Clone Sequence Records
BO06249.3prime Sequence
863 bp (773 high quality bases) assembled on 2005-12-03
> BO06249.3prime
ATGGTCTAGAAAGCTTGCGTTAATGGCAAGTTGGTGTAGCGGATACTTGG
GGATAAAGTACTCCATGCGCTGGTTGCGTCTAATGGCGCACTCCTGGTAC
TCCAACCAGTCAGTGTAGGACTCATTGTGGCACTGCTCCGAATCCCCTTT
CTCGTAGAGCTGCTGGCGAAGGGAGAAAAAGAAGGGGCGCACTTTCTTCT
TTATGCTGTAGACGTGGCGCATCAGCCACTTTTCGACTTTAATCTCATTG
TAGATGGTCGATCTGTTCAAGCAGACGGTGGTCAGATTGTCCATTTTTGG
ATAGTAATTACGGACCGGTTTCGGATCCACAGTTATTCGAGGTATTTCAT
GCCTAGCTACGGCGAAACGGGTGTCGAAGAAATGTCTACCAAAAGTGACG
CCCCAAGCATTGTATTCCTTCTCCCCATATTGGTTTGTAACGAATTGTTG
AATACTGACGGTCAGCTCTTTGGGTGGTTCAGTTCCTTTTCCTCCGGCGG
CACCTCCTTCAGCCGCTCCTGCCGCCGCTGGAGCTCCATCAGCTGGCGCC
GCAGCTTCAGGCGGAGGTGGATCTTGTGGAGAAGCAAATAGTCGAATGCC
ACTTTTATGGATTTTCTTAGGAGCAGTAGTGCTTCCTCGGGTCACAGTAA
TTGGTGGCGGATTAGTTTCATTGTAGCCAGCTCTACGGTGATAATCATCC
TGTAGTTTCTTTGCGAACACTCTGAAGCCGTCGGATTTCTGCTGCATTTG
GTTATTGGAGCTTTGATCCACCTTGAAAATATCGAACGTCGACGGATCTG
GTTTTACTTGCCTTGGAGCTCTCTCCACCGGAACATCCTCTGCCAAGACG
ATTGGAAGTGACT
BO06249.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-PA | 954 | CG11018-RA | 107..951 | 863..19 | 4225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-RA | 1250 | CG11018-RA | 214..1058 | 863..19 | 4225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19662702..19663546 | 863..19 | 4225 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 06:54:21 has no hits.
BO06249.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:15 Download gff for
BO06249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-PA | 107..954 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:14:59 Download gff for
BO06249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-PA | 107..954 | 15..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:41 Download gff for
BO06249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 214..1063 | 14..863 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:25:43 Download gff for
BO06249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 214..1063 | 14..863 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:25:43 Download gff for
BO06249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19662702..19663551 | 14..863 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:41 Download gff for
BO06249.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15550207..15551056 | 14..863 | 99 | | Minus |
BO06249.5prime Sequence
833 bp (662 high quality bases) assembled on 2005-12-03
> BO06249.5prime
GAAGTTATCAGTCGACATGCATTGGTATGCAATCCTCCAAGGATTCCTCC
TGGGAATATCATCGATAATCATTTTATGGGTACAAGGAGTCGTTGGCTTG
CCATTGGCTACAACCGATCTGGAGTCACTTCCAATCGTCTTGGCAGAGGA
TGTTCCGGTGGAGAGAGCTCCAAGGCAAGTAAAACCAGATCCGTCGACGT
TCGATATTTTCAAGGTGGATCAAAGCTCCAATAACCAAATGCAGCAGAAA
TCCGACGGCTTCAGAGTGTTCGCAAAGAAACTACAGGATGATTATCACCG
TAGAGCTGGCTACAATGAAACTAATCCGCCACCAATTACTGTGACCCGAG
GAAGCACTACTGCTCCTAAGAAAATCCATAAAAGTGGCATTCGACTATTT
GCTTCTCCACAAGATCCACCTCCGCCTGAAGCTGCGGCGCCAGCTGATGG
AGCTCCAGCGGCGGCAGGAGCGGCTGAAGGAGGTGCCGCCGGAGGAAAAG
GAACTGAACCACCCAAAGAGCTGACCGTCAGTATTCAACAATTCGTTACA
AACCAATATGGGGAGAAGGAATACAATGCTTGGGGCGTCACTTTTGGTAG
ACATTTCTTCGACACCCGTTTCGCCGTAGCTAGGCATGAAATACCTCGAA
TAACTGTGGATCCGAAACCGGTCCGTAATTACTATCCAAAAATGGACAAT
CTGACCACCGTCTGCTTGAACAGATCGACCATCTACAATGAGATTAAAGT
CGAAAAGTGGCTGATGCGCCACGTCTACAGCATAAAGAAGAAAGTGCGCC
CCTTCTTTTTCTCCCTTCGCCAGCAGCTCTACG
BO06249.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-PA | 954 | CG11018-RA | 1..817 | 17..833 | 4085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:02:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-RA | 1250 | CG11018-RA | 108..924 | 17..833 | 4085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19662650..19663412 | 71..833 | 3815 | 100 | Plus |
| 2R | 25286936 | 2R | 19662543..19662596 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:02:10 has no hits.
