Clone Sequence Records
BO06273.3prime Sequence
931 bp (828 high quality bases) assembled on 2005-12-03
> BO06273.3prime
ATGGTCTAGAAAGCTTGCGCACAAGCCACCTTCGTCCTCGGCGTCGTTGG
TTTCAGCAGCAGTGTCGCCAGCCTTCTTCTCCATCTGTATACCCTGAGGT
AGTGGAATGTTTTTAGATAGAATAGCGTACTCAACATCCATATGTCGTAT
GAATGGGGATGCCAGCATCCTAGCAGCTAACTCGGGATCCTCGTCATCGA
AGGCTTGCAGAAGGGTCTGCAGTGTGGACACTTCCTCTGGCTCGCAGCAG
TTTCCCCACTCCCTGAAGGTCTTTTCGGCTTCCACGGAATCCCCGCGAGC
CAGTTGGACCATCACCAAGGCCACAACTAGGCGTCCAATTTGTCCGTAAG
ATTCCGTTTGCTGATTCAAGCTGATCTCCTTTTTGAGCGCATTCGTGGCT
TCGTCGTACCTCCTTAGTTTGACCAGTATCCTGGAAACTTTTGATGCATA
CTCGGCTGCTTGACGGACGGAATCCTCGATCATTATGACTTCTAGAGCAT
GCTGATAGAAGCGCAAAGCCATGTCAGGATGCTTGGATTCAGTTAACTTG
GCGGCTTTATCCAAGGCGGATGCGGCTGCCTCTGGGGAACCGTGCTGTTG
ATACAAACTCGCCGATTTGTTGGCGTATTCCTCAACTTCGTGTAGCTTAT
CGGCATCCTTTGACAGCAAAATGATCTGTTCGTATGCCTTTGCAGCATGG
AACCAAGACTTGTTGTTTTTATAGGCGTCGATTGCCTTCAGAAAACACTC
CTTGCTCTTATCATAACTTTTAGCTATTCGATATGCAGTGGCAGCTTTGG
AATACTCATCCGCAGCACTATCGTAATCAGGAACCCATTTCAGCATGGAC
AACTTCAAGCTCTTCTCGGGCTGCTTCACCAGGTCCTCCGCTTCGGCAAT
CTTTTGGCAGCGATTCCCGACATGTCGACTG
BO06273.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3988-PA | 909 | gammaSnap-RA | 20..906 | 905..19 | 4410 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaSnap1-RA | 1117 | CG3988-RA | 71..976 | 923..19 | 4490 | 99.8 | Minus |
sei-RC | 3197 | CG3182-RC | 137..384 | 164..411 | 1240 | 100 | Plus |
gammaSnap2-RA | 1002 | CG6208-RA | 119..812 | 805..112 | 725 | 74 | Minus |
sei-RC | 3197 | CG3182-RC | 446..520 | 407..481 | 375 | 100 | Plus |
sei-RC | 3197 | CG3182-RC | 94..138 | 54..98 | 225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24047504..24047861 | 54..411 | 1790 | 100 | Plus |
2R | 25286936 | 2R | 24048066..24048262 | 481..677 | 985 | 100 | Plus |
3R | 32079331 | 3R | 10120589..10121282 | 112..805 | 725 | 73.6 | Plus |
2R | 25286936 | 2R | 24048335..24048451 | 676..792 | 585 | 100 | Plus |
2R | 25286936 | 2R | 24047923..24047997 | 407..481 | 375 | 100 | Plus |
2R | 25286936 | 2R | 24048639..24048708 | 792..861 | 350 | 100 | Plus |
2R | 25286936 | 2R | 24048769..24048833 | 860..923 | 260 | 96.9 | Plus |
Blast to na_te.dros performed on 2015-02-13 15:56:21 has no hits.
