Clone BO06248 Report

Search the DGRC for BO06248

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:48
Vector:pDNR-Dual
Associated Gene/TranscriptCG6332-RA
Protein status:BO06248.pep: validated full length
Sequenced Size:1093

Clone Sequence Records

BO06248.3prime Sequence

875 bp (809 high quality bases) assembled on 2005-12-03

> BO06248.3prime
ATGGTCTAGAAAGCTTGCTCCACCCTTGGGCTTGGCCAACTCGATGAGGC
GTGGCGAGGCTTTGGCCTTCAGAGCCGCCGGCGATATGGCAAACGGATTC
TCCCGGATATGCGTGTTCTCGAACTCCTTGGGCTCCGCCAGCTCCTTGAT
CCGCGTGCTCGCCTTGTATTTGAGCGCGTTTGGCGCGATACCGAATGGAT
TCTCCTTGACATCCGCCAGTCCTTGGTTGGCATCGCGCGTGGTAAGTGGC
TCGGACATCTCCTTGATGCGGGCACTCGGCTTGTAGCGAAGGGCATTGGG
CGAGACCTTCTCCGGATTCTCGTTGATGTGGACATTATCGCGCACGACGG
GCTGCGATATTTGCTTGATCCGCTTGGTCGCCTTGTAGTCCTTCATCTGG
GAGGTCAGCTCCCACTTGGGTTTGATCTCCTCCAAATAGGCCTTGGGACT
GGCCAGCTGATTGAGACGCACGGGATCGAACTCCCCAGCTCCACGATCCG
GTTTCGGGACCTTTGGTGCTTTCTTTGGTTTCGCCAACTTTTCGATGTAC
TTCTCGTGCTTAGCCAGCTGCTTCTCCGTCTTCTTCTTCTTTTTCTTCGG
CTTAACCAACGGCTGGATATTCGTGAGACGACTGTACAGCGATAGATAGC
TGTAGCGAAGCCATCTGTTCAGTATGGACTCCCCAATTGAGTCGCCCGCC
AGAATGGCCGTTCGCCGCCTGTGAAGCAATCGACGGACCGTGGGCAGAGC
TAGTTGCTCGGTGCGTGTGTGATTCTGGGCGTCACATGGTCGCACCATCT
CGATGGACTTGGGAAATGAGCAGGCGCATTTCGGCACAAAGCGGCAGGTG
CGTCGCCTGGGTATGGCCATTTCAT

BO06248.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-PA 1062 CG6332-RA 205..1059 873..19 4275 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 12:06:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-RA 1316 CG6332-RA 336..1190 873..19 4275 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 12:06:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22015032..22015307 873..598 1380 100 Minus
3R 32079331 3R 22015827..22016086 278..19 1300 100 Minus
3R 32079331 3R 22015540..22015760 499..279 1105 100 Minus
3R 32079331 3R 22015380..22015480 598..498 505 100 Minus
Blast to na_te.dros performed on 2015-02-13 12:06:24 has no hits.

BO06248.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:13 Download gff for BO06248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-PA 202..1062 15..875 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:56 Download gff for BO06248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-PA 202..1062 15..875 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-02 17:57:49 Download gff for BO06248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 333..1193 15..875 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 14:25:34 Download gff for BO06248.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 333..1193 15..875 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 14:25:34 Download gff for BO06248.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 22015029..22015306 599..875 99 -> Minus
3R 22015380..22015479 499..598 100 -> Minus
3R 22015541..22015760 279..498 100 -> Minus
3R 22015827..22016089 15..278 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-02 17:57:49 Download gff for BO06248.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17840751..17841028 599..875 99 -> Minus
arm_3R 17841102..17841201 499..598 100 -> Minus
arm_3R 17841263..17841482 279..498 100 -> Minus
arm_3R 17841549..17841811 15..278 99   Minus

