACCGAGCAACTAGCTCTGC
CCACGGTCCGTCGATTGCTTCACAGGCGGCGAACGGCCATTCTGGCGGGC
GACTCAATTGGGGAGTCCATACTGAACAGATGGCTTCGCTACAGCTATCT
ATCGCTGTACAGTCGTCTCACGAATATCCAGCCGTTGGTTAAGCCGAAGA
AAAAGAAGAAGAAGACGGAGAAGCAGCTGGCTAAGCACGAGAAGTACATC
GAAAAGTTGGCGAAACCAAAGAAAGCACCAAAGGTCCCGAAACCGGATCG
TGGAGCTGGGGAGTTCGATCCCGTGCGTCTCAATCAGCTGGCCAGTCCCA
AGGCCTATTTGGAGGAGATCAAACCCAAGTGGGAGCTGACCTCCCAGATG
AAGGACTACAAGGCGACCAAGCGGATCAAGCAAATATCGCAGCCCGTCGT
GCGCGATAATGTCCACATCAACGAGAATCCGGAGAAGGTCTCGCCCAATG
CCCTTCGCTAACAGCCGAGTGCCCGCATCAAGGAGATGTC
BO06248.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-PA | 1062 | CG6332-RA | 1..824 | 17..840 | 4070 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-RA | 1316 | CG6332-RA | 132..955 | 17..840 | 4090 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22014828..22015307 | 17..496 | 2400 | 100 | Plus |
3R | 32079331 | 3R | 22015540..22015755 | 595..810 | 1080 | 100 | Plus |
3R | 32079331 | 3R | 22015380..22015480 | 496..596 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:55:58 has no hits.
BO06248.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:14 Download gff for
BO06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-PA | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:58 Download gff for
BO06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-PA | 1..824 | 17..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:07 Download gff for
BO06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 126..955 | 9..840 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:18:00 Download gff for
BO06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 126..955 | 9..840 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:18:00 Download gff for
BO06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22014822..22015306 | 9..495 | 99 | -> | Plus |
3R | 22015380..22015479 | 496..595 | 100 | -> | Plus |
3R | 22015541..22015760 | 596..815 | 99 | -> | Plus |
3R | 22015827..22015851 | 816..840 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:07 Download gff for
BO06248.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17840544..17841028 | 9..495 | 99 | -> | Plus |
arm_3R | 17841102..17841201 | 496..595 | 100 | -> | Plus |
arm_3R | 17841263..17841482 | 596..815 | 99 | -> | Plus |
arm_3R | 17841549..17841573 | 816..840 | 100 | | Plus |
BO06248.complete Sequence
1093 bp (1093 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630315
> BO06248.complete
GAAGTTATCAGTCGACATGACCATCCAAGGACTGAAGTGTGACCTCAGCC
CGACGGTGACCACTTGTCTGCAGCTGAAGGACTGCGTCCGTCCGGACTGC
TGTCCCATCCGGGACCCCATTCCCTACGATGCCGAGTGCTTCGTTAGGGA
CATTGGCCAGGAGCTGGACAAACTGACGCGCCGACACGAGCGCATGTTCG
TCAAGCGGCGGCGTCTGATGGAAATGGCCATACCCAGGCGACGCACCTGC
CGCTTTGTGCCGAAATGCGCCTGCTCATTTCCCAAGTCCATCGAGATGGT
GCGACCATGTGACGCCCAGAATCACACACGCACCGAGCAACTAGCTCTGC
CCACGGTCCGTCGATTGCTTCACAGGCGGCGAACGGCCATTCTGGCGGGC
GACTCAATTGGGGAGTCCATACTGAACAGATGGCTTCGCTACAGCTATCT
ATCGCTGTACAGTCGTCTCACGAATATCCAGCCGTTGGTTAAGCCGAAGA
AAAAGAAGAAGAAGACGGAGAAGCAGCTGGCTAAGCACGAGAAGTACATC
GAAAAGTTGGCGAAACCAAAGAAAGCACCAAAGGTCCCGAAACCGGATCG
TGGAGCTGGGGAGTTCGATCCCGTGCGTCTCAATCAGCTGGCCAGTCCCA
