Clone Sequence Records
BO06272.3prime Sequence
846 bp (796 high quality bases) assembled on 2005-12-03
> BO06272.3prime
ATGGTCTAGAAAGCTTGCCTTCAAATTTTCCATTATCCAGGAGCGGGCGC
GTCGGACATTCTGATAGACTTGAGTGGTAGCCTGTCCGGCATCTACGTTC
CGGACCAGAATGCCCACCAGGTAGAAGTTGTGCGGCTTCTCATCTCGCAC
ATCGATGTCCATCAGTGGTGCTCCCGGATAGAACTTGGTCCTCTTCACGG
GATAGCCGCACAGCTGGTTCACCGGTACTAGGACGCTGGAGGATGTCAAT
TGTTTGCACTTTTGAGTAGATACTGTCATGGCCAACCCCTTGCCCTTCTC
CGAGGCCATATGGTTGAATCCGGTGTAGTGCAGGTTGCGATTGGTCAGCG
TTTCCGGTTCCGAAGTGCCCTCCAAGCAGATCGGCTGAACCCAGTTGGTC
CACTCGACTGGTTTTTCCAGCCGAAGGATGGCCAAGTCGTTGTCCCCCGT
GTCCTTGTCCGTTTGCGGATGGACCTTGATCTCCACCACCTTGTACAGCT
CAGGCCCCGGCACACAGAAGTCCTTGTCGTTGCACGACAGCTCCTCCTCC
GGGGAGTCAGTCTCGTCCCAAACGCCCAACATTGCCACGGCTTTGGTGTC
TCCGGATCGTTGGCTAAAGCGCTTTACGCACGTCGCAGTACTGAGGATGT
GCAGCTCGTTAATAATAACTACGGAGCACCTTGTATTCTCGTACCGATTT
CCCTGATCCTCCAGCAGAATGCCCACCCAGGGATTCTCGGAGGGTTCCGC
CTGCTCGTTGGTGGTGTACAATAGCTTTTCATCCAGACGACCGCATCGAA
ATTCTGCCATCGTCAATGCGCCTAGCCAAGCCAGAGTCAAAAGCTG
BO06272.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31200-PA | 855 | CG31200-RA | 25..852 | 846..19 | 4140 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:03:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31200-RA | 915 | CG31200-RA | 40..867 | 846..19 | 4140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20744282..20744965 | 19..702 | 3420 | 100 | Plus |
3R | 32079331 | 3R | 20745086..20745204 | 701..819 | 595 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:03:18 has no hits.
BO06272.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:50 Download gff for
BO06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-PA | 25..855 | 18..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:49 Download gff for
BO06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-PA | 25..855 | 18..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:40 Download gff for
BO06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 40..867 | 19..846 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:40 Download gff for
BO06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 40..867 | 19..846 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:40 Download gff for
BO06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20744282..20744964 | 19..701 | 100 | <- | Plus |
3R | 20745087..20745203 | 702..818 | 100 | <- | Plus |
3R | 20745272..20745299 | 819..846 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:40 Download gff for
BO06272.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16570004..16570686 | 19..701 | 100 | <- | Plus |
arm_3R | 16570809..16570925 | 702..818 | 100 | <- | Plus |
arm_3R | 16570994..16571021 | 819..846 | 100 | | Plus |
BO06272.5prime Sequence
884 bp (823 high quality bases) assembled on 2005-12-03
> BO06272.5prime
GAAGTTATCAGTCGACATGCTTCACAGCGGAAAACTTGTTCAGCTTTTGA
CTCTGGCTTGGCTAGGCGCATTGACGATGGCAGAATTTCGATGCGGTCGT
CTGGATGAAAAGCTATTGTACACCACCAACGAGCAGGCGGAACCCTCCGA
GAATCCCTGGGTGGGCATTCTGCTGGAGGATCAGGGAAATCGGTACGAGA
ATACAAGGTGCTCCGTAGTTATTATTAACGAGCTGCACATCCTCAGTACT
GCGACGTGCGTAAAGCGCTTTAGCCAACGATCCGGAGACACCAAAGCCGT
GGCAATGTTGGGCGTTTGGGACGAGACTGACTCCCCGGAGGAGGAGCTGT
CGTGCAACGACAAGGACTTCTGTGTGCCGGGGCCTGAGCTGTACAAGGTG
GTGGAGATCAAGGTCCATCCGCAAACGGACAAGGACACGGGGGACAACGA
CTTGGCCATCCTTCGGCTGGAAAAACCAGTCGAGTGGACCAACTGGGTTC
AGCCGATCTGCTTGGAGGGCACTTCGGAACCGGAAACGCTGACCAATCGC
AACCTGCACTACACCGGATTCAACCATATGGCCTCGGAGAAGGGCAAGGG
GTTGGCCATGACAGTATCTACTCAAAAGTGCAAACAATTGACATCCTCCA
GCGTCCTAGTACCGGTGAACCAGCTGTGCGGCTATCCCGTGAAGAGGACC
AAGTTCTATCCGGGAGCACCACTGATGGACATCGATGTGCGAGATGAGAA
GCCGCACAACTTCTACCTGGTGGGCATTCTGGTCCGGAACGTAGATGCCG
GACAGGCTACCACTCAAGTCTATCAGAATGTCCGACGCGCCCGCTCCTGG
ATAATGGAAAAATTGAAGGCAAGCTTTCTAGACC
BO06272.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31200-PA | 855 | CG31200-RA | 1..852 | 17..868 | 4235 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:10:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31200-RA | 915 | CG31200-RA | 16..867 | 17..868 | 4245 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:10:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20744282..20744965 | 868..185 | 3405 | 99.9 | Minus |
3R | 32079331 | 3R | 20745086..20745204 | 186..68 | 595 | 100 | Minus |
3R | 32079331 | 3R | 20745272..20745323 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-09 19:10:05 has no hits.
