Clone BO06265 Report

Search the DGRC for BO06265

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:65
Vector:pDNR-Dual
Associated Gene/TranscriptCG12918-RA
Protein status:BO06265.pep: validated full length
Sequenced Size:601

Clone Sequence Records

BO06265.3prime Sequence

599 bp (598 high quality bases) assembled on 2005-12-03

> BO06265.3prime
ATGGTCTAGAAAGCTTGCCAGTTCCTCTTTGCCATCAAAGTCATACTCCT
CCTGGACCGGCGATTCGTCGCAGTAGCTCGCTTGTTCTGAGCAGATCTTG
ATGTCTAAATCGTTTCCGAGCTCTTCGGCCTGGAAGGCTTTAACGAAGAT
CTCATCGTTGTCCTCCAGTACTTCGTTGCAGAAGTGCCCCAGGCTTTTGT
TGAGATCACCATCTTGCACAAAGTCAACCAACGAGGAGTCTGGGTTCATC
TGACCATTGATGATCATCTTGAGGAGTGTGAATTTCCCGTTGCTCTTGTA
GGTTGCCTTCAAGTAGTCGTCCATTTTTTCGCAGATCTTCTCCATCAGTT
CGGTAAGGAACATTTCAGATTTCACTAGGCGAACTTTCTTGCTGATCGAA
TTTCCCTGTGCGTCCAGCCGGAATCCACTGACATCGGCCATCTTGTGGGG
GTCCTCCTTGGCAATGGCCTCCTCCAGTTCCGTAACCACGGCCTTGCACA
CGTGACACTTGACCTCGCGGGAGGTGAAGCTGTAACCTTGGGCCAAGGCC
AGCAGGCCGAACAGGATAAGCGCCTTCGTCAGCATGTCGACTGATAACT

BO06265.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG12918-PA 570 CG12918-RA 1..567 585..19 2835 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:02:48
Subject Length Description Subject Range Query Range Score Percent Strand
sel-RA 1012 CG12918-RA 282..848 585..19 2835 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:02:41
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10051026..10051339 19..332 1570 100 Plus
2R 25286936 2R 10051533..10051702 332..501 850 100 Plus
2R 25286936 2R 10051802..10051886 501..585 425 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:02:45 has no hits.

BO06265.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:38 Download gff for BO06265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12918-PA 1..570 18..585 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:30 Download gff for BO06265.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12918-PA 1..570 18..585 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:37 Download gff for BO06265.3prime
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..854 10..585 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:10:52 Download gff for BO06265.3prime
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..854 10..585 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:10:52 Download gff for BO06265.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 10051020..10051339 10..332 98 <- Plus
2R 10051534..10051701 333..500 100 <- Plus
2R 10051802..10051886 501..585 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:37 Download gff for BO06265.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5938525..5938844 10..332 98 <- Plus
arm_2R 5939039..5939206 333..500 100 <- Plus
arm_2R 5939307..5939391 501..585 100   Plus

BO06265.5prime Sequence

599 bp (598 high quality bases) assembled on 2005-12-03

> BO06265.5prime
GAAGTTATCAGTCGACATGCTGACGAAGGCGCTTATCCTGTTCGGCCTGC
TGGCCTTGGCCCAAGGTTACAGCTTCACCTCCCGCGAGGTCAAGTGTCAC
GTGTGCAAGGCCGTGGTTACGGAACTGGAGGAGGCCATTGCCAAGGAGGA
CCCCCACAAGATGGCCGATGTCAGTGGATTCCGGCTGGACGCACAGGGAA
ATTCGATCAGCAAGAAAGTTCGCCTAGTGAAATCTGAAATGTTCCTTACC
GAACTGATGGAGAAGATCTGCGAAAAAATGGACGACTACTTGAAGGCAAC
CTACAAGAGCAACGGGAAATTCACACTCCTCAAGATGATCATCAATGGTC
AGATGAACCCAGACTCCTCGTTGGTTGACTTTGTGCAAGATGGTGATCTC
AACAAAAGCCTGGGGCACTTCTGCAACGAAGTACTGGAGGACAACGATGA
GATCTTCGTTAAAGCCTTCCAGGCCGAAGAGCTCGGAAACGATTTAGACA
TCAAGATCTGCTCAGAACAAGCGAGCTACTGCGACGAATCGCCGGTCCAG
GAGGAGTATGACTTTGATGGCAAAGAGGAACTGGCAAGCTTTCTAGACC

BO06265.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG12918-PA 570 CG12918-RA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:14
Subject Length Description Subject Range Query Range Score Percent Strand
sel-RA 1012 CG12918-RA 282..848 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:11
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10051026..10051339 583..270 1570 100 Minus
2R 25286936 2R 10051533..10051702 270..101 850 100 Minus
2R 25286936 2R 10051802..10051886 101..17 425 100 Minus
Blast to na_te.dros performed on 2015-02-12 10:31:13 has no hits.