AGGCCTATTTGGAGGAGATCAAACCCAAGTGGGAGCTGACCTCCCAGATG
AAGGACTACAAGGCGACCAAGCGGATCAAGCAAATATCGCAGCCCGTCGT
GCGCGATAATGTCCACATCAACGAGAATCCGGAGAAGGTCTCGCCCAATG
CCCTTCGCTACAAGCCGAGTGCCCGCATCAAGGAGATGTCCGAGCCACTT
ACCACGCGCGATGCCAACCAAGGACTGGCGGATGTCAAGGAGAATCCATT
CGGTATCGCGCCAAACGCGCTCAAATACAAGGCGAGCACGCGGATCAAGG
AGCTGGCGGAGCCCAAGGAGTTCGAGAACACGCATATCCGGGAGAATCCG
TTTGCCATATCGCCGGCGGCTCTGAAGGCCAAAGCCTCGCCACGCCTCAT
CGAGTTGGCCAAGCCCAAGGGTGGAGCAAGCTTTCTAGACCAT
BO06248.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-RA | 1062 | CG6332-PA | 1..1059 | 17..1075 | 5295 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-RA | 1316 | CG6332-RA | 132..1190 | 17..1075 | 5295 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22014828..22015307 | 17..496 | 2400 | 100 | Plus |
3R | 32079331 | 3R | 22015827..22016086 | 816..1075 | 1300 | 100 | Plus |
3R | 32079331 | 3R | 22015540..22015760 | 595..815 | 1105 | 100 | Plus |
3R | 32079331 | 3R | 22015380..22015480 | 496..596 | 505 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 20:47:49 has no hits.
BO06248.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:11 Download gff for
BO06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 1..1062 | 17..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:50 Download gff for
BO06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 126..1193 | 9..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:09 Download gff for
BO06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 132..1190 | 17..1077 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:11 Download gff for
BO06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 126..1193 | 9..1079 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:27 Download gff for
BO06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6332-RA | 132..1190 | 17..1077 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:27 Download gff for
BO06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22014828..22015306 | 17..495 | 100 | -> | Plus |
3R | 22015380..22015479 | 496..595 | 100 | -> | Plus |
3R | 22015541..22015760 | 596..815 | 100 | -> | Plus |
3R | 22015827..22016086 | 816..1077 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:09 Download gff for
BO06248.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 17840550..17841028 | 17..495 | 100 | -> | Plus |
arm_3R | 17841102..17841201 | 496..595 | 100 | -> | Plus |
arm_3R | 17841263..17841482 | 596..815 | 100 | -> | Plus |
arm_3R | 17841549..17841808 | 816..1077 | 99 | | Plus |
BO06248.pep Sequence
Translation from 16 to 1093
> BO06248.pep
MTIQGLKCDLSPTVTTCLQLKDCVRPDCCPIRDPIPYDAECFVRDIGQEL
DKLTRRHERMFVKRRRLMEMAIPRRRTCRFVPKCACSFPKSIEMVRPCDA
QNHTRTEQLALPTVRRLLHRRRTAILAGDSIGESILNRWLRYSYLSLYSR
LTNIQPLVKPKKKKKKTEKQLAKHEKYIEKLAKPKKAPKVPKPDRGAGEF
DPVRLNQLASPKAYLEEIKPKWELTSQMKDYKATKRIKQISQPVVRDNVH
INENPEKVSPNALRYKPSARIKEMSEPLTTRDANQGLADVKENPFGIAPN
ALKYKASTRIKELAEPKEFENTHIRENPFAISPAALKAKASPRLIELAKP
KGGASFLDH
BO06248.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6332-PA | 353 | CG6332-PA | 1..353 | 1..353 | 1848 | 100 | Plus |