BO06272.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:51 Download gff for
BO06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-PA | 1..855 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:50 Download gff for
BO06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-PA | 1..855 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:05:15 Download gff for
BO06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 8..867 | 8..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:17:40 Download gff for
BO06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 8..867 | 8..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:17:40 Download gff for
BO06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20745272..20745331 | 8..68 | 93 | | Minus |
3R | 20744282..20744964 | 186..868 | 99 | <- | Minus |
3R | 20745087..20745203 | 69..185 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:05:15 Download gff for
BO06272.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16570004..16570686 | 186..868 | 99 | <- | Minus |
arm_3R | 16570809..16570925 | 69..185 | 100 | <- | Minus |
arm_3R | 16570994..16571053 | 8..68 | 93 | | Minus |
BO06272.complete Sequence
886 bp (886 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630324
> BO06272.complete
GAAGTTATCAGTCGACATGCTTCACAGCGGAAAACTTGTTCAGCTTTTGA
CTCTGGCTTGGCTAGGCGCATTGACGATGGCAGAATTTCGATGCGGTCGT
CTGGATGAAAAGCTATTGTACACCACCAACGAGCAGGCGGAACCCTCCGA
GAATCCCTGGGTGGGCATTCTGCTGGAGGATCAGGGAAATCGGTACGAGA
ATACAAGGTGCTCCGTAGTTATTATTAACGAGCTGCACATCCTCAGTACT
GCGACGTGCGTAAAGCGCTTTAGCCAACGATCCGGAGACACCAAAGCCGT
GGCAATGTTGGGCGTTTGGGACGAGACTGACTCCCCGGAGGAGGAGCTGT
CGTGCAACGACAAGGACTTCTGTGTGCCGGGGCCTGAGCTGTACAAGGTG
GTGGAGATCAAGGTCCATCCGCAAACGGACAAGGACACGGGGGACAACGA
CTTGGCCATCCTTCGGCTGGAAAAACCAGTCGAGTGGACCAACTGGGTTC
AGCCGATCTGCTTGGAGGGCACTTCGGAACCGGAAACGCTGACCAATCGC
AACCTGCACTACACCGGATTCAACCATATGGCCTCGGAGAAGGGCAAGGG
GTTGGCCATGACAGTATCTACTCAAAAGTGCAAACAATTGACATCCTCCA
GCGTCCTAGTACCGGTGAACCAGCTGTGCGGCTATCCCGTGAAGAGGACC
AAGTTCTATCCGGGAGCACCACTGATGGACATCGATGTGCGAGATGAGAA
GCCGCACAACTTCTACCTGGTGGGCATTCTGGTCCGGAACGTAGATGCCG
GACAGGCTACCACTCAAGTCTATCAGAATGTCCGACGCGCCCGCTCCTGG
ATAATGGAAAATTTGAAGGCAAGCTTTCTAGACCAT
BO06272.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31200-RA | 855 | CG31200-PA | 1..852 | 17..868 | 4260 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31200-RA | 915 | CG31200-RA | 16..867 | 17..868 | 4260 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 20744282..20744965 | 868..185 | 3420 | 100 | Minus |
3R | 32079331 | 3R | 20745086..20745204 | 186..68 | 595 | 100 | Minus |
3R | 32079331 | 3R | 20745272..20745323 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:33:21 has no hits.
BO06272.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:01 Download gff for
BO06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 1..855 | 17..869 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:29 Download gff for
BO06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 8..867 | 8..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:01 Download gff for
BO06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 16..867 | 17..870 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:01 Download gff for
BO06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 8..867 | 8..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:43 Download gff for
BO06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG31200-RA | 16..867 | 17..870 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:43 Download gff for
BO06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 20744280..20744964 | 186..870 | 99 | <- | Minus |
3R | 20745087..20745203 | 69..185 | 100 | <- | Minus |
3R | 20745272..20745323 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:01 Download gff for
BO06272.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 16570002..16570686 | 186..870 | 99 | <- | Minus |
arm_3R | 16570809..16570925 | 69..185 | 100 | <- | Minus |
arm_3R | 16570994..16571045 | 17..68 | 100 | | Minus |
BO06272.pep Sequence
Translation from 16 to 886
> BO06272.pep
MLHSGKLVQLLTLAWLGALTMAEFRCGRLDEKLLYTTNEQAEPSENPWVG
ILLEDQGNRYENTRCSVVIINELHILSTATCVKRFSQRSGDTKAVAMLGV
WDETDSPEEELSCNDKDFCVPGPELYKVVEIKVHPQTDKDTGDNDLAILR
LEKPVEWTNWVQPICLEGTSEPETLTNRNLHYTGFNHMASEKGKGLAMTV
STQKCKQLTSSSVLVPVNQLCGYPVKRTKFYPGAPLMDIDVRDEKPHNFY
LVGILVRNVDAGQATTQVYQNVRRARSWIMENLKASFLDH
BO06272.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG31200-PA | 284 | CG31200-PA | 1..284 | 1..284 | 1510 | 100 | Plus |
CG31199-PA | 293 | CG31199-PA | 28..259 | 25..256 | 223 | 28.7 | Plus |
CG3505-PA | 360 | CG3505-PA | 86..360 | 14..285 | 190 | 27.3 | Plus |
CG31205-PC | 274 | CG31205-PC | 29..269 | 26..282 | 188 | 26 | Plus |
CG31205-PB | 274 | CG31205-PB | 29..269 | 26..282 | 188 | 26 | Plus |