BO06248.5prime Sequence

840 bp (739 high quality bases) assembled on 2005-12-03

> BO06248.5prime
GAAGTTATCAGTCGACATGACCATCCAAGGACTGAAGTGTGACCTCAGCC
CGACGGTGACCACTTGTCTGCAGCTGAAGGACTGCGTCCGTCCGGACTGC
TGTCCCATCCGGGACCCCATTCCCTACGATGCCGAGTGCTTCGTTAGGGA
CATTGGCCAGGAGCTGGACAAACTGACGCGCCGACACGAGCGCATGTTCG
TCAAGCGGCGGCGTCTGATGGAAATGGCCATACCCAGGCGACGCACCTGC
CGCTTTGTGCCGAAATGCGCCTGCTCATTTCCCAAGTCCATCGAGATGGT
GCGACCATGTGACGCCCAGAATCACACACGCACCGAGCAACTAGCTCTGC
CCACGGTCCGTCGATTGCTTCACAGGCGGCGAACGGCCATTCTGGCGGGC
GACTCAATTGGGGAGTCCATACTGAACAGATGGCTTCGCTACAGCTATCT
ATCGCTGTACAGTCGTCTCACGAATATCCAGCCGTTGGTTAAGCCGAAGA
AAAAGAAGAAGAAGACGGAGAAGCAGCTGGCTAAGCACGAGAAGTACATC
GAAAAGTTGGCGAAACCAAAGAAAGCACCAAAGGTCCCGAAACCGGATCG
TGGAGCTGGGGAGTTCGATCCCGTGCGTCTCAATCAGCTGGCCAGTCCCA
AGGCCTATTTGGAGGAGATCAAACCCAAGTGGGAGCTGACCTCCCAGATG
AAGGACTACAAGGCGACCAAGCGGATCAAGCAAATATCGCAGCCCGTCGT
GCGCGATAATGTCCACATCAACGAGAATCCGGAGAAGGTCTCGCCCAATG
CCCTTCGCTAACAGCCGAGTGCCCGCATCAAGGAGATGTC

BO06248.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-PA 1062 CG6332-RA 1..824 17..840 4070 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-RA 1316 CG6332-RA 132..955 17..840 4090 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:55:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22014828..22015307 17..496 2400 100 Plus
3R 32079331 3R 22015540..22015755 595..810 1080 100 Plus
3R 32079331 3R 22015380..22015480 496..596 505 100 Plus
Blast to na_te.dros performed on 2015-02-13 15:55:58 has no hits.

BO06248.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:14 Download gff for BO06248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-PA 1..824 17..840 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:58 Download gff for BO06248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-PA 1..824 17..840 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:07 Download gff for BO06248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 126..955 9..840 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:18:00 Download gff for BO06248.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 126..955 9..840 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:18:00 Download gff for BO06248.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 22014822..22015306 9..495 99 -> Plus
3R 22015380..22015479 496..595 100 -> Plus
3R 22015541..22015760 596..815 99 -> Plus
3R 22015827..22015851 816..840 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:07 Download gff for BO06248.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17840544..17841028 9..495 99 -> Plus
arm_3R 17841102..17841201 496..595 100 -> Plus
arm_3R 17841263..17841482 596..815 99 -> Plus
arm_3R 17841549..17841573 816..840 100   Plus

