Clone Sequence Records
BO06265.3prime Sequence
599 bp (598 high quality bases) assembled on 2005-12-03
> BO06265.3prime
ATGGTCTAGAAAGCTTGCCAGTTCCTCTTTGCCATCAAAGTCATACTCCT
CCTGGACCGGCGATTCGTCGCAGTAGCTCGCTTGTTCTGAGCAGATCTTG
ATGTCTAAATCGTTTCCGAGCTCTTCGGCCTGGAAGGCTTTAACGAAGAT
CTCATCGTTGTCCTCCAGTACTTCGTTGCAGAAGTGCCCCAGGCTTTTGT
TGAGATCACCATCTTGCACAAAGTCAACCAACGAGGAGTCTGGGTTCATC
TGACCATTGATGATCATCTTGAGGAGTGTGAATTTCCCGTTGCTCTTGTA
GGTTGCCTTCAAGTAGTCGTCCATTTTTTCGCAGATCTTCTCCATCAGTT
CGGTAAGGAACATTTCAGATTTCACTAGGCGAACTTTCTTGCTGATCGAA
TTTCCCTGTGCGTCCAGCCGGAATCCACTGACATCGGCCATCTTGTGGGG
GTCCTCCTTGGCAATGGCCTCCTCCAGTTCCGTAACCACGGCCTTGCACA
CGTGACACTTGACCTCGCGGGAGGTGAAGCTGTAACCTTGGGCCAAGGCC
AGCAGGCCGAACAGGATAAGCGCCTTCGTCAGCATGTCGACTGATAACT
BO06265.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12918-PA | 570 | CG12918-RA | 1..567 | 585..19 | 2835 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sel-RA | 1012 | CG12918-RA | 282..848 | 585..19 | 2835 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:02:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10051026..10051339 | 19..332 | 1570 | 100 | Plus |
2R | 25286936 | 2R | 10051533..10051702 | 332..501 | 850 | 100 | Plus |
2R | 25286936 | 2R | 10051802..10051886 | 501..585 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:02:45 has no hits.
BO06265.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:38 Download gff for
BO06265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-PA | 1..570 | 18..585 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:30 Download gff for
BO06265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-PA | 1..570 | 18..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:37 Download gff for
BO06265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..854 | 10..585 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 03:10:52 Download gff for
BO06265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..854 | 10..585 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 03:10:52 Download gff for
BO06265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10051020..10051339 | 10..332 | 98 | <- | Plus |
2R | 10051534..10051701 | 333..500 | 100 | <- | Plus |
2R | 10051802..10051886 | 501..585 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:37 Download gff for
BO06265.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5938525..5938844 | 10..332 | 98 | <- | Plus |
arm_2R | 5939039..5939206 | 333..500 | 100 | <- | Plus |
arm_2R | 5939307..5939391 | 501..585 | 100 | | Plus |
BO06265.5prime Sequence
599 bp (598 high quality bases) assembled on 2005-12-03
> BO06265.5prime
GAAGTTATCAGTCGACATGCTGACGAAGGCGCTTATCCTGTTCGGCCTGC
TGGCCTTGGCCCAAGGTTACAGCTTCACCTCCCGCGAGGTCAAGTGTCAC
GTGTGCAAGGCCGTGGTTACGGAACTGGAGGAGGCCATTGCCAAGGAGGA
CCCCCACAAGATGGCCGATGTCAGTGGATTCCGGCTGGACGCACAGGGAA
ATTCGATCAGCAAGAAAGTTCGCCTAGTGAAATCTGAAATGTTCCTTACC
GAACTGATGGAGAAGATCTGCGAAAAAATGGACGACTACTTGAAGGCAAC
CTACAAGAGCAACGGGAAATTCACACTCCTCAAGATGATCATCAATGGTC
AGATGAACCCAGACTCCTCGTTGGTTGACTTTGTGCAAGATGGTGATCTC
AACAAAAGCCTGGGGCACTTCTGCAACGAAGTACTGGAGGACAACGATGA
GATCTTCGTTAAAGCCTTCCAGGCCGAAGAGCTCGGAAACGATTTAGACA
TCAAGATCTGCTCAGAACAAGCGAGCTACTGCGACGAATCGCCGGTCCAG
GAGGAGTATGACTTTGATGGCAAAGAGGAACTGGCAAGCTTTCTAGACC
BO06265.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12918-PA | 570 | CG12918-RA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sel-RA | 1012 | CG12918-RA | 282..848 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10051026..10051339 | 583..270 | 1570 | 100 | Minus |
2R | 25286936 | 2R | 10051533..10051702 | 270..101 | 850 | 100 | Minus |
2R | 25286936 | 2R | 10051802..10051886 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:31:13 has no hits.
