Clone BO06275 Report

Search the DGRC for BO06275

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:75
Vector:pDNR-Dual
Associated Gene/TranscriptCG30281-RA
Protein status:BO06275.pep: validated full length
Sequenced Size:907

Clone Sequence Records

BO06275.3prime Sequence

838 bp (836 high quality bases) assembled on 2005-12-03

> BO06275.3prime
ATGGTCTAGAAAGCTTGCATGGGCGTTTAAGGCATTTTGCATGCCCTGCC
TTCGTAGGTTGTTGGAACACTTGGGTCTGATCATCATTTGTACGAATTTG
TAGCCGTAGTCGTAGCCACGCCAGCTCATCCAGGTGATTCCACGACCCGA
CATCTTCGGCTCGAATCGACCTCCTTCCAAATATTGGCCATTGAGGTTGC
TCCTCTGGCACTGATCATACCACCAGGCCCCCACATAAATCCTGGCGCAT
CCGTGACCCGTATCATCGTGATCGAATGTGGAGAAGGGCATTCCCTTGTG
GTACCTTAACGAATCACCGGCGTCTCCCGAGTATTTACCCAAAACAGATA
GCGCATAGGACGCTGATGCATTCCCAATGGCAAAATCCTCGTATCGAGCA
TCATGTACCACTCCATTGAAATCTTCCATATAGACAAACAGCTCGTAAGG
CTCCGCGGTTGTTAGGAAGTGTAGCTTTTCCAGACCCATAAAGAATTCTC
CGCTAAGCTCCCCAAATCCTTGGCTATACTCCTCCCAACAGCGATAGAAG
TTTTCACTGCCATCCTGTCGTCGCTGAATTACAGTCCATCCAGATCCCGC
CAGCCGAGTGTCACAATAAACCGGAAAAGGTTCCAGACCCGGAACTTCAA
TAACATGGATGCCATTACTGTTGATTCCGGCAGCTAGACAGGAGGATGGG
TTAATTGTCTCATGACTGCCTCTTTCTTCTGTGATTTCCTTGTAGCTCTG
TTTTAGCTCTTCCAGCCTGATCTTTAAACTGGAAACCATGCTTTCAGCTT
TCTTATAGACTAGATCCAATTTATTGCTTTGAGCAGTA

BO06275.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:16
Subject Length Description Subject Range Query Range Score Percent Strand
CG30281-PA 876 CG30281-RA 54..873 838..19 4100 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30281-RA 1007 CG30281-RA 68..887 838..19 4100 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22115325..22115832 707..200 2540 100 Minus
2R 25286936 2R 22115887..22116069 201..19 915 100 Minus
2R 25286936 2R 22115171..22115248 785..708 375 98.7 Minus
2R 25286936 2R 22115064..22115123 838..779 300 100 Minus
Blast to na_te.dros performed on 2015-02-13 15:56:26 has no hits.

BO06275.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:56 Download gff for BO06275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30281-PA 55..876 16..837 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:56 Download gff for BO06275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30281-PA 55..876 16..837 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:13 Download gff for BO06275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30281-RA 69..893 11..837 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:20:33 Download gff for BO06275.3prime
Subject Subject Range Query Range Percent Splice Strand
CG30281-RA 69..893 11..837 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:20:33 Download gff for BO06275.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22115065..22115123 779..837 100 -> Minus
2R 22115178..22115248 708..778 100 -> Minus
2R 22115325..22115832 200..707 100 -> Minus
2R 22115889..22116075 11..199 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:13 Download gff for BO06275.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18002570..18002628 779..837 100 -> Minus
arm_2R 18002683..18002753 708..778 100 -> Minus
arm_2R 18002830..18003337 200..707 100 -> Minus
arm_2R 18003394..18003580 11..199 97   Minus

