Clone Sequence Records
BO06266.3prime Sequence
849 bp (847 high quality bases) assembled on 2005-12-03
> BO06266.3prime
ATGGTCTAGAAAGCTTGCGAAGCTCCTAAGGCAAAGATTGCAGTTGTTTC
CGCCTACTGCATTGTCGTGTCGGTGCAGCTCCAGGCTGAGGGGCTCCGTG
TCGTCCACCCAGGTCTCCAGGGTGCAGGAGCTGGACTGGTGGCTGGACTT
TTGCGACTGGGAGAGGGATCTGGTGGCCGCCGCCGCCTGCCGCCACCTGG
CTTCGAAGTCATCCCAGCGATCGCAGGCGTCGTCGTCCAGGGAGTTCCCG
TTGATGTCCCACTTAACAATGGGGAAGTCGTCGTGCGGTGGCTCCATGAT
CACCACGCTGTGGTAGTTGCCCTCCAGCTTGGAGCCCAGGCTGATACTGC
AGGGATGGTAGCGGCTGGGCGTGGGAATCCTTTGCTGCACTTGTTGTTTC
CTAGGAGTTGCCTGCTGCAGCACTTGCTGTTTCCGCGGAGTAGCCTGCTG
CTGCTGCTGCTGCTCTGGCTGCTCCTCCTTCTGTTCCTCCAGCTGCAGAT
CCAGACTGGAATTGGAGGGCGTGTGCCGCAGGTAGCGTACATTCGCCTTG
TATTTCACCCGCTCGAACTCGATGGTCGTTAGTGGTGTGTCCAACACCTC
GTAGTTGCCGCAGCTCATCATGTATTTGGTGCGCAGGTCATGCTTGGCCG
CTGGCTGCAGTTCCTCCACCTCCACCTCCTTGGAGGTGGCCAAGTCCAAG
GCCTGGTTGCACTCGCTCAGCTGCAGCTCTTCGTAGATGGCCTCCGTCAC
CGGACAGTTGCTGTTCACATCCAGCTCCAGATCTCGCTGCAGGTTGAGCT
CCTCCTCCACCTCCTCGTCGTCCCCGTCCTCCTCGTCCAGCCGCTGGAC
BO06266.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-PA | 912 | CG11191-RA | 79..909 | 849..19 | 4155 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-RB | 1459 | CG11191-RB | 235..1065 | 849..19 | 4155 | 100 | Minus |
CG11191-RA | 1300 | CG11191-RA | 235..1065 | 849..19 | 4155 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8000884..8001714 | 19..849 | 4155 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:21:05 has no hits.
BO06266.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:40 Download gff for
BO06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-PA | 79..912 | 16..849 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:34 Download gff for
BO06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-PA | 79..912 | 16..849 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:03 Download gff for
BO06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 235..1065 | 19..849 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:39:58 Download gff for
BO06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 235..1065 | 19..849 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:39:58 Download gff for
BO06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8000884..8001714 | 19..849 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:03 Download gff for
BO06266.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3888389..3889219 | 19..849 | 100 | | Plus |
BO06266.5prime Sequence
924 bp (830 high quality bases) assembled on 2005-12-03
> BO06266.5prime
GAAGTTATCAGTCGACATGTCGCACTTGCTGAGGCGCACCAAGAAGTCCT
GTCTGAAGTTCCTGCGCAAGATATCGACTTCAAAGCAGCTCTTTGTCCAG
CGGCTGGACGAGGAGGACGGGGACGACGAGGAGGTGGAGGAGGAGCTCAA
CCTGCAGCGAGATCTGGAGCTGGATGTGAACAGCAACTGTCCGGTGACGG
AGGCCATCTACGAAGAGCTGCAGCTGAGCGAGTGCAACCAGGCCTTGGAC
TTGGCCACCTCCAAGGAGGTGGAGGTGGAGGAACTGCAGCCAGCGGCCAA
GCATGACCTGCGCACCAAATACATGATGAGCTGCGGCAACTACGAGGTGT
TGGACACACCACTAACGACCATCGAGTTCGAGCGGGTGAAATACAAGGCG
AATGTACGCTACCTGCGGCACACGCCCTCCAATTCCAGTCTGGATCTGCA
GCTGGAGGAACAGAAGGAGGAGCAGCCAGAGCAGCAGCAGCAGCAGCAGG
CTACTCCGCGGAAACAGCAAGTGCTGCAGCAGGCAACTCCTAGGAAACAA
CAAGTGCAGCAAAGGATTCCCACGCCCAGCCGCTACCATCCCTGCAGTAT
CAGCCTGGGCTCCAAGCTGGAGGGCAACTACCACAGCGTGGTGATCATGG
AGCCACCGCACGACGACTTCCCCATTGTTAAGTGGGACATCAACGGGAAC
TCCCTGGACGACGACGCCTGCGATCGCTGGGATGACTTCGAAGCCAGGTG
GCGGCAGGCGGCGGCGGCCACCAGATCCCTCTCCCAGTCGCAAAAGTCCA
GCCACCAGTCCAGCTCCTGCACCCTGGAGACCTGGGTGGACGACNACGAG
CCCCTCAGCCTGGAGCTGCACCGACACGACNATGCAGTAGGCGGAAACAA
CTGCAATCTTTGCCTTANGAGCTT
BO06266.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-PA | 912 | CG11191-RA | 1..828 | 17..844 | 4140 | 100 | Plus |
CG11191-PA | 912 | CG11191-RA | 832..908 | 848..924 | 347 | 97.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-RB | 1459 | CG11191-RB | 156..1064 | 16..924 | 4478 | 99.6 | Plus |
CG11191-RA | 1300 | CG11191-RA | 156..1064 | 16..924 | 4478 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8000885..8001752 | 924..57 | 4277 | 99.4 | Minus |
2R | 25286936 | 2R | 8001923..8001965 | 58..16 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:02:49 has no hits.
