Clone BO06262 Report

Search the DGRC for BO06262

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:62
Vector:pDNR-Dual
Associated Gene/TranscriptCG5577-RA
Protein status:BO06262.pep: validated full length
Sequenced Size:979

Clone Sequence Records

BO06262.3prime Sequence

862 bp (679 high quality bases) assembled on 2005-12-03

> BO06262.3prime
ATGGTCTAGAAAGCTTGCCAAAATGTTCAGCAGATCGCCCAGACGGGGCA
GATAAAAGTCTGGCTGGGGCAGCCTGTCTTTTTCCAGCCGGACATCCGAG
AGATTATTGTAACGACCCGTGCCCACCAGAAGCGATAGCATGCCACAATT
GCTGGCGAAACCGACATCTATTTTGAGGCAGTCACCAATCATAAGCGTTC
GCTCGGTACGTAGTCCCTCGGCCTTGATAAAGGGCTCAAGGACCAATGGA
TTTGGCTTGCCCATCTCGAGGGCTTCACGCTCCGAACATGCCTCGATTCC
GGCCACAAAGGCCCCAGTGCCGGGGATACAAAAGGATGGATACTTGTGCA
CGGCATCCCGGTTGGTGACCAAAAAGGCGGCGTCGGGATTACTGCAGAGG
ATGTGACAGGCGCGCGCCATCTTGCAGTAGCTAAAGTACTCATCCCAGCC
GACCACCACGGCACCCACGTCCTTCGCCGCCTCTGGGTTCCCAAACTCGC
GTGTCACAAAGTCCGGCCATTTGTCGCCCGGAGGCAGTTCATCTGTTCCG
CCGGCTCCGTAGCTGTCGATTCCGCGCTGCCTTAATTCCCGCGCAATGGC
CGCATTGCCCACCACATAGACCTTGTGCCGGGTCCTGTCGAACTTCGGAC
TCCCAACCAGATAGTCGGCGATGGCCGCCGTGGGCGAAATGATGTGTCGG
TCGCTGGGTAAATGGAAGCCAAGGCGCTGGGAGCGCTCAAAGAGCTCCTG
TCGCGTCTTTAGGCCATTGTTGGTAATCAGGTAAACTTTTTTGTCAAATC
GATCCTGCAGGGCATTCACCACATCCGGAGCACCAGCGATGGCCGTGTCA
TCCTGCCCTATG

BO06262.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-PA 948 CG5577-RA 107..945 857..19 4195 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-RB 2162 CG5577-RB 146..989 862..19 4205 99.9 Minus
CG5577-RA 1021 CG5577-RA 146..989 862..19 4205 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:43
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17840036..17840719 179..862 3405 99.9 Plus
3L 28110227 3L 17839823..17839983 19..179 805 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:02:45 has no hits.

BO06262.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:31 Download gff for BO06262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-PA 102..948 16..862 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:22 Download gff for BO06262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-PA 102..948 16..862 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:11 Download gff for BO06262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 146..994 13..862 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:40:54 Download gff for BO06262.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 146..994 13..862 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:40:54 Download gff for BO06262.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17839818..17839982 13..178 98 <- Plus
3L 17840036..17840719 179..862 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:11 Download gff for BO06262.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17832918..17833082 13..178 98 <- Plus
arm_3L 17833136..17833819 179..862 99   Plus

BO06262.5prime Sequence

826 bp (753 high quality bases) assembled on 2005-12-03

> BO06262.5prime
GAAGTTATCAGTCGACATGTCCAGAGGCGGTGCTATCGACTTGACCGGCC
TATCCGAGGAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACACGGTTCTC
TGCGACGGCGACGGCACCATATGGCAGGATGACACGGCCATCGCTGGTGC
TCCGGATGTGGTGAATGCCCTGCAGGATCGATTTGACAAAAAAGTTTACC
TGATTACCAACAATGGCCTAAAGACGCGACAGGAGCTCTTTGAGCGCTCC
CAGCGCCTTGGCTTCCATTTACCCAGCGACCGACACATCATTTCGCCCAC
GGCGGCCATCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGACAGGACCC
GGCACAAGGTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGAATTAAGG
CAGCGCGGAATCGACAGCTACGGAGCCGGCGGAACAGATGAACTGCCTCC
GGGCGACAAATGGCCGGACTTTGTGACACGCGAGTTTGGGAACCCAGAGG
CGGCGAAGGACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTACTTTAGC
TACTGCAAGATGGCGCGCGCCTGTCACATCCTCTGCAGTAATCCCGACGC
CGCCTTTTTGGTCACCAACCGGGATGCCGTGCACAAGTATCCATCCTTTT
GTATCCCCGGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATGTTCGGAG
CGTGAAGCCCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTGAGCCCTT
TATCAAGGCCGAGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACT
GCCTCAAAATAGATGTCGGGTTCGCC

BO06262.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:37:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-PA 948 CG5577-RA 1..810 17..826 4025 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-RB 2162 CG5577-RB 45..854 17..826 4035 99.9 Plus
CG5577-RA 1021 CG5577-RA 45..854 17..826 4035 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:00:10
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17840036..17840724 801..113 3445 100 Minus
3L 28110227 3L 17841286..17841383 114..17 490 100 Minus
Blast to na_te.dros performed on 2015-02-11 03:00:12 has no hits.

