Clone Sequence Records
BO06274.5prime Sequence
383 bp (382 high quality bases) assembled on 2005-12-03
> BO06274.5prime
GAAGTTATCAGTCGACATGGACGTGGATTCTGGTGTTCCAAGATGTTCCA
TTCGGCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAAT
ATCTTATCTAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTA
TAGCTGTAGAAATATAACCCATACCAATATCAGTAACTACACCCACACCC
ACAACCACAGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAA
GGGAAAACCAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTT
TCCTTTGGCGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAAC
TCGAACTCAAACTACAAGCAAGCTTTCTAGACC
BO06274.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-PA | 354 | CG11509-RA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-RA | 742 | CG11509-RA | 213..563 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1652533..1652883 | 17..367 | 1755 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:28:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS | 5142 | BS BS 5142bp | 1932..1984 | 191..244 | 114 | 70.4 | Plus |
BO06274.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:55 Download gff for
BO06274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-PA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:55 Download gff for
BO06274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-PA | 1..354 | 17..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:32 Download gff for
BO06274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 211..566 | 14..371 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:49:32 Download gff for
BO06274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 211..566 | 14..371 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:49:32 Download gff for
BO06274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1652531..1652886 | 14..371 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:32 Download gff for
BO06274.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1546564..1546919 | 14..371 | 99 | | Plus |
BO06274.3prime Sequence
383 bp (382 high quality bases) assembled on 2005-12-03
> BO06274.3prime
ATGGTCTAGAAAGCTTGCTTGTAGTTTGAGTTCGAGTTCAAGTTCGAGCT
TATGGGAAAAACAATTCGAAATTGTCGCCAAAGGAAACTTCTGTCTGTTG
CTTTTTGTATTCATACTACTGCTGTTGGTTTTCCCTTTTGAATTCTGACT
TGATCTTCGATCGGTGTGGCTGTGGCTGTGGTTGTGGGTGTGGGTGTAGT
TACTGATATTGGTATGGGTTATATTTCTACAGCTATAAGTATGCAAGCGT
TTGTGTACGAGTGAGTGTTTCCAACTAGATAAGATATTTAACTGATTTGG
CTTGTCCTTGATCCTGAGCGTAGAAAGGAGCCGAATGGAACATCTTGGAA
CACCAGAATCCACGTCCATGTCGACTGATAACT
BO06274.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-PA | 354 | CG11509-RA | 1..351 | 369..19 | 1755 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:06:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-RA | 742 | CG11509-RA | 213..563 | 369..19 | 1755 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:06:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1652533..1652883 | 369..19 | 1755 | 100 | Minus |
Blast to na_te.dros performed 2015-02-13 06:06:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS | 5142 | BS BS 5142bp | 1932..1984 | 195..142 | 114 | 70.4 | Minus |
BO06274.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:54 Download gff for
BO06274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-PA | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:54 Download gff for
BO06274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-PA | 1..354 | 15..369 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:26 Download gff for
BO06274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 211..566 | 15..372 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:05:17 Download gff for
BO06274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 211..566 | 15..372 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:05:17 Download gff for
BO06274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1652531..1652886 | 15..372 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:26 Download gff for
BO06274.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1546564..1546919 | 15..372 | 99 | | Minus |
BO06274.complete Sequence
385 bp (385 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630326
> BO06274.complete
GAAGTTATCAGTCGACATGGACGTGGATTCTGGTGTTCCAAGATGTTCCA
TTCGGCTCCTTTCTACGCTCAGGATCAAGGACAAGCCAAATCAGTTAAAT
ATCTTATCTAGTTGGAAACACTCACTCGTACACAAACGCTTGCATACTTA
TAGCTGTAGAAATATAACCCATACCAATATCAGTAACTACACCCACACCC
ACAACCACAGCCACAGCCACACCGATCGAAGATCAAGTCAGAATTCAAAA
GGGAAAACCAACAGCAGTAGTATGAATACAAAAAGCAACAGACAGAAGTT
TCCTTTGGCGACAATTTCGAATTGTTTTTCCCATAAGCTCGAACTTGAAC
TCGAACTCAAACTACAAGCAAGCTTTCTAGACCAT
BO06274.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:21:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-RA | 354 | CG11509-PA | 1..351 | 17..367 | 1755 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:21:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-RA | 742 | CG11509-RA | 213..563 | 17..367 | 1755 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:20:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1652533..1652883 | 17..367 | 1755 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 16:21:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
BS | 5142 | BS BS 5142bp | 1932..1984 | 191..244 | 114 | 70.4 | Plus |
BO06274.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 22:25:04 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:52:07 Download gff for
BO06274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 213..563 | 17..369 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed on 2008-07-21 22:25:04 has no hits.
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:16:31 Download gff for
BO06274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11509-RA | 213..563 | 17..369 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:16:31 Download gff for
BO06274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1652533..1652883 | 17..369 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:52:07 Download gff for
BO06274.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1546566..1546916 | 17..369 | 99 | | Plus |
BO06274.pep Sequence
Translation from 16 to 385
> BO06274.pep
MDVDSGVPRCSIRLLSTLRIKDKPNQLNILSSWKHSLVHKRLHTYSCRNI
THTNISNYTHTHNHSHSHTDRRSSQNSKGKTNSSSMNTKSNRQKFPLATI
SNCFSHKLELELELKLQASFLDH
BO06274.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11509-PA | 117 | CG11509-PA | 1..117 | 1..117 | 620 | 100 | Plus |