Clone BO06274 Report

Search the DGRC for BO06274

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:74
Vector:pDNR-Dual
Associated Gene/Transcript
Protein status:BO06274.pep: validated full length
Sequenced Size:385

Clone Sequence Records

BO06274.5prime Sequence

383 bp (382 high quality bases) assembled on 2005-12-03

> BO06274.5prime
GAAGTTATCAGTCGACATGGACGTGGATTCTGGTGTTCCAAGATGTTCCA
TTCGGCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAAT
ATCTTATCTAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTA
TAGCTGTAGAAATATAACCCATACCAATATCAGTAACTACACCCACACCC
ACAACCACAGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAA
GGGAAAACCAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTT
TCCTTTGGCGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAAC
TCGAACTCAAACTACAAGCAAGCTTTCTAGACC

BO06274.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-PA 354 CG11509-RA 1..351 17..367 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:48
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-RA 742 CG11509-RA 213..563 17..367 1755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:43
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1652533..1652883 17..367 1755 100 Plus
Blast to na_te.dros performed 2015-02-12 01:28:45
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 1932..1984 191..244 114 70.4 Plus

BO06274.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:55 Download gff for BO06274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-PA 1..354 17..371 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:55 Download gff for BO06274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-PA 1..354 17..371 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:32 Download gff for BO06274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 211..566 14..371 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:49:32 Download gff for BO06274.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 211..566 14..371 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:49:32 Download gff for BO06274.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1652531..1652886 14..371 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:32 Download gff for BO06274.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1546564..1546919 14..371 99   Plus

BO06274.3prime Sequence

383 bp (382 high quality bases) assembled on 2005-12-03

> BO06274.3prime
ATGGTCTAGAAAGCTTGCTTGTAGTTTGAGTTCGAGTTCAAGTTCGAGCT
TATGGGAAAAACAATTCGAAATTGTCGCCAAAGGAAACTTCTGTCTGTTG
CTTTTTGTATTCATACTACTGCTGTTGGTTTTCCCTTTTGAATTCTGACT
TGATCTTCGATCGGTGTGGCTGTGGCTGTGGTTGTGGGTGTGGGTGTAGT
TACTGATATTGGTATGGGTTATATTTCTACAGCTATAAGTATGCAAGCGT
TTGTGTACGAGTGAGTGTTTCCAACTAGATAAGATATTTAACTGATTTGG
CTTGTCCTTGATCCTGAGCGTAGAAAGGAGCCGAATGGAACATCTTGGAA
CACCAGAATCCACGTCCATGTCGACTGATAACT

BO06274.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-PA 354 CG11509-RA 1..351 369..19 1755 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-RA 742 CG11509-RA 213..563 369..19 1755 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:54
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1652533..1652883 369..19 1755 100 Minus
Blast to na_te.dros performed 2015-02-13 06:06:55
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 1932..1984 195..142 114 70.4 Minus

BO06274.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:54 Download gff for BO06274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-PA 1..354 15..369 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:54 Download gff for BO06274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-PA 1..354 15..369 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:26 Download gff for BO06274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 211..566 15..372 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:17 Download gff for BO06274.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 211..566 15..372 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:17 Download gff for BO06274.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1652531..1652886 15..372 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:26 Download gff for BO06274.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1546564..1546919 15..372 99   Minus

BO06274.complete Sequence

385 bp (385 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630326

> BO06274.complete
GAAGTTATCAGTCGACATGGACGTGGATTCTGGTGTTCCAAGATGTTCCA
TTCGGCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAAT
ATCTTATCTAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTA
TAGCTGTAGAAATATAACCCATACCAATATCAGTAACTACACCCACACCC
ACAACCACAGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAA
GGGAAAACCAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTT
TCCTTTGGCGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAAC
TCGAACTCAAACTACAAGCAAGCTTTCTAGACCAT

BO06274.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-RA 354 CG11509-PA 1..351 17..367 1755 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-RA 742 CG11509-RA 213..563 17..367 1755 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:59
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1652533..1652883 17..367 1755 100 Plus
Blast to na_te.dros performed 2014-11-27 16:21:00
Subject Length Description Subject Range Query Range Score Percent Strand
BS 5142 BS BS 5142bp 1932..1984 191..244 114 70.4 Plus

BO06274.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 22:25:04 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:07 Download gff for BO06274.complete
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 213..563 17..369 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:25:04 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:31 Download gff for BO06274.complete
Subject Subject Range Query Range Percent Splice Strand
CG11509-RA 213..563 17..369 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:31 Download gff for BO06274.complete
Subject Subject Range Query Range Percent Splice Strand
X 1652533..1652883 17..369 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:07 Download gff for BO06274.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 1546566..1546916 17..369 99   Plus

BO06274.pep Sequence

Translation from 16 to 385

> BO06274.pep
MDVDSGVPRCSIRLLSTLRIKDKPNQLNILSSWKHSLVHKRLHTYSCRNI
THTNISNYTHTHNHSHSHTDRRSSQNSKGKTNSSSMNTKSNRQKFPLATI
SNCFSHKLELELELKLQASFLDH

BO06274.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG11509-PA 117 CG11509-PA 1..117 1..117 620 100 Plus