BO06265.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:39 Download gff for
BO06265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-PA | 1..570 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:32 Download gff for
BO06265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-PA | 1..570 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:21 Download gff for
BO06265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..854 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:14:25 Download gff for
BO06265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..854 | 17..592 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:14:25 Download gff for
BO06265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10051020..10051339 | 270..592 | 98 | <- | Minus |
2R | 10051534..10051701 | 102..269 | 100 | <- | Minus |
2R | 10051802..10051886 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:21 Download gff for
BO06265.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5938525..5938844 | 270..592 | 98 | <- | Minus |
arm_2R | 5939039..5939206 | 102..269 | 100 | <- | Minus |
arm_2R | 5939307..5939391 | 17..101 | 100 | | Minus |
BO06265.complete Sequence
601 bp (601 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630321
> BO06265.complete
GAAGTTATCAGTCGACATGCTGACGAAGGCGCTTATCCTGTTCGGCCTGC
TGGCCTTGGCCCAAGGTTACAGCTTCACCTCCCGCGAGGTCAAGTGTCAC
GTGTGCAAGGCCGTGGTTACGGAACTGGAGGAGGCCATTGCCAAGGAGGA
CCCCCACAAGATGGCCGATGTCAGTGGATTCCGGCTGGACGCACAGGGAA
ATTCGATCAGCAAGAAAGTTCGCCTAGTGAAATCTGAAATGTTCCTTACC
GAACTGATGGAGAAGATCTGCGAAAAAATGGACGACTACTTGAAGGCAAC
CTACAAGAGCAACGGGAAATTCACACTCCTCAAGATGATCATCAATGGTC
AGATGAACCCAGACTCCTCGTTGGTTGACTTTGTGCAAGATGGTGATCTC
AACAAAAGCCTGGGGCACTTCTGCAACGAAGTACTGGAGGACAACGATGA
GATCTTCGTTAAAGCCTTCCAGGCCGAAGAGCTCGGAAACGATTTAGACA
TCAAGATCTGCTCAGAACAAGCGAGCTACTGCGACGAATCGCCGGTCCAG
GAGGAGTATGACTTTGATGGCAAAGAGGAACTGGCAAGCTTTCTAGACCA
T
BO06265.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:16:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sel-RA | 570 | CG12918-PA | 1..567 | 17..583 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:16:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sel-RA | 1012 | CG12918-RA | 282..848 | 17..583 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:16:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 10051026..10051339 | 583..270 | 1570 | 100 | Minus |
2R | 25286936 | 2R | 10051533..10051702 | 270..101 | 850 | 100 | Minus |
2R | 25286936 | 2R | 10051802..10051886 | 101..17 | 425 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:16:21 has no hits.
BO06265.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 14:12:44 Download gff for
BO06265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-RA | 1..570 | 17..584 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 05:31:12 Download gff for
BO06265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-RA | 247..819 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:51:39 Download gff for
BO06265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..848 | 17..585 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 14:12:44 Download gff for
BO06265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12918-RA | 247..819 | 17..592 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:14:50 Download gff for
BO06265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
sel-RA | 282..848 | 17..585 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:14:50 Download gff for
BO06265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 10051024..10051339 | 270..585 | 99 | <- | Minus |
2R | 10051534..10051701 | 102..269 | 100 | <- | Minus |
2R | 10051802..10051886 | 17..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:51:39 Download gff for
BO06265.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 5938529..5938844 | 270..585 | 99 | <- | Minus |
arm_2R | 5939039..5939206 | 102..269 | 100 | <- | Minus |
arm_2R | 5939307..5939391 | 17..101 | 100 | | Minus |
BO06265.pep Sequence
Translation from 16 to 601
> BO06265.pep
MLTKALILFGLLALAQGYSFTSREVKCHVCKAVVTELEEAIAKEDPHKMA
DVSGFRLDAQGNSISKKVRLVKSEMFLTELMEKICEKMDDYLKATYKSNG
KFTLLKMIINGQMNPDSSLVDFVQDGDLNKSLGHFCNEVLEDNDEIFVKA
FQAEELGNDLDIKICSEQASYCDESPVQEEYDFDGKEELASFLDH
BO06265.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:30:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
sel-PA | 189 | CG12918-PA | 1..189 | 1..189 | 971 | 100 | Plus |