BO06266.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:41 Download gff for
BO06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:35 Download gff for
BO06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-PA | 1..908 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:13 Download gff for
BO06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 143..1064 | 2..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:05 Download gff for
BO06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 143..1064 | 2..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:05 Download gff for
BO06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8000885..8001750 | 59..924 | 99 | <- | Minus |
2R | 8001923..8001978 | 2..58 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:13 Download gff for
BO06266.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3888390..3889255 | 59..924 | 99 | <- | Minus |
arm_2R | 3889428..3889483 | 2..58 | 91 | | Minus |
BO06266.complete Sequence
943 bp (943 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630322
> BO06266.complete
GAAGTTATCAGTCGACATGTCGCACTTGCTGAGGCGCACCAAGAAGTCCT
GTCTGAAGTTCCTGCGCAAGATATCGACTTCAAAGCAGCTCTTTGTCCAG
CGGCTGGACGAGGAGGACGGGGACGACGAGGAGGTGGAGGAGGAGCTCAA
CCTGCAGCGAGATCTGGAGCTGGATGTGAACAGCAACTGTCCGGTGACGG
AGGCCATCTACGAAGAGCTGCAGCTGAGCGAGTGCAACCAGGCCTTGGAC
TTGGCCACCTCCAAGGAGGTGGAGGTGGAGGAACTGCAGCCAGCGGCCAA
GCATGACCTGCGCACCAAATACATGATGAGCTGCGGCAACTACGAGGTGT
TGGACACACCACTAACGACCATCGAGTTCGAGCGGGTGAAATACAAGGCG
AATGTACGCTACCTGCGGCACACGCCCTCCAATTCCAGTCTGGATCTGCA
GCTGGAGGAACAGAAGGAGGAGCAGCCAGAGCAGCAGCAGCAGCAGCAGG
CTACTCCGCGGAAACAGCAAGTGCTGCAGCAGGCAACTCCTAGGAAACAA
CAAGTGCAGCAAAGGATTCCCACGCCCAGCCGCTACCATCCCTGCAGTAT
CAGCCTGGGCTCCAAGCTGGAGGGCAACTACCACAGCGTGGTGATCATGG
AGCCACCGCACGACGACTTCCCCATTGTTAAGTGGGACATCAACGGGAAC
TCCCTGGACGACGACGCCTGCGATCGCTGGGATGACTTCGAAGCCAGGTG
GCGGCAGGCGGCGGCGGCCACCAGATCCCTCTCCCAGTCGCAAAAGTCCA
GCCACCAGTCCAGCTCCTGCACCCTGGAGACCTGGGTGGACGACACGGAG
CCCCTCAGCCTGGAGCTGCACCGACACGACAATGCAGTAGGCGGAAACAA
CTGCAATCTTTGCCTTAGGAGCTTCGCAAGCTTTCTAGACCAT
BO06266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 06:40:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-RB | 912 | CG11191-PB | 1..909 | 17..925 | 4545 | 100 | Plus |
CG11191-RA | 912 | CG11191-PA | 1..909 | 17..925 | 4545 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 06:40:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-RB | 1459 | CG11191-RB | 156..1065 | 16..925 | 4550 | 100 | Plus |
CG11191-RA | 1300 | CG11191-RA | 156..1065 | 16..925 | 4550 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 06:40:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 8000884..8001752 | 925..57 | 4345 | 100 | Minus |
2R | 25286936 | 2R | 8001923..8001965 | 58..16 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 06:40:27 has no hits.
BO06266.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:00 Download gff for
BO06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 1..912 | 17..928 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:27 Download gff for
BO06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 143..1065 | 2..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:50:23 Download gff for
BO06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 157..1065 | 17..927 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:00 Download gff for
BO06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 143..1065 | 2..925 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:51:25 Download gff for
BO06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11191-RA | 157..1065 | 17..927 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 07:51:25 Download gff for
BO06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 8000881..8001750 | 59..927 | 99 | <- | Minus |
2R | 8001923..8001964 | 17..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:50:23 Download gff for
BO06266.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 3888386..3889255 | 59..927 | 99 | <- | Minus |
arm_2R | 3889428..3889469 | 17..58 | 100 | | Minus |
BO06266.pep Sequence
Translation from 16 to 943
> BO06266.pep
MSHLLRRTKKSCLKFLRKISTSKQLFVQRLDEEDGDDEEVEEELNLQRDL
ELDVNSNCPVTEAIYEELQLSECNQALDLATSKEVEVEELQPAAKHDLRT
KYMMSCGNYEVLDTPLTTIEFERVKYKANVRYLRHTPSNSSLDLQLEEQK
EEQPEQQQQQQATPRKQQVLQQATPRKQQVQQRIPTPSRYHPCSISLGSK
LEGNYHSVVIMEPPHDDFPIVKWDINGNSLDDDACDRWDDFEARWRQAAA
ATRSLSQSQKSSHQSSSCTLETWVDDTEPLSLELHRHDNAVGGNNCNLCL
RSFASFLDH
BO06266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11191-PB | 303 | CG11191-PB | 1..303 | 1..303 | 1594 | 100 | Plus |
CG11191-PA | 303 | CG11191-PA | 1..303 | 1..303 | 1594 | 100 | Plus |