BO06273.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:52 Download gff for
BO06273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3988-PA | 1..909 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:52 Download gff for
BO06273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3988-PA | 1..909 | 15..923 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:11 Download gff for
BO06273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap-RA | 64..985 | 8..929 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:20:11 Download gff for
BO06273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap1-RA | 64..985 | 8..929 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:20:11 Download gff for
BO06273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24048769..24048840 | 860..929 | 93 | | Plus |
2R | 24047505..24047859 | 55..409 | 100 | <- | Plus |
2R | 24047926..24047996 | 410..480 | 100 | <- | Plus |
2R | 24048066..24048260 | 481..675 | 100 | <- | Plus |
2R | 24047277..24047321 | 8..54 | 91 | <- | Plus |
2R | 24048335..24048450 | 676..791 | 100 | <- | Plus |
2R | 24048639..24048706 | 792..859 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:11 Download gff for
BO06273.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19934800..19934844 | 8..54 | 91 | <- | Plus |
arm_2R | 19935028..19935382 | 55..409 | 100 | <- | Plus |
arm_2R | 19935449..19935519 | 410..480 | 100 | <- | Plus |
arm_2R | 19935589..19935783 | 481..675 | 100 | <- | Plus |
arm_2R | 19935858..19935973 | 676..791 | 100 | <- | Plus |
arm_2R | 19936162..19936229 | 792..859 | 100 | <- | Plus |
arm_2R | 19936292..19936363 | 860..929 | 93 | | Plus |
BO06273.5prime Sequence
887 bp (730 high quality bases) assembled on 2005-12-03
> BO06273.5prime
GAAGTTATCAGTCGACATGTCGGGAATCGCTGCCAAAAAGATTGCCGAAG
CGGAGGACCTGGTGAAGCAGGCCGAGAAGAGCTTGAAGTTGTCCATGCTG
AAATGGGTTCCTGATTACGATAGTGCTGCGGATGAGTATTCCAAAGCTGC
CACTGCATATCGAATAGCTAAAAGTTATGATAAGAGCAAGGAGTGTTTTC
TGAAGGCAATCGACGCCTATAAAAACAACAAGTCTTGGTTCCATGCTGCA
AAGGCATACGAACAGATCATTTTGCTGTCAAAGGATGCCGATAAGCTACA
CGAAGTTGAGGAATACGCCAACAAATCGGCGAGTTTGTATCAACAGCACG
GTTCCCCAGAGGCAGCCGCATCCGCCTTGGATAAAGCCGCCAAGTTAACT
GAATCCAAGCATCCTGACATGGCTTTGCGCTTCTATCAGCATGCTCTAGA
AGTCATAATGATCGAGGATTCCGTCCGTCAAGCAGCCGAGTATGCATCAA
AAGTTTCCAGGATACTGGTCAAACTAAGGAGGTACGACGAAGCCACGAAT
GCGCTCAAAAAGGAGATCAGCTTGAATCAGCAAACGGAATCTTACGGACA
AATTGGACGCCTAGTTGTGGCCTTGGTGATGGTCCAACTGGCTCGCGGGG
ATTCCGTGGAAGCCGAAAAGACCTTCAGGGAGTGGGGAAACTGCTGCGAG
CCAGAGGAAGTGTCCACACTGCAGACCCTTCTGTCAGCCTTCGATGACGA
GGATCCCGAGTTAGCTGCTAGGATGCTGGCATCCCCATTCATACGACATA
TGGATGTTGAGTACGCTATTCTATCTAAAAACATTCCACTACCTCAGGGT
ATACAGATGGGAGAGAAGGCTGGCGACACTGCTGCTG
BO06273.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3988-PA | 909 | gammaSnap-RA | 1..844 | 17..860 | 4170 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:02:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaSnap1-RA | 1117 | CG3988-RA | 71..941 | 17..887 | 4280 | 99.5 | Plus |
sei-RC | 3197 | CG3182-RC | 137..384 | 777..530 | 1210 | 99.2 | Minus |
gammaSnap2-RA | 1002 | CG6208-RA | 119..812 | 136..829 | 710 | 73.9 | Plus |
sei-RC | 3197 | CG3182-RC | 446..520 | 534..460 | 375 | 100 | Minus |
sei-RC | 3197 | CG3182-RC | 94..138 | 887..843 | 180 | 95.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24047504..24047861 | 887..530 | 1715 | 98.6 | Minus |
2R | 25286936 | 2R | 24048066..24048262 | 460..264 | 985 | 100 | Minus |
3R | 32079331 | 3R | 10120589..10121282 | 829..136 | 710 | 73.5 | Minus |
2R | 25286936 | 2R | 24048335..24048451 | 265..149 | 585 | 100 | Minus |
2R | 25286936 | 2R | 24047923..24047997 | 534..460 | 375 | 100 | Minus |
2R | 25286936 | 2R | 24048639..24048708 | 149..80 | 350 | 100 | Minus |
2R | 25286936 | 2R | 24048769..24048833 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:02:54 has no hits.