BO06249.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:16 Download gff for
BO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:01 Download gff for
BO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-PA | 1..817 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:34 Download gff for
BO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..924 | 17..833 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:08:57 Download gff for
BO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..924 | 17..833 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:08:57 Download gff for
BO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19662543..19662596 | 17..70 | 100 | -> | Plus |
| 2R | 19662650..19663412 | 71..833 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:34 Download gff for
BO06249.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15550048..15550101 | 17..70 | 100 | -> | Plus |
| arm_2R | 15550155..15550917 | 71..833 | 100 | | Plus |
BO06249.complete Sequence
985 bp (985 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630316
> BO06249.complete
GAAGTTATCAGTCGACATGCATTGGTATGCAATCCTCCAAGGATTCCTCC
TGGGAATATCATCGATAATCATTTTATGGGTACAAGGAGTCGTTGGCTTG
CCATTGGCTACAACCGATCTGGAGTCACTTCCAATCGTCTTGGCAGAGGA
TGTTCCGGTGGAGAGAGCTCCAAGGCAAGTAAAACCAGATCCGTCGACGT
TCGATATTTTCAAGGTGGATCAAAGCTCCAATAACCAAATGCAGCAGAAA
TCCGACGGCTTCAGAGTGTTCGCAAAGAAACTACAGGATGATTATCACCG
TAGAGCTGGCTACAATGAAACTAATCCGCCACCAATTACTGTGACCCGAG
GAAGCACTACTGCTCCTAAGAAAATCCATAAAAGTGGCATTCGACTATTT
GCTTCTCCACAAGATCCACCTCCGCCTGAAGCTGCGGCGCCAGCTGATGG
AGCTCCAGCGGCGGCAGGAGCGGCTGAAGGAGGTGCCGCCGGAGGAAAAG
GAACTGAACCACCCAAAGAGCTGACCGTCAGTATTCAACAATTCGTTACA
AACCAATATGGGGAGAAGGAATACAATGCTTGGGGCGTCACTTTTGGTAG
ACATTTCTTCGACACCCGTTTCGCCGTAGCTAGGCATGAAATACCTCGAA
TAACTGTGGATCCGAAACCGGTCCGTAATTACTATCCAAAAATGGACAAT
CTGACCACCGTCTGCTTGAACAGATCGACCATCTACAATGAGATTAAAGT
CGAAAAGTGGCTGATGCGCCACGTCTACAGCATAAAGAAGAAAGTGCGCC
CCTTCTTTTTCTCCCTTCGCCAGCAGCTCTACGAGAAAGGGGATTCGGAG
CAGTGCCACAATGAGTCCTACACTGACTGGTTGGAGTACCAGGAGTGCGC
CATTAGACGCAACCAGCGCATGGAGTACTTTATCCCCAAGTATCCGCTAC
ACCAACTTGCCATTAACGCAAGCTTTCTAGACCAT
BO06249.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-RA | 954 | CG11018-PA | 1..951 | 17..967 | 4755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-RA | 1250 | CG11018-RA | 108..1058 | 17..967 | 4755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:09:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19662650..19663546 | 71..967 | 4485 | 100 | Plus |
| 2R | 25286936 | 2R | 19662543..19662596 | 17..70 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:09:06 has no hits.
BO06249.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:12 Download gff for
BO06249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 1..954 | 17..971 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:53 Download gff for
BO06249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..1063 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:26 Download gff for
BO06249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..1058 | 17..969 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:12 Download gff for
BO06249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..1063 | 17..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:53 Download gff for
BO06249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11018-RA | 108..1058 | 17..969 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:53 Download gff for
BO06249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19662543..19662596 | 17..70 | 100 | -> | Plus |
| 2R | 19662650..19663546 | 71..969 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:26 Download gff for
BO06249.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15550048..15550101 | 17..70 | 100 | -> | Plus |
| arm_2R | 15550155..15551051 | 71..969 | 99 | | Plus |
BO06249.pep Sequence
Translation from 16 to 985
> BO06249.pep
MHWYAILQGFLLGISSIIILWVQGVVGLPLATTDLESLPIVLAEDVPVER
APRQVKPDPSTFDIFKVDQSSNNQMQQKSDGFRVFAKKLQDDYHRRAGYN
ETNPPPITVTRGSTTAPKKIHKSGIRLFASPQDPPPPEAAAPADGAPAAA
GAAEGGAAGGKGTEPPKELTVSIQQFVTNQYGEKEYNAWGVTFGRHFFDT
RFAVARHEIPRITVDPKPVRNYYPKMDNLTTVCLNRSTIYNEIKVEKWLM
RHVYSIKKKVRPFFFSLRQQLYEKGDSEQCHNESYTDWLEYQECAIRRNQ
RMEYFIPKYPLHQLAINASFLDH
BO06249.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11018-PA | 317 | CG11018-PA | 1..317 | 1..317 | 1693 | 100 | Plus |
