Clone Sequence Records
BO06258.3prime Sequence
874 bp (807 high quality bases) assembled on 2005-12-03
> BO06258.3prime
ATGGTCTAGAAAGCTTGCATATACCAATAATCCAAAAATATATTTAATGT
CTGAAAAATAAATAACGAAAATCCATGAAATAAGTGCACCTAACCATGAT
GACCTTAAGCTAGCCCCACTACTTGCGTTGACGGGCATGGCATTATCAAC
CCGGGGTAGCCTTTTGCTGACCTCGCACTTGTGGATCATGGCTCTGCCCA
TGCTGTCGCCTGCGAAGGACCTTAGTTGCCTGGCAACCTCAAGTCCGCAC
AACAAGGCTGCCCTCGTATAGTAACAGTCGAGAACATCGTTGAATATGTG
GCACACCTTGCTGGCATTCCTGCGTTCGTACCAATCAGCCGGTGCCTCGC
ACTCGATCATGTCCGTCCGGAGTTCCTTGAGGCAGTTGTGCGACTCCTGG
AGTCCAGTGCATCGCTTCCTGTTGCTGCCATCGCCACCAACGCAGACCTC
CGATTGGAAGTAGCTCAGTCCATCAGCTAGTCTTCCGTATATGTTATCCG
GTGCCAAGACACAATTGCGCATGGAGTTCCGAATATTGTCCAGCACATCG
GTGATCTCGGCGCAGGACTCGGTTAGTGATGGCTGCGCCAGGAGCAGGAC
AATCCTCTCAGGACTCACCACATAGAGACGCGCCAGTTGCATCAACACGG
GATTATCGTCGCANAGGCGTCCTGCTTTCGATCCAACTACGCGTTCACAT
CCGGCCGTTCCGCCAGACAATCCTGCCACTGATGCCTTTATTTCGTAGCC
TGGTGGGCAGGTTGACCCGGGGTCTGTGTTGTTCTTATGACCTCCGCCAT
GGCGGGATGAATGTGGGGCTAGTCCGTAGCGCTGAAAGTACCAGGGAAAC
CAATAGCTTGACCCGATTCAAATG
BO06258.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4891-PA | 909 | CG4891-RA | 72..906 | 853..19 | 4156 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 02:59:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4891-RA | 948 | CG4891-RA | 88..945 | 874..19 | 4229 | 99.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 02:59:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16095090..16095941 | 869..19 | 4199 | 99.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 02:59:46 has no hits.
BO06258.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:29 Download gff for
BO06258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-PA | 49..909 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:19 Download gff for
BO06258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-PA | 49..909 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:18 Download gff for
BO06258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 88..948 | 15..874 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:39:45 Download gff for
BO06258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 88..948 | 15..874 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:39:45 Download gff for
BO06258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16095084..16095947 | 14..874 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:18 Download gff for
BO06258.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16095084..16095947 | 14..874 | 99 | <- | Minus |
BO06258.5prime Sequence
938 bp (717 high quality bases) assembled on 2005-12-03
> BO06258.5prime
GAAGTTATCAGTCGACATGAGAGAAAAGTGGAAAGCTCTGTTGCTATTGC
TTCAGCTGCTTGCTCATTTGGAATCGGGTCAAGCTATTTGGTTTCCCTGG
TACTTTCAGCGCTACGGACTAGCCCCACATTCATCCCGCCATGGCGGAGG
TCATAAGAACAACACAGACCCCGGGTCAACCTGCCCACCAGGCTACGAAA
TAAAGGCATCAGTGGCAGGATTGTCTGGCGGAACGGCCGGATGTGAACGC
GTAGTTGGATCGAAAGCAGGACGCCTTTGCGACGATAATCCCGTGTTGAT
GCAACTGGCGCGTCTCTATGTGGTGAGTCCTGAGAGGATTGTCCTGCTCC
TGGCGCAGCCATCACTAACCGAGTCCTGCGCCGAGATCACCGATGTGCTG
GACAATATTCGGAACTCCATGCGCAATTGTGTCTTGGCACCGGATAACAT
ATACGGAAGACTAGCTGATGGACTGAGCTACTTCCAATCGGAGGTCTGCG
TTGGTGGCGATGGCAGCAACAGGAAGCGATGCACTGGACTCCAGGAGTCG
CACAACTGCCTCAAGGAACTCCGGACGGACATGATCGAGTGCGAGGCACC
GGCTGATTGGTACGAACGCAGGAATGCCAGCAAGGTGTGCCACATATTCA
ACGATGTTCTCGACTGTTACTATACGAGGGCAGCCTTGTTGTGCGGACTT
GAGGTTGCCAGGCAACTAAGGTCCTTCGCAGGCGACAGCATGGGCAGAGC
CATGATCCACAAGTGCGAGGTCAGCAAAAGGCTACCCCGGGTTGATAATG
CCATGCCCGTCAACGCAAGTAGTGGGGCTAGCTTAAGGTCATCATGGTTA
GGTGCACTTATTTCATGGATTTTCGTTATTTATTTTTCAGACATTAAATA
TATTTTTTGGATATTGGTATATGCAAGCTTTCTAGACC
BO06258.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4891-PA | 909 | CG4891-RA | 1..891 | 17..907 | 4455 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:18:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4891-RA | 948 | CG4891-RA | 40..945 | 17..922 | 4485 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:17:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16095036..16095941 | 17..922 | 4485 | 99.7 | Plus |
Blast to na_te.dros performed 2015-02-12 16:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1553..1591 | 31..71 | 119 | 80.5 | Plus |