BO06275.5prime Sequence

905 bp (828 high quality bases) assembled on 2005-12-03

> BO06275.5prime
GAAGTTATCAGTCGACATGAATCTCTATTTGTTGTGTGTTTTAATTTTAA
GCGGTGGCAGCCTCTTGTCTACTGCTCAAAGCAATAAATTGGATCTAGTC
TATAAGAAAGCTGAAAGCATGGTTTCCAGTTTAAAGATCAGGCTGGAAGA
GCTAAAACAGAGCTACAAGGAAATCACAGAAGAAAGAGGCAGTCATGAGA
CAATTAACCCATCCTCCTGTCTAGCTGCCGGAATCAACAGTAATGGCATC
CATGTTATTGAAGTTCCGGGTCTGGAACCTTTTCCGGTTTATTGTGACAC
TCGGCTGGCGGGATCTGGATGGACTGTAATTCAGCGACGACAGGATGGCA
GTGAAAACTTCTATCGCTGTTGGGAGGAGTATAGCCAAGGATTTGGGGAG
CTTAGCGGAGAATTCTTTATGGGTCTGGAAAAGCTACACTTCCTAACAAC
CGCGGAGCCTTACGAGCTGTTTGTCTATATGGAAGATTTCAATGGAGTGG
TACATGATGCTCGATACGAGGATTTTGCCATTGGGAATGCATCAGCGTCC
TATGCGCTATCTGTTTTGGGTAAATACTCGGGAGACGCCGGTGATTCGTT
AAGGTACCACAAGGGAATGCCCTTCTCCACATTCGATCACGATGATACGG
GTCACGGATGCGCCAGGATTTATGTGGGGGCCTGGTGGTATGATCAGTGC
CAGAGGAGCAACCTCAATGGCCAATATTTGGAAGGAGGTCGATTCGAGCC
GAAGATGTCGGGTCGTGGAATCACCTGGATGAGCTGGCGTGGCTACGACT
ACGGCTACAAATTCGTACAAATGATGATCAGACCCCAGTGTTCCAACAAC
CTACGAAGGCAGGGCATGCAAAATGCCTTAAACGCCCATGCAAGCTTTCT
AGACC

BO06275.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:17
Subject Length Description Subject Range Query Range Score Percent Strand
CG30281-PA 876 CG30281-RA 1..873 17..889 4340 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:00:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG30281-RA 1007 CG30281-RA 14..887 16..889 4355 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:00:24
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22115325..22115832 201..708 2540 100 Plus
2R 25286936 2R 22115887..22116069 707..889 900 99.5 Plus
2R 25286936 2R 22115010..22115123 16..129 570 100 Plus
2R 25286936 2R 22115171..22115248 123..200 375 98.7 Plus
Blast to na_te.dros performed on 2015-02-11 03:00:27 has no hits.

BO06275.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:57 Download gff for BO06275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30281-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:58 Download gff for BO06275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30281-PA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:22 Download gff for BO06275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30281-RA 8..893 9..897 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:57 Download gff for BO06275.5prime
Subject Subject Range Query Range Percent Splice Strand
CG30281-RA 8..893 9..897 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:57 Download gff for BO06275.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22115004..22115123 9..129 96 -> Plus
2R 22115178..22115248 130..200 100 -> Plus
2R 22115325..22115832 201..708 100 -> Plus
2R 22115889..22116075 709..897 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:22 Download gff for BO06275.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18002509..18002628 9..129 96 -> Plus
arm_2R 18002683..18002753 130..200 100 -> Plus
arm_2R 18002830..18003337 201..708 100 -> Plus
arm_2R 18003394..18003580 709..897 97   Plus

