Clone Sequence Records
BO06262.3prime Sequence
862 bp (679 high quality bases) assembled on 2005-12-03
> BO06262.3prime
ATGGTCTAGAAAGCTTGCCAAAATGTTCAGCAGATCGCCCAGACGGGGCA
GATAAAAGTCTGGCTGGGGCAGCCTGTCTTTTTCCAGCCGGACATCCGAG
AGATTATTGTAACGACCCGTGCCCACCAGAAGCGATAGCATGCCACAATT
GCTGGCGAAACCGACATCTATTTTGAGGCAGTCACCAATCATAAGCGTTC
GCTCGGTACGTAGTCCCTCGGCCTTGATAAAGGGCTCAAGGACCAATGGA
TTTGGCTTGCCCATCTCGAGGGCTTCACGCTCCGAACATGCCTCGATTCC
GGCCACAAAGGCCCCAGTGCCGGGGATACAAAAGGATGGATACTTGTGCA
CGGCATCCCGGTTGGTGACCAAAAAGGCGGCGTCGGGATTACTGCAGAGG
ATGTGACAGGCGCGCGCCATCTTGCAGTAGCTAAAGTACTCATCCCAGCC
GACCACCACGGCACCCACGTCCTTCGCCGCCTCTGGGTTCCCAAACTCGC
GTGTCACAAAGTCCGGCCATTTGTCGCCCGGAGGCAGTTCATCTGTTCCG
CCGGCTCCGTAGCTGTCGATTCCGCGCTGCCTTAATTCCCGCGCAATGGC
CGCATTGCCCACCACATAGACCTTGTGCCGGGTCCTGTCGAACTTCGGAC
TCCCAACCAGATAGTCGGCGATGGCCGCCGTGGGCGAAATGATGTGTCGG
TCGCTGGGTAAATGGAAGCCAAGGCGCTGGGAGCGCTCAAAGAGCTCCTG
TCGCGTCTTTAGGCCATTGTTGGTAATCAGGTAAACTTTTTTGTCAAATC
GATCCTGCAGGGCATTCACCACATCCGGAGCACCAGCGATGGCCGTGTCA
TCCTGCCCTATG
BO06262.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-PA | 948 | CG5577-RA | 107..945 | 857..19 | 4195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-RB | 2162 | CG5577-RB | 146..989 | 862..19 | 4205 | 99.9 | Minus |
CG5577-RA | 1021 | CG5577-RA | 146..989 | 862..19 | 4205 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17840036..17840719 | 179..862 | 3405 | 99.9 | Plus |
3L | 28110227 | 3L | 17839823..17839983 | 19..179 | 805 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:02:45 has no hits.
BO06262.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:31 Download gff for
BO06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-PA | 102..948 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:22 Download gff for
BO06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-PA | 102..948 | 16..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:11 Download gff for
BO06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 146..994 | 13..862 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:54 Download gff for
BO06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 146..994 | 13..862 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:54 Download gff for
BO06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17839818..17839982 | 13..178 | 98 | <- | Plus |
3L | 17840036..17840719 | 179..862 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:11 Download gff for
BO06262.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17832918..17833082 | 13..178 | 98 | <- | Plus |
arm_3L | 17833136..17833819 | 179..862 | 99 | | Plus |
BO06262.5prime Sequence
826 bp (753 high quality bases) assembled on 2005-12-03
> BO06262.5prime
GAAGTTATCAGTCGACATGTCCAGAGGCGGTGCTATCGACTTGACCGGCC
TATCCGAGGAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACACGGTTCTC
TGCGACGGCGACGGCACCATATGGCAGGATGACACGGCCATCGCTGGTGC
TCCGGATGTGGTGAATGCCCTGCAGGATCGATTTGACAAAAAAGTTTACC
TGATTACCAACAATGGCCTAAAGACGCGACAGGAGCTCTTTGAGCGCTCC
CAGCGCCTTGGCTTCCATTTACCCAGCGACCGACACATCATTTCGCCCAC
GGCGGCCATCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGACAGGACCC
GGCACAAGGTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGAATTAAGG
CAGCGCGGAATCGACAGCTACGGAGCCGGCGGAACAGATGAACTGCCTCC
GGGCGACAAATGGCCGGACTTTGTGACACGCGAGTTTGGGAACCCAGAGG
CGGCGAAGGACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTACTTTAGC
TACTGCAAGATGGCGCGCGCCTGTCACATCCTCTGCAGTAATCCCGACGC
CGCCTTTTTGGTCACCAACCGGGATGCCGTGCACAAGTATCCATCCTTTT
GTATCCCCGGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATGTTCGGAG
CGTGAAGCCCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTGAGCCCTT
TATCAAGGCCGAGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACT
GCCTCAAAATAGATGTCGGGTTCGCC
BO06262.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-PA | 948 | CG5577-RA | 1..810 | 17..826 | 4025 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:00:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-RB | 2162 | CG5577-RB | 45..854 | 17..826 | 4035 | 99.9 | Plus |
CG5577-RA | 1021 | CG5577-RA | 45..854 | 17..826 | 4035 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:00:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17840036..17840724 | 801..113 | 3445 | 100 | Minus |
3L | 28110227 | 3L | 17841286..17841383 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 03:00:12 has no hits.