BO06248.complete Sequence

1093 bp (1093 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630315

> BO06248.complete
GAAGTTATCAGTCGACATGACCATCCAAGGACTGAAGTGTGACCTCAGCC
CGACGGTGACCACTTGTCTGCAGCTGAAGGACTGCGTCCGTCCGGACTGC
TGTCCCATCCGGGACCCCATTCCCTACGATGCCGAGTGCTTCGTTAGGGA
CATTGGCCAGGAGCTGGACAAACTGACGCGCCGACACGAGCGCATGTTCG
TCAAGCGGCGGCGTCTGATGGAAATGGCCATACCCAGGCGACGCACCTGC
CGCTTTGTGCCGAAATGCGCCTGCTCATTTCCCAAGTCCATCGAGATGGT
GCGACCATGTGACGCCCAGAATCACACACGCACCGAGCAACTAGCTCTGC
CCACGGTCCGTCGATTGCTTCACAGGCGGCGAACGGCCATTCTGGCGGGC
GACTCAATTGGGGAGTCCATACTGAACAGATGGCTTCGCTACAGCTATCT
ATCGCTGTACAGTCGTCTCACGAATATCCAGCCGTTGGTTAAGCCGAAGA
AAAAGAAGAAGAAGACGGAGAAGCAGCTGGCTAAGCACGAGAAGTACATC
GAAAAGTTGGCGAAACCAAAGAAAGCACCAAAGGTCCCGAAACCGGATCG
TGGAGCTGGGGAGTTCGATCCCGTGCGTCTCAATCAGCTGGCCAGTCCCA
AGGCCTATTTGGAGGAGATCAAACCCAAGTGGGAGCTGACCTCCCAGATG
AAGGACTACAAGGCGACCAAGCGGATCAAGCAAATATCGCAGCCCGTCGT
GCGCGATAATGTCCACATCAACGAGAATCCGGAGAAGGTCTCGCCCAATG
CCCTTCGCTACAAGCCGAGTGCCCGCATCAAGGAGATGTCCGAGCCACTT
ACCACGCGCGATGCCAACCAAGGACTGGCGGATGTCAAGGAGAATCCATT
CGGTATCGCGCCAAACGCGCTCAAATACAAGGCGAGCACGCGGATCAAGG
AGCTGGCGGAGCCCAAGGAGTTCGAGAACACGCATATCCGGGAGAATCCG
TTTGCCATATCGCCGGCGGCTCTGAAGGCCAAAGCCTCGCCACGCCTCAT
CGAGTTGGCCAAGCCCAAGGGTGGAGCAAGCTTTCTAGACCAT

BO06248.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-RA 1062 CG6332-PA 1..1059 17..1075 5295 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:47:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-RA 1316 CG6332-RA 132..1190 17..1075 5295 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 22014828..22015307 17..496 2400 100 Plus
3R 32079331 3R 22015827..22016086 816..1075 1300 100 Plus
3R 32079331 3R 22015540..22015760 595..815 1105 100 Plus
3R 32079331 3R 22015380..22015480 496..596 505 100 Plus
Blast to na_te.dros performed on 2014-11-27 20:47:49 has no hits.

BO06248.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:11 Download gff for BO06248.complete
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 1..1062 17..1079 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:50 Download gff for BO06248.complete
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 126..1193 9..1079 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:09 Download gff for BO06248.complete
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 132..1190 17..1077 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:11 Download gff for BO06248.complete
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 126..1193 9..1079 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:28:27 Download gff for BO06248.complete
Subject Subject Range Query Range Percent Splice Strand
CG6332-RA 132..1190 17..1077 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:28:27 Download gff for BO06248.complete
Subject Subject Range Query Range Percent Splice Strand
3R 22014828..22015306 17..495 100 -> Plus
3R 22015380..22015479 496..595 100 -> Plus
3R 22015541..22015760 596..815 100 -> Plus
3R 22015827..22016086 816..1077 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:09 Download gff for BO06248.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 17840550..17841028 17..495 100 -> Plus
arm_3R 17841102..17841201 496..595 100 -> Plus
arm_3R 17841263..17841482 596..815 100 -> Plus
arm_3R 17841549..17841808 816..1077 99   Plus

BO06248.pep Sequence

Translation from 16 to 1093

> BO06248.pep
MTIQGLKCDLSPTVTTCLQLKDCVRPDCCPIRDPIPYDAECFVRDIGQEL
DKLTRRHERMFVKRRRLMEMAIPRRRTCRFVPKCACSFPKSIEMVRPCDA
QNHTRTEQLALPTVRRLLHRRRTAILAGDSIGESILNRWLRYSYLSLYSR
LTNIQPLVKPKKKKKKTEKQLAKHEKYIEKLAKPKKAPKVPKPDRGAGEF
DPVRLNQLASPKAYLEEIKPKWELTSQMKDYKATKRIKQISQPVVRDNVH
INENPEKVSPNALRYKPSARIKEMSEPLTTRDANQGLADVKENPFGIAPN
ALKYKASTRIKELAEPKEFENTHIRENPFAISPAALKAKASPRLIELAKP
KGGASFLDH

BO06248.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG6332-PA 353 CG6332-PA 1..353 1..353 1848 100 Plus