BO06275.complete Sequence

907 bp (907 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630327

> BO06275.complete
GAAGTTATCAGTCGACATGAATCTCTATTTGTTGTGTGTTTTAATTTTAA
GCGGTGGCAGCCTCTTGTCTACTGCTCAAAGCAATAAATTGGATCTAGTC
TATAAGAAAGCTGAAAGCATGGTTTCCAGTTTAAAGATCAGGCTGGAAGA
GCTAAAACAGAGCTACAAGGAAATCACAGAAGAAAGAGGCAGTCATGAGA
CAATTAACCCATCCTCCTGTCTAGCTGCCGGAATCAACAGTAATGGCATC
CATGTTATTGAAGTTCCGGGTCTGGAACCTTTTCCGGTTTATTGTGACAC
TCGGCTGGCGGGATCTGGATGGACTGTAATTCAGCGACGACAGGATGGCA
GTGAAAACTTCTATCGCTGTTGGGAGGAGTATAGCCAAGGATTTGGGGAG
CTTAGCGGAGAATTCTTTATGGGTCTGGAAAAGCTACACTTCCTAACAAC
CGCGGAGCCTTACGAGCTGTTTGTCTATATGGAAGATTTCAATGGAGTGG
TACATGATGCTCGATACGAGGATTTTGCCATTGGGAATGCATCAGCGTCC
TATGCGCTATCTGTTTTGGGTAAATACTCGGGAGACGCCGGTGATTCGTT
AAGGTACCACAAGGGAATGCCCTTCTCCACATTCGATCACGATGATACGG
GTCACGGATGCGCCAGGATTTATGTGGGGGCCTGGTGGTATGATCAGTGC
CAGAGGAGCAACCTCAATGGCCAATATTTGGAAGGAGGTCGATTCGAGCC
GAAGATGTCGGGTCGTGGAATCACCTGGATGAGCTGGCGTGGCTACGACT
ACGGCTACAAATTCGTACAAATGATGATCAGACCCAAGTGTTCCAACAAC
CTACGAAGGCAGGGCATGCAAAATGCCTTAAACGCCCATGCAAGCTTTCT
AGACCAT

BO06275.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG30281-RA 876 CG30281-PA 1..873 17..889 4365 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG30281-RA 1007 CG30281-RA 14..887 16..889 4370 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:56
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22115325..22115832 201..708 2540 100 Plus
2R 25286936 2R 22115887..22116069 707..889 915 100 Plus
2R 25286936 2R 22115010..22115123 16..129 570 100 Plus
2R 25286936 2R 22115171..22115248 123..200 375 98.7 Plus
Blast to na_te.dros performed on 2014-11-27 11:05:58 has no hits.

BO06275.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:05 Download gff for BO06275.complete
Subject Subject Range Query Range Percent Splice Strand
CG30281-RA 1..876 17..892 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:36 Download gff for BO06275.complete
Subject Subject Range Query Range Percent Splice Strand
CG30281-RA 8..893 9..897 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:18:14 Download gff for BO06275.complete
Subject Subject Range Query Range Percent Splice Strand
CG30281-RA 15..887 17..891 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:05 Download gff for BO06275.complete
Subject Subject Range Query Range Percent Splice Strand
CG30281-RA 8..893 9..897 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:44 Download gff for BO06275.complete
Subject Subject Range Query Range Percent Splice Strand
CG30281-RA 15..887 17..891 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:44 Download gff for BO06275.complete
Subject Subject Range Query Range Percent Splice Strand
2R 22115011..22115123 17..129 100 -> Plus
2R 22115178..22115248 130..200 100 -> Plus
2R 22115325..22115832 201..708 100 -> Plus
2R 22115889..22116069 709..891 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:18:14 Download gff for BO06275.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18002516..18002628 17..129 100 -> Plus
arm_2R 18002683..18002753 130..200 100 -> Plus
arm_2R 18002830..18003337 201..708 100 -> Plus
arm_2R 18003394..18003574 709..891 98   Plus

BO06275.pep Sequence

Translation from 16 to 907

> BO06275.pep
MNLYLLCVLILSGGSLLSTAQSNKLDLVYKKAESMVSSLKIRLEELKQSY
KEITEERGSHETINPSSCLAAGINSNGIHVIEVPGLEPFPVYCDTRLAGS
GWTVIQRRQDGSENFYRCWEEYSQGFGELSGEFFMGLEKLHFLTTAEPYE
LFVYMEDFNGVVHDARYEDFAIGNASASYALSVLGKYSGDAGDSLRYHKG
MPFSTFDHDDTGHGCARIYVGAWWYDQCQRSNLNGQYLEGGRFEPKMSGR
GITWMSWRGYDYGYKFVQMMIRPKCSNNLRRQGMQNALNAHASFLDH

BO06275.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG30281-PA 291 CG30281-PA 1..291 1..291 1571 100 Plus
CG30280-PB 272 CG30280-PB 15..264 25..275 704 49.6 Plus
CG9500-PA 272 CG9500-PA 67..268 75..275 540 46.8 Plus
CG5550-PA 246 CG5550-PA 37..246 66..274 535 46.9 Plus
CG30280-PC 220 CG30280-PC 15..217 25..228 532 47.3 Plus