Clone BO06272 Report

Search the DGRC for BO06272

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:72
Vector:pDNR-Dual
Associated Gene/TranscriptCG31200-RA
Protein status:BO06272.pep: validated full length
Sequenced Size:886

Clone Sequence Records

BO06272.3prime Sequence

846 bp (796 high quality bases) assembled on 2005-12-03

> BO06272.3prime
ATGGTCTAGAAAGCTTGCCTTCAAATTTTCCATTATCCAGGAGCGGGCGC
GTCGGACATTCTGATAGACTTGAGTGGTAGCCTGTCCGGCATCTACGTTC
CGGACCAGAATGCCCACCAGGTAGAAGTTGTGCGGCTTCTCATCTCGCAC
ATCGATGTCCATCAGTGGTGCTCCCGGATAGAACTTGGTCCTCTTCACGG
GATAGCCGCACAGCTGGTTCACCGGTACTAGGACGCTGGAGGATGTCAAT
TGTTTGCACTTTTGAGTAGATACTGTCATGGCCAACCCCTTGCCCTTCTC
CGAGGCCATATGGTTGAATCCGGTGTAGTGCAGGTTGCGATTGGTCAGCG
TTTCCGGTTCCGAAGTGCCCTCCAAGCAGATCGGCTGAACCCAGTTGGTC
CACTCGACTGGTTTTTCCAGCCGAAGGATGGCCAAGTCGTTGTCCCCCGT
GTCCTTGTCCGTTTGCGGATGGACCTTGATCTCCACCACCTTGTACAGCT
CAGGCCCCGGCACACAGAAGTCCTTGTCGTTGCACGACAGCTCCTCCTCC
GGGGAGTCAGTCTCGTCCCAAACGCCCAACATTGCCACGGCTTTGGTGTC
TCCGGATCGTTGGCTAAAGCGCTTTACGCACGTCGCAGTACTGAGGATGT
GCAGCTCGTTAATAATAACTACGGAGCACCTTGTATTCTCGTACCGATTT
CCCTGATCCTCCAGCAGAATGCCCACCCAGGGATTCTCGGAGGGTTCCGC
CTGCTCGTTGGTGGTGTACAATAGCTTTTCATCCAGACGACCGCATCGAA
ATTCTGCCATCGTCAATGCGCCTAGCCAAGCCAGAGTCAAAAGCTG

BO06272.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG31200-PA 855 CG31200-RA 25..852 846..19 4140 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:03:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31200-RA 915 CG31200-RA 40..867 846..19 4140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20744282..20744965 19..702 3420 100 Plus
3R 32079331 3R 20745086..20745204 701..819 595 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:03:18 has no hits.

BO06272.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:50 Download gff for BO06272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31200-PA 25..855 18..846 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:49 Download gff for BO06272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31200-PA 25..855 18..846 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:40 Download gff for BO06272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 40..867 19..846 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:51:40 Download gff for BO06272.3prime
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 40..867 19..846 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:51:40 Download gff for BO06272.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 20744282..20744964 19..701 100 <- Plus
3R 20745087..20745203 702..818 100 <- Plus
3R 20745272..20745299 819..846 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:40 Download gff for BO06272.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16570004..16570686 19..701 100 <- Plus
arm_3R 16570809..16570925 702..818 100 <- Plus
arm_3R 16570994..16571021 819..846 100   Plus

BO06272.5prime Sequence

884 bp (823 high quality bases) assembled on 2005-12-03

> BO06272.5prime
GAAGTTATCAGTCGACATGCTTCACAGCGGAAAACTTGTTCAGCTTTTGA
CTCTGGCTTGGCTAGGCGCATTGACGATGGCAGAATTTCGATGCGGTCGT
CTGGATGAAAAGCTATTGTACACCACCAACGAGCAGGCGGAACCCTCCGA
GAATCCCTGGGTGGGCATTCTGCTGGAGGATCAGGGAAATCGGTACGAGA
ATACAAGGTGCTCCGTAGTTATTATTAACGAGCTGCACATCCTCAGTACT
GCGACGTGCGTAAAGCGCTTTAGCCAACGATCCGGAGACACCAAAGCCGT
GGCAATGTTGGGCGTTTGGGACGAGACTGACTCCCCGGAGGAGGAGCTGT
CGTGCAACGACAAGGACTTCTGTGTGCCGGGGCCTGAGCTGTACAAGGTG
GTGGAGATCAAGGTCCATCCGCAAACGGACAAGGACACGGGGGACAACGA
CTTGGCCATCCTTCGGCTGGAAAAACCAGTCGAGTGGACCAACTGGGTTC
AGCCGATCTGCTTGGAGGGCACTTCGGAACCGGAAACGCTGACCAATCGC
AACCTGCACTACACCGGATTCAACCATATGGCCTCGGAGAAGGGCAAGGG
GTTGGCCATGACAGTATCTACTCAAAAGTGCAAACAATTGACATCCTCCA
GCGTCCTAGTACCGGTGAACCAGCTGTGCGGCTATCCCGTGAAGAGGACC
AAGTTCTATCCGGGAGCACCACTGATGGACATCGATGTGCGAGATGAGAA
GCCGCACAACTTCTACCTGGTGGGCATTCTGGTCCGGAACGTAGATGCCG
GACAGGCTACCACTCAAGTCTATCAGAATGTCCGACGCGCCCGCTCCTGG
ATAATGGAAAAATTGAAGGCAAGCTTTCTAGACC

BO06272.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:12
Subject Length Description Subject Range Query Range Score Percent Strand
CG31200-PA 855 CG31200-RA 1..852 17..868 4235 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-09 19:10:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG31200-RA 915 CG31200-RA 16..867 17..868 4245 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-09 19:10:01
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20744282..20744965 868..185 3405 99.9 Minus
3R 32079331 3R 20745086..20745204 186..68 595 100 Minus
3R 32079331 3R 20745272..20745323 68..17 260 100 Minus
Blast to na_te.dros performed on 2015-02-09 19:10:05 has no hits.

