Clone BO06270 Report

Search the DGRC for BO06270

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:70
Vector:pDNR-Dual
Associated Gene/TranscriptIlp2-RA
Protein status:BO06270.pep: validated full length
Sequenced Size:445

Clone Sequence Records

BO06270.5prime Sequence

443 bp (442 high quality bases) assembled on 2005-12-03

> BO06270.5prime
GAAGTTATCAGTCGACATGAGCAAGCCTTTGTCCTTCATCTCGATGGTGG
CCGTGATTTTGCTGGCCAGCTCCACAGTGAAGTTGGCCCAAGGAACGCTC
TGCAGTGAAAAGCTCAACGAGGTGCTGAGTATGGTGTGCGAGGAGTATAA
TCCCGTGATTCCACACAAGCGCGCCATGCCCGGTGCCGACAGCGATCTGG
ACGCCCTCAATCCCCTGCAGTTTGTCCAGGAGTTCGAGGAGGAGGATAAC
TCGATATCGGAACCGCTGCGAAGTGCCCTCTTTCCTGGGAGCTATCTTGG
GGGTGTACTCAATTCCCTGGCTGAAGTCCGGAGGCGAACTCGCCAACGGC
AAGGAATCGTGGAGAGGTGCTGCAAAAAGTCCTGTGATATGAAGGCTCTG
CGGGAGTACTGCTCCGTGGTCAGAAATGCAAGCTTTCTAGACC

BO06270.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG8167-PA 414 Ilp2-RA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:54:51
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp2-RA 670 CG8167-RA 66..477 16..427 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9800000..9800247 180..427 1240 100 Plus
3L 28110227 3L 9799763..9799926 16..179 820 100 Plus
Blast to na_te.dros performed 2015-02-12 06:54:48
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 4108..4145 193..230 109 76.3 Plus

BO06270.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:49 Download gff for BO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-PA 1..414 17..428 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:47 Download gff for BO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8167-PA 1..414 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:47 Download gff for BO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..482 9..433 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:28:34 Download gff for BO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..482 9..433 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:28:34 Download gff for BO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 9799757..9799926 9..179 97 -> Plus
3L 9800000..9800252 180..433 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:47 Download gff for BO06270.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9792857..9793026 9..179 97 -> Plus
arm_3L 9793100..9793352 180..433 98   Plus

BO06270.3prime Sequence

443 bp (442 high quality bases) assembled on 2005-12-03

> BO06270.3prime
ATGGTCTAGAAAGCTTGCATTTCTGACCACGGAGCAGTACTCCCGCAGAG
CCTTCATATCACAGGACTTTTTGCAGCACCTCTCCACGATTCCTTGCCGT
TGGCGAGTTCGCCTCCGGACTTCAGCCAGGGAATTGAGTACACCCCCAAG
ATAGCTCCCAGGAAAGAGGGCACTTCGCAGCGGTTCCGATATCGAGTTAT
CCTCCTCCTCGAACTCCTGGACAAACTGCAGGGGATTGAGGGCGTCCAGA
TCGCTGTCGGCACCGGGCATGGCGCGCTTGTGTGGAATCACGGGATTATA
CTCCTCGCACACCATACTCAGCACCTCGTTGAGCTTTTCACTGCAGAGCG
TTCCTTGGGCCAACTTCACTGTGGAGCTGGCCAGCAAAATCACGGCCACC
ATCGAGATGAAGGACAAAGGCTTGCTCATGTCGACTGATAACT

BO06270.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG8167-PA 414 Ilp2-RA 1..411 429..19 2055 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:36:21
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp2-RA 670 CG8167-RA 66..477 430..19 2060 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:36:17
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9800000..9800247 266..19 1240 100 Minus
3L 28110227 3L 9799763..9799926 430..267 820 100 Minus
Blast to na_te.dros performed 2015-02-11 22:36:19
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 4108..4145 253..216 109 76.3 Minus

BO06270.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:48 Download gff for BO06270.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-PA 1..414 18..429 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:45 Download gff for BO06270.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8167-PA 1..414 18..429 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:21 Download gff for BO06270.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..482 13..437 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:11:49 Download gff for BO06270.3prime
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..482 13..437 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:11:49 Download gff for BO06270.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 9799757..9799926 267..437 97 -> Minus
3L 9800000..9800252 13..266 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:21 Download gff for BO06270.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9792857..9793026 267..437 97 -> Minus
arm_3L 9793100..9793352 13..266 98   Minus

BO06270.complete Sequence

445 bp (445 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630323

> BO06270.complete
GAAGTTATCAGTCGACATGAGCAAGCCTTTGTCCTTCATCTCGATGGTGG
CCGTGATTTTGCTGGCCAGCTCCACAGTGAAGTTGGCCCAAGGAACGCTC
TGCAGTGAAAAGCTCAACGAGGTGCTGAGTATGGTGTGCGAGGAGTATAA
TCCCGTGATTCCACACAAGCGCGCCATGCCCGGTGCCGACAGCGATCTGG
ACGCCCTCAATCCCCTGCAGTTTGTCCAGGAGTTCGAGGAGGAGGATAAC
TCGATATCGGAACCGCTGCGAAGTGCCCTCTTTCCTGGGAGCTATCTTGG
GGGTGTACTCAATTCCCTGGCTGAAGTCCGGAGGCGAACTCGCCAACGGC
AAGGAATCGTGGAGAGGTGCTGCAAAAAGTCCTGTGATATGAAGGCTCTG
CGGGAGTACTGCTCCGTGGTCAGAAATGCAAGCTTTCTAGACCAT

BO06270.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:03
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp2-RA 414 CG8167-PA 1..411 17..427 2055 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:04
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp2-RA 670 CG8167-RA 66..477 16..427 2060 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9800000..9800247 180..427 1240 100 Plus
3L 28110227 3L 9799763..9799926 16..179 820 100 Plus
Blast to na_te.dros performed 2014-11-28 00:36:01
Subject Length Description Subject Range Query Range Score Percent Strand
diver2 4917 diver2 DIVER2 4917bp 4108..4145 193..230 109 76.3 Plus

BO06270.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:55:31 Download gff for BO06270.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 1..414 17..428 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:27:56 Download gff for BO06270.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..482 9..433 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:55:29 Download gff for BO06270.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 67..477 17..429 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:55:31 Download gff for BO06270.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 60..482 9..433 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:23:15 Download gff for BO06270.complete
Subject Subject Range Query Range Percent Splice Strand
Ilp2-RA 67..477 17..429 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:23:15 Download gff for BO06270.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9799764..9799926 17..179 100 -> Plus
3L 9800000..9800247 180..429 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:55:29 Download gff for BO06270.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9792864..9793026 17..179 100 -> Plus
arm_3L 9793100..9793347 180..429 99   Plus

BO06270.pep Sequence

Translation from 16 to 445

> BO06270.pep
MSKPLSFISMVAVILLASSTVKLAQGTLCSEKLNEVLSMVCEEYNPVIPH
KRAMPGADSDLDALNPLQFVQEFEEEDNSISEPLRSALFPGSYLGGVLNS
LAEVRRRTRQRQGIVERCCKKSCDMKALREYCSVVRNASFLDH

BO06270.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:18:09
Subject Length Description Subject Range Query Range Score Percent Strand
Ilp2-PA 137 CG8167-PA 1..137 1..137 696 100 Plus