BO06273.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:53 Download gff for
BO06273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3988-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:53 Download gff for
BO06273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3988-PA | 1..871 | 17..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:15 Download gff for
BO06273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap-RA | 64..941 | 11..887 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:21 Download gff for
BO06273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap1-RA | 64..941 | 11..887 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:21 Download gff for
BO06273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24047504..24047859 | 532..887 | 98 | <- | Minus |
2R | 24047926..24047996 | 461..531 | 100 | <- | Minus |
2R | 24048066..24048260 | 266..460 | 100 | <- | Minus |
2R | 24048335..24048450 | 150..265 | 100 | <- | Minus |
2R | 24048639..24048706 | 82..149 | 100 | <- | Minus |
2R | 24048769..24048840 | 11..81 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:15 Download gff for
BO06273.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19935027..19935382 | 532..887 | 98 | <- | Minus |
arm_2R | 19935449..19935519 | 461..531 | 100 | <- | Minus |
arm_2R | 19935589..19935783 | 266..460 | 100 | <- | Minus |
arm_2R | 19935858..19935973 | 150..265 | 100 | <- | Minus |
arm_2R | 19936162..19936229 | 82..149 | 100 | <- | Minus |
arm_2R | 19936292..19936363 | 11..81 | 95 | | Minus |
BO06273.complete Sequence
940 bp (940 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630325
> BO06273.complete
GAAGTTATCAGTCGACATGTCGGGAATCGCTGCCAAAAAGATTGCCGAAG
CGGAGGACCTGGTGAAGCAGGCCGAGAAGAGCTTGAAGTTGTCCATGCTG
AAATGGGTTCCTGATTACGATAGTGCTGCGGATGAGTATTCCAAAGCTGC
CACTGCATATCGAATAGCTAAAAGTTATGATAAGAGCAAGGAGTGTTTTC
TGAAGGCAATCGACGCCTATAAAAACAACAAGTCTTGGTTCCATGCTGCA
AAGGCATACGAACAGATCATTTTGCTGTCAAAGGATGCCGATAAGCTACA
CGAAGTTGAGGAATACGCCAACAAATCGGCGAGTTTGTATCAACAGCACG
GTTCCCCAGAGGCAGCCGCATCCGCCTTGGATAAAGCCGCCAAGTTAACT
GAATCCAAGCATCCTGACATGGCTTTGCGCTTCTATCAGCATGCTCTAGA
AGTCATAATGATCGAGGATTCCGTCCGTCAAGCAGCCGAGTATGCATCAA
AAGTTTCCAGGATACTGGTCAAACTAAGGAGGTACGACGAAGCCACGAAT
GCGCTCAAAAAGGAGATCAGCTTGAATCAGCAAACGGAATCTTACGGACA
AATTGGACGCCTAGTTGTGGCCTTGGTGATGGTCCAACTGGCTCGCGGGG
ATTCCGTGGAAGCCGAAAAGACCTTCAGGGAGTGGGGAAACTGCTGCGAG
CCAGAGGAAGTGTCCACACTGCAGACCCTTCTGCAAGCCTTCGATGACGA
GGATCCCGAGTTAGCTGCTAGGATGCTGGCATCCCCATTCATACGACATA
TGGATGTTGAGTACGCTATTCTATCTAAAAACATTCCACTACCTCAGGGT
ATACAGATGGAGAAGAAGGCTGGCGACACTGCTGCTGAAACCAACGACGC
CGAGGACGAAGGTGGCTTGTGCGCAAGCTTTCTAGACCAT
BO06273.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 00:56:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaSnap1-RA | 909 | CG3988-PA | 1..906 | 17..922 | 4530 | 100 | Plus |
gammaSnap2-RA | 852 | CG6208-PA | 93..786 | 136..829 | 725 | 73.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 00:56:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaSnap1-RA | 1117 | CG3988-RA | 71..976 | 17..922 | 4530 | 100 | Plus |
sei-RC | 3197 | CG3182-RC | 137..384 | 777..530 | 1240 | 100 | Minus |
gammaSnap2-RA | 1002 | CG6208-RA | 119..812 | 136..829 | 725 | 73.6 | Plus |