BO06272.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:51 Download gff for BO06272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31200-PA 1..855 17..869 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:50 Download gff for BO06272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31200-PA 1..855 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-13 04:05:15 Download gff for BO06272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 8..867 8..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-09 21:17:40 Download gff for BO06272.5prime
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 8..867 8..868 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-09 21:17:40 Download gff for BO06272.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 20745272..20745331 8..68 93   Minus
3R 20744282..20744964 186..868 99 <- Minus
3R 20745087..20745203 69..185 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-13 04:05:15 Download gff for BO06272.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16570004..16570686 186..868 99 <- Minus
arm_3R 16570809..16570925 69..185 100 <- Minus
arm_3R 16570994..16571053 8..68 93   Minus

BO06272.complete Sequence

886 bp (886 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630324

> BO06272.complete
GAAGTTATCAGTCGACATGCTTCACAGCGGAAAACTTGTTCAGCTTTTGA
CTCTGGCTTGGCTAGGCGCATTGACGATGGCAGAATTTCGATGCGGTCGT
CTGGATGAAAAGCTATTGTACACCACCAACGAGCAGGCGGAACCCTCCGA
GAATCCCTGGGTGGGCATTCTGCTGGAGGATCAGGGAAATCGGTACGAGA
ATACAAGGTGCTCCGTAGTTATTATTAACGAGCTGCACATCCTCAGTACT
GCGACGTGCGTAAAGCGCTTTAGCCAACGATCCGGAGACACCAAAGCCGT
GGCAATGTTGGGCGTTTGGGACGAGACTGACTCCCCGGAGGAGGAGCTGT
CGTGCAACGACAAGGACTTCTGTGTGCCGGGGCCTGAGCTGTACAAGGTG
GTGGAGATCAAGGTCCATCCGCAAACGGACAAGGACACGGGGGACAACGA
CTTGGCCATCCTTCGGCTGGAAAAACCAGTCGAGTGGACCAACTGGGTTC
AGCCGATCTGCTTGGAGGGCACTTCGGAACCGGAAACGCTGACCAATCGC
AACCTGCACTACACCGGATTCAACCATATGGCCTCGGAGAAGGGCAAGGG
GTTGGCCATGACAGTATCTACTCAAAAGTGCAAACAATTGACATCCTCCA
GCGTCCTAGTACCGGTGAACCAGCTGTGCGGCTATCCCGTGAAGAGGACC
AAGTTCTATCCGGGAGCACCACTGATGGACATCGATGTGCGAGATGAGAA
GCCGCACAACTTCTACCTGGTGGGCATTCTGGTCCGGAACGTAGATGCCG
GACAGGCTACCACTCAAGTCTATCAGAATGTCCGACGCGCCCGCTCCTGG
ATAATGGAAAATTTGAAGGCAAGCTTTCTAGACCAT

BO06272.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:33:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG31200-RA 855 CG31200-PA 1..852 17..868 4260 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:33:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG31200-RA 915 CG31200-RA 16..867 17..868 4260 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:33:19
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 20744282..20744965 868..185 3420 100 Minus
3R 32079331 3R 20745086..20745204 186..68 595 100 Minus
3R 32079331 3R 20745272..20745323 68..17 260 100 Minus
Blast to na_te.dros performed on 2014-11-27 20:33:21 has no hits.

BO06272.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:01 Download gff for BO06272.complete
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 1..855 17..869 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:29 Download gff for BO06272.complete
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 8..867 8..868 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:09:01 Download gff for BO06272.complete
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 16..867 17..870 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:01 Download gff for BO06272.complete
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 8..867 8..868 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:23:43 Download gff for BO06272.complete
Subject Subject Range Query Range Percent Splice Strand
CG31200-RA 16..867 17..870 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:23:43 Download gff for BO06272.complete
Subject Subject Range Query Range Percent Splice Strand
3R 20744280..20744964 186..870 99 <- Minus
3R 20745087..20745203 69..185 100 <- Minus
3R 20745272..20745323 17..68 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:09:01 Download gff for BO06272.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 16570002..16570686 186..870 99 <- Minus
arm_3R 16570809..16570925 69..185 100 <- Minus
arm_3R 16570994..16571045 17..68 100   Minus

BO06272.pep Sequence

Translation from 16 to 886

> BO06272.pep
MLHSGKLVQLLTLAWLGALTMAEFRCGRLDEKLLYTTNEQAEPSENPWVG
ILLEDQGNRYENTRCSVVIINELHILSTATCVKRFSQRSGDTKAVAMLGV
WDETDSPEEELSCNDKDFCVPGPELYKVVEIKVHPQTDKDTGDNDLAILR
LEKPVEWTNWVQPICLEGTSEPETLTNRNLHYTGFNHMASEKGKGLAMTV
STQKCKQLTSSSVLVPVNQLCGYPVKRTKFYPGAPLMDIDVRDEKPHNFY
LVGILVRNVDAGQATTQVYQNVRRARSWIMENLKASFLDH

BO06272.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG31200-PA 284 CG31200-PA 1..284 1..284 1510 100 Plus
CG31199-PA 293 CG31199-PA 28..259 25..256 223 28.7 Plus
CG3505-PA 360 CG3505-PA 86..360 14..285 190 27.3 Plus
CG31205-PC 274 CG31205-PC 29..269 26..282 188 26 Plus
CG31205-PB 274 CG31205-PB 29..269 26..282 188 26 Plus