BO06265.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:39 Download gff for BO06265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12918-PA 1..570 17..584 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:32 Download gff for BO06265.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12918-PA 1..570 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:21 Download gff for BO06265.5prime
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..854 17..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:25 Download gff for BO06265.5prime
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..854 17..592 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:25 Download gff for BO06265.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 10051020..10051339 270..592 98 <- Minus
2R 10051534..10051701 102..269 100 <- Minus
2R 10051802..10051886 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:21 Download gff for BO06265.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5938525..5938844 270..592 98 <- Minus
arm_2R 5939039..5939206 102..269 100 <- Minus
arm_2R 5939307..5939391 17..101 100   Minus

BO06265.complete Sequence

601 bp (601 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630321

> BO06265.complete
GAAGTTATCAGTCGACATGCTGACGAAGGCGCTTATCCTGTTCGGCCTGC
TGGCCTTGGCCCAAGGTTACAGCTTCACCTCCCGCGAGGTCAAGTGTCAC
GTGTGCAAGGCCGTGGTTACGGAACTGGAGGAGGCCATTGCCAAGGAGGA
CCCCCACAAGATGGCCGATGTCAGTGGATTCCGGCTGGACGCACAGGGAA
ATTCGATCAGCAAGAAAGTTCGCCTAGTGAAATCTGAAATGTTCCTTACC
GAACTGATGGAGAAGATCTGCGAAAAAATGGACGACTACTTGAAGGCAAC
CTACAAGAGCAACGGGAAATTCACACTCCTCAAGATGATCATCAATGGTC
AGATGAACCCAGACTCCTCGTTGGTTGACTTTGTGCAAGATGGTGATCTC
AACAAAAGCCTGGGGCACTTCTGCAACGAAGTACTGGAGGACAACGATGA
GATCTTCGTTAAAGCCTTCCAGGCCGAAGAGCTCGGAAACGATTTAGACA
TCAAGATCTGCTCAGAACAAGCGAGCTACTGCGACGAATCGCCGGTCCAG
GAGGAGTATGACTTTGATGGCAAAGAGGAACTGGCAAGCTTTCTAGACCA
T

BO06265.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:22
Subject Length Description Subject Range Query Range Score Percent Strand
sel-RA 570 CG12918-PA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:23
Subject Length Description Subject Range Query Range Score Percent Strand
sel-RA 1012 CG12918-RA 282..848 17..583 2835 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 10051026..10051339 583..270 1570 100 Minus
2R 25286936 2R 10051533..10051702 270..101 850 100 Minus
2R 25286936 2R 10051802..10051886 101..17 425 100 Minus
Blast to na_te.dros performed on 2014-11-27 16:16:21 has no hits.

BO06265.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:44 Download gff for BO06265.complete
Subject Subject Range Query Range Percent Splice Strand
CG12918-RA 1..570 17..584 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:12 Download gff for BO06265.complete
Subject Subject Range Query Range Percent Splice Strand
CG12918-RA 247..819 17..592 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:39 Download gff for BO06265.complete
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..848 17..585 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:44 Download gff for BO06265.complete
Subject Subject Range Query Range Percent Splice Strand
CG12918-RA 247..819 17..592 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:50 Download gff for BO06265.complete
Subject Subject Range Query Range Percent Splice Strand
sel-RA 282..848 17..585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:50 Download gff for BO06265.complete
Subject Subject Range Query Range Percent Splice Strand
2R 10051024..10051339 270..585 99 <- Minus
2R 10051534..10051701 102..269 100 <- Minus
2R 10051802..10051886 17..101 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:39 Download gff for BO06265.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 5938529..5938844 270..585 99 <- Minus
arm_2R 5939039..5939206 102..269 100 <- Minus
arm_2R 5939307..5939391 17..101 100   Minus

BO06265.pep Sequence

Translation from 16 to 601

> BO06265.pep
MLTKALILFGLLALAQGYSFTSREVKCHVCKAVVTELEEAIAKEDPHKMA
DVSGFRLDAQGNSISKKVRLVKSEMFLTELMEKICEKMDDYLKATYKSNG
KFTLLKMIINGQMNPDSSLVDFVQDGDLNKSLGHFCNEVLEDNDEIFVKA
FQAEELGNDLDIKICSEQASYCDESPVQEEYDFDGKEELASFLDH

BO06265.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:20
Subject Length Description Subject Range Query Range Score Percent Strand
sel-PA 189 CG12918-PA 1..189 1..189 971 100 Plus