BO06262.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:32 Download gff for
BO06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:23 Download gff for
BO06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:20 Download gff for
BO06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 39..854 | 10..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:17 Download gff for
BO06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 39..854 | 10..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:17 Download gff for
BO06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17839958..17839982 | 802..826 | 96 | <- | Minus |
3L | 17840036..17840723 | 114..801 | 100 | <- | Minus |
3L | 17841287..17841389 | 10..113 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:20 Download gff for
BO06262.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17833058..17833082 | 802..826 | 96 | <- | Minus |
arm_3L | 17833136..17833823 | 114..801 | 100 | <- | Minus |
arm_3L | 17834387..17834489 | 10..113 | 97 | | Minus |
BO06262.complete Sequence
979 bp (979 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630319
> BO06262.complete
GAAGTTATCAGTCGACATGTCCAGAGGCGGTGCTATCGACTTGACCGGCC
TATCCGAGGAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACACGGTTCTC
TGCGACGGCGACGGCACCATATGGCAGGATGACACGGCCATCGCTGGTGC
TCCGGATGTGGTGAATGCCCTGCAGGATCGATTTGACAAAAAAGTTTACC
TGATTACCAACAATGGCCTAAAGACGCGACAGGAGCTCTTTGAGCGCTCC
CAGCGCCTTGGCTTCCATTTACCCAGCGACCGACACATCATTTCGCCCAC
GGCGGCCATCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGACAGGACCC
GGCACAAGGTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGAATTAAGG
CAGCGCGGAATCGACAGCTACGGAGCCGGCGGAACAGATGAACTGCCTCC
GGGCGACAAATGGCCGGACTTTGTGACACGCGAGTTTGGGAACCCAGAGG
CGGCGAAGGACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTACTTTAGC
TACTGCAAGATGGCGCGCGCCTGTCACATCCTCTGCAGTAATCCCGACGC
CGCCTTTTTGGTCACCAACCGGGATGCCGTGCACAAGTATCCATCCTTTT
GTATCCCCGGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATGTTCGGAG
CGTGAAGCCCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTGAGCCCTT
TATCAAGGCCGAGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACT
GCCTCAAAATAGATGTCGGTTTCGCCAGCAATTGTGGCATGCTATCGCTT
CTGGTGGGCACGGGTCGTTACAATAATCTCTCGGATGTCCGGCTGGAAAA
AGACAGGCTGCCCCAGCCAGACTTTTATCTGCCCCGTCTGGGCGATCTGC
TGAACATTTTGGCAAGCTTTCTAGACCAT
BO06262.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-RB | 948 | CG5577-PB | 1..945 | 17..961 | 4725 | 100 | Plus |
CG5577-RA | 948 | CG5577-PA | 1..945 | 17..961 | 4725 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-RB | 2162 | CG5577-RB | 45..989 | 17..961 | 4725 | 100 | Plus |
CG5577-RA | 1021 | CG5577-RA | 45..989 | 17..961 | 4725 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17840036..17840724 | 801..113 | 3445 | 100 | Minus |
3L | 28110227 | 3L | 17839823..17839983 | 961..801 | 805 | 100 | Minus |
3L | 28110227 | 3L | 17841286..17841383 | 114..17 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:12:06 has no hits.
BO06262.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:51 Download gff for
BO06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 1..948 | 17..964 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:14 Download gff for
BO06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 16..971 | 10..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:51 Download gff for
BO06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 45..989 | 17..963 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:51 Download gff for
BO06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 16..971 | 10..967 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:35 Download gff for
BO06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5577-RA | 45..989 | 17..963 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:35 Download gff for
BO06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17839820..17839982 | 802..963 | 98 | <- | Minus |
3L | 17840036..17840723 | 114..801 | 100 | <- | Minus |
3L | 17841287..17841383 | 17..113 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:51 Download gff for
BO06262.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17832920..17833082 | 802..963 | 98 | <- | Minus |
arm_3L | 17833136..17833823 | 114..801 | 100 | <- | Minus |
arm_3L | 17834387..17834483 | 17..113 | 100 | | Minus |
BO06262.pep Sequence
Translation from 16 to 979
> BO06262.pep
MSRGGAIDLTGLSEEQVSEWLQSFDTVLCDGDGTIWQDDTAIAGAPDVVN
ALQDRFDKKVYLITNNGLKTRQELFERSQRLGFHLPSDRHIISPTAAIAD
YLVGSPKFDRTRHKVYVVGNAAIARELRQRGIDSYGAGGTDELPPGDKWP
DFVTREFGNPEAAKDVGAVVVGWDEYFSYCKMARACHILCSNPDAAFLVT
NRDAVHKYPSFCIPGTGAFVAGIEACSEREALEMGKPNPLVLEPFIKAEG
LRTERTLMIGDCLKIDVGFASNCGMLSLLVGTGRYNNLSDVRLEKDRLPQ
PDFYLPRLGDLLNILASFLDH
BO06262.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5577-PB | 315 | CG5577-PB | 1..315 | 1..315 | 1668 | 100 | Plus |
CG5577-PA | 315 | CG5577-PA | 1..315 | 1..315 | 1668 | 100 | Plus |
CG5567-PA | 330 | CG5567-PA | 16..326 | 1..319 | 495 | 37.6 | Plus |
CG32488-PB | 307 | CG32488-PB | 8..306 | 8..315 | 410 | 35 | Plus |
CG32488-PA | 307 | CG32488-PA | 8..306 | 8..315 | 410 | 35 | Plus |