BO06262.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:32 Download gff for BO06262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:23 Download gff for BO06262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:20 Download gff for BO06262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 39..854 10..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:17 Download gff for BO06262.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 39..854 10..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:17 Download gff for BO06262.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17839958..17839982 802..826 96 <- Minus
3L 17840036..17840723 114..801 100 <- Minus
3L 17841287..17841389 10..113 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:20 Download gff for BO06262.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17833058..17833082 802..826 96 <- Minus
arm_3L 17833136..17833823 114..801 100 <- Minus
arm_3L 17834387..17834489 10..113 97   Minus

BO06262.complete Sequence

979 bp (979 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630319

> BO06262.complete
GAAGTTATCAGTCGACATGTCCAGAGGCGGTGCTATCGACTTGACCGGCC
TATCCGAGGAGCAGGTGAGCGAGTGGCTCCAAAGTTTCGACACGGTTCTC
TGCGACGGCGACGGCACCATATGGCAGGATGACACGGCCATCGCTGGTGC
TCCGGATGTGGTGAATGCCCTGCAGGATCGATTTGACAAAAAAGTTTACC
TGATTACCAACAATGGCCTAAAGACGCGACAGGAGCTCTTTGAGCGCTCC
CAGCGCCTTGGCTTCCATTTACCCAGCGACCGACACATCATTTCGCCCAC
GGCGGCCATCGCCGACTATCTGGTTGGGAGTCCGAAGTTCGACAGGACCC
GGCACAAGGTCTATGTGGTGGGCAATGCGGCCATTGCGCGGGAATTAAGG
CAGCGCGGAATCGACAGCTACGGAGCCGGCGGAACAGATGAACTGCCTCC
GGGCGACAAATGGCCGGACTTTGTGACACGCGAGTTTGGGAACCCAGAGG
CGGCGAAGGACGTGGGTGCCGTGGTGGTCGGCTGGGATGAGTACTTTAGC
TACTGCAAGATGGCGCGCGCCTGTCACATCCTCTGCAGTAATCCCGACGC
CGCCTTTTTGGTCACCAACCGGGATGCCGTGCACAAGTATCCATCCTTTT
GTATCCCCGGCACTGGGGCCTTTGTGGCCGGAATCGAGGCATGTTCGGAG
CGTGAAGCCCTCGAGATGGGCAAGCCAAATCCATTGGTCCTTGAGCCCTT
TATCAAGGCCGAGGGACTACGTACCGAGCGAACGCTTATGATTGGTGACT
GCCTCAAAATAGATGTCGGTTTCGCCAGCAATTGTGGCATGCTATCGCTT
CTGGTGGGCACGGGTCGTTACAATAATCTCTCGGATGTCCGGCTGGAAAA
AGACAGGCTGCCCCAGCCAGACTTTTATCTGCCCCGTCTGGGCGATCTGC
TGAACATTTTGGCAAGCTTTCTAGACCAT

BO06262.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:12:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-RB 948 CG5577-PB 1..945 17..961 4725 100 Plus
CG5577-RA 948 CG5577-PA 1..945 17..961 4725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:12:08
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-RB 2162 CG5577-RB 45..989 17..961 4725 100 Plus
CG5577-RA 1021 CG5577-RA 45..989 17..961 4725 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:12:05
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17840036..17840724 801..113 3445 100 Minus
3L 28110227 3L 17839823..17839983 961..801 805 100 Minus
3L 28110227 3L 17841286..17841383 114..17 490 100 Minus
Blast to na_te.dros performed on 2014-11-27 10:12:06 has no hits.

BO06262.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:51 Download gff for BO06262.complete
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 1..948 17..964 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:14 Download gff for BO06262.complete
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 16..971 10..967 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:36:51 Download gff for BO06262.complete
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 45..989 17..963 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:51 Download gff for BO06262.complete
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 16..971 10..967 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:15:35 Download gff for BO06262.complete
Subject Subject Range Query Range Percent Splice Strand
CG5577-RA 45..989 17..963 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:15:35 Download gff for BO06262.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17839820..17839982 802..963 98 <- Minus
3L 17840036..17840723 114..801 100 <- Minus
3L 17841287..17841383 17..113 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:36:51 Download gff for BO06262.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17832920..17833082 802..963 98 <- Minus
arm_3L 17833136..17833823 114..801 100 <- Minus
arm_3L 17834387..17834483 17..113 100   Minus

BO06262.pep Sequence

Translation from 16 to 979

> BO06262.pep
MSRGGAIDLTGLSEEQVSEWLQSFDTVLCDGDGTIWQDDTAIAGAPDVVN
ALQDRFDKKVYLITNNGLKTRQELFERSQRLGFHLPSDRHIISPTAAIAD
YLVGSPKFDRTRHKVYVVGNAAIARELRQRGIDSYGAGGTDELPPGDKWP
DFVTREFGNPEAAKDVGAVVVGWDEYFSYCKMARACHILCSNPDAAFLVT
NRDAVHKYPSFCIPGTGAFVAGIEACSEREALEMGKPNPLVLEPFIKAEG
LRTERTLMIGDCLKIDVGFASNCGMLSLLVGTGRYNNLSDVRLEKDRLPQ
PDFYLPRLGDLLNILASFLDH

BO06262.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG5577-PB 315 CG5577-PB 1..315 1..315 1668 100 Plus
CG5577-PA 315 CG5577-PA 1..315 1..315 1668 100 Plus
CG5567-PA 330 CG5567-PA 16..326 1..319 495 37.6 Plus
CG32488-PB 307 CG32488-PB 8..306 8..315 410 35 Plus
CG32488-PA 307 CG32488-PA 8..306 8..315 410 35 Plus