sei-RC | 3197 | CG3182-RC | 446..520 | 534..460 | 375 | 100 | Minus |
sei-RC | 3197 | CG3182-RC | 94..138 | 887..843 | 225 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 00:56:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24047504..24047861 | 887..530 | 1790 | 100 | Minus |
2R | 25286936 | 2R | 24048066..24048262 | 460..264 | 985 | 100 | Minus |
3R | 32079331 | 3R | 10120589..10121282 | 829..136 | 725 | 73.6 | Minus |
2R | 25286936 | 2R | 24048335..24048451 | 265..149 | 585 | 100 | Minus |
2R | 25286936 | 2R | 24047923..24047997 | 534..460 | 375 | 100 | Minus |
2R | 25286936 | 2R | 24048639..24048708 | 149..80 | 350 | 100 | Minus |
2R | 25286936 | 2R | 24048769..24048833 | 81..17 | 325 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 00:56:15 has no hits.
BO06273.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:02 Download gff for
BO06273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap-RA | 1..909 | 17..926 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:33 Download gff for
BO06273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap-RA | 50..971 | 11..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 04:39:12 Download gff for
BO06273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap-RA | 71..976 | 17..924 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:03 Download gff for
BO06273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap-RA | 50..971 | 11..933 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:14:06 Download gff for
BO06273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
gammaSnap1-RA | 71..976 | 17..924 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:14:06 Download gff for
BO06273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24047926..24047996 | 461..531 | 100 | <- | Minus |
2R | 24048066..24048260 | 266..460 | 100 | <- | Minus |
2R | 24048335..24048450 | 150..265 | 100 | <- | Minus |
2R | 24048639..24048706 | 82..149 | 100 | <- | Minus |
2R | 24048769..24048833 | 17..81 | 100 | | Minus |
2R | 24047284..24047321 | 887..924 | 94 | <- | Minus |
2R | 24047505..24047859 | 532..886 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 04:39:12 Download gff for
BO06273.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 19935449..19935519 | 461..531 | 100 | <- | Minus |
arm_2R | 19935589..19935783 | 266..460 | 100 | <- | Minus |
arm_2R | 19935858..19935973 | 150..265 | 100 | <- | Minus |
arm_2R | 19936162..19936229 | 82..149 | 100 | <- | Minus |
arm_2R | 19936292..19936356 | 17..81 | 100 | | Minus |
arm_2R | 19934807..19934844 | 887..924 | 94 | <- | Minus |
arm_2R | 19935028..19935382 | 532..886 | 100 | <- | Minus |
BO06273.pep Sequence
Translation from 16 to 940
> BO06273.pep
MSGIAAKKIAEAEDLVKQAEKSLKLSMLKWVPDYDSAADEYSKAATAYRI
AKSYDKSKECFLKAIDAYKNNKSWFHAAKAYEQIILLSKDADKLHEVEEY
ANKSASLYQQHGSPEAAASALDKAAKLTESKHPDMALRFYQHALEVIMIE
DSVRQAAEYASKVSRILVKLRRYDEATNALKKEISLNQQTESYGQIGRLV
VALVMVQLARGDSVEAEKTFREWGNCCEPEEVSTLQTLLQAFDDEDPELA
ARMLASPFIRHMDVEYAILSKNIPLPQGIQMEKKAGDTAAETNDAEDEGG
LCASFLDH
BO06273.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
gammaSnap1-PA | 302 | CG3988-PA | 1..302 | 1..302 | 1524 | 100 | Plus |
gammaSnap2-PA | 283 | CG6208-PA | 1..282 | 1..290 | 991 | 67.3 | Plus |