BO06258.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:30 Download gff for
BO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:20 Download gff for
BO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-PA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:42 Download gff for
BO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 40..948 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:36:06 Download gff for
BO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 40..948 | 17..926 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:36:06 Download gff for
BO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16095036..16095944 | 17..926 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:42 Download gff for
BO06258.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16095036..16095944 | 17..926 | 99 | | Plus |
BO06258.complete Sequence
940 bp (940 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630318
> BO06258.complete
GAAGTTATCAGTCGACATGAGAGAAAAGTGGAAAGCTCTGTTGCTATTGC
TTCAGCTGCTTGCTCATTTGGAATCGGGTCAAGCTATTTGGTTTCCCTGG
TACTTTCAGCGCTACGGACTAGCCCCACATTCATCCCGCCATGGCGGAGG
TCATAAGAACAACACAGACCCCGGGTCAACCTGCCCACCAGGCTACGAAA
TAAAGGCATCAGTGGCAGGATTGTCTGGCGGAACGGCCGGATGTGAACGC
GTAGTTGGATCGAAAGCAGGACGCCTTTGCGACGATAATCCCGTGTTGAT
GCAACTGGCGCGTCTCTATGTGGTGAGTCCTGAGAGGATTGTCCTGCTCC
TGGCGCAGCCATCACTAACCGAGTCCTGCGCCGAGATCACCGATGTGCTG
GACAATATTCGGAACTCCATGCGCAATTGTGTCTTGGCACCGGATAACAT
ATACGGAAGACTAGCTGATGGACTGAGCTACTTCCAATCGGAGGTCTGCG
TTGGTGGCGATGGCAGCAACAGGAAGCGATGCACTGGACTCCAGGAGTCG
CACAACTGCCTCAAGGAACTCCGGACGGACATGATCGAGTGCGAGGCACC
GGCTGATTGGTACGAACGCAGGAATGCCAGCAAGGTGTGCCACATATTCA
ACGATGTTCTCGACTGTTACTATACGAGGGCAGCCTTGTTGTGCGGACTT
GAGGTTGCCAGGCAACTAAGGTCCTTCGCAGGCGACAGCATGGGCAGAGC
CATGATCCACAAGTGCGAGGTCAGCAAAAGGCTACCCCGGGTTGATAATG
CCATGCCCGTCAACGCAAGTAGTGGGGCTAGCTTAAGGTCATCATGGTTA
GGTGCACTTATTTCATGGATTTTCGTTATTTATTTTTCAGACATTAAATA
TATTTTTGGATTATTGGTATATGCAAGCTTTCTAGACCAT
BO06258.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:03:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4891-RA | 909 | CG4891-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4891-RA | 948 | CG4891-RA | 40..945 | 17..922 | 4530 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:03:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 16095036..16095941 | 17..922 | 4530 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 08:03:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3S18 | 6126 | 3S18 DM23420 6126bp Derived from U23420 (g733531) (Rel. 48, Last updated, Version 3). | 1553..1591 | 31..71 | 119 | 80.5 | Plus |
BO06258.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:16 Download gff for
BO06258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:58 Download gff for
BO06258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 28..936 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 09:55:14 Download gff for
BO06258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 40..945 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:16 Download gff for
BO06258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 28..936 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:10:11 Download gff for
BO06258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4891-RA | 40..945 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:10:11 Download gff for
BO06258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 16095036..16095941 | 17..924 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 09:55:14 Download gff for
BO06258.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 16095036..16095941 | 17..924 | 99 | | Plus |
BO06258.pep Sequence
Translation from 16 to 940
> BO06258.pep
MREKWKALLLLLQLLAHLESGQAIWFPWYFQRYGLAPHSSRHGGGHKNNT
DPGSTCPPGYEIKASVAGLSGGTAGCERVVGSKAGRLCDDNPVLMQLARL
YVVSPERIVLLLAQPSLTESCAEITDVLDNIRNSMRNCVLAPDNIYGRLA
DGLSYFQSEVCVGGDGSNRKRCTGLQESHNCLKELRTDMIECEAPADWYE
RRNASKVCHIFNDVLDCYYTRAALLCGLEVARQLRSFAGDSMGRAMIHKC
EVSKRLPRVDNAMPVNASSGASLRSSWLGALISWIFVIYFSDIKYIFGLL
VYASFLDH
BO06258.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:20:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4891-PA | 302 | CG4891-PA | 1..302 | 1..302 | 1608 | 100 | Plus |
