Clone Sequence Records
BO06275.3prime Sequence
838 bp (836 high quality bases) assembled on 2005-12-03
> BO06275.3prime
ATGGTCTAGAAAGCTTGCATGGGCGTTTAAGGCATTTTGCATGCCCTGCC
TTCGTAGGTTGTTGGAACACTTGGGTCTGATCATCATTTGTACGAATTTG
TAGCCGTAGTCGTAGCCACGCCAGCTCATCCAGGTGATTCCACGACCCGA
CATCTTCGGCTCGAATCGACCTCCTTCCAAATATTGGCCATTGAGGTTGC
TCCTCTGGCACTGATCATACCACCAGGCCCCCACATAAATCCTGGCGCAT
CCGTGACCCGTATCATCGTGATCGAATGTGGAGAAGGGCATTCCCTTGTG
GTACCTTAACGAATCACCGGCGTCTCCCGAGTATTTACCCAAAACAGATA
GCGCATAGGACGCTGATGCATTCCCAATGGCAAAATCCTCGTATCGAGCA
TCATGTACCACTCCATTGAAATCTTCCATATAGACAAACAGCTCGTAAGG
CTCCGCGGTTGTTAGGAAGTGTAGCTTTTCCAGACCCATAAAGAATTCTC
CGCTAAGCTCCCCAAATCCTTGGCTATACTCCTCCCAACAGCGATAGAAG
TTTTCACTGCCATCCTGTCGTCGCTGAATTACAGTCCATCCAGATCCCGC
CAGCCGAGTGTCACAATAAACCGGAAAAGGTTCCAGACCCGGAACTTCAA
TAACATGGATGCCATTACTGTTGATTCCGGCAGCTAGACAGGAGGATGGG
TTAATTGTCTCATGACTGCCTCTTTCTTCTGTGATTTCCTTGTAGCTCTG
TTTTAGCTCTTCCAGCCTGATCTTTAAACTGGAAACCATGCTTTCAGCTT
TCTTATAGACTAGATCCAATTTATTGCTTTGAGCAGTA
BO06275.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30281-PA | 876 | CG30281-RA | 54..873 | 838..19 | 4100 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 15:56:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30281-RA | 1007 | CG30281-RA | 68..887 | 838..19 | 4100 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 15:56:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22115325..22115832 | 707..200 | 2540 | 100 | Minus |
2R | 25286936 | 2R | 22115887..22116069 | 201..19 | 915 | 100 | Minus |
2R | 25286936 | 2R | 22115171..22115248 | 785..708 | 375 | 98.7 | Minus |
2R | 25286936 | 2R | 22115064..22115123 | 838..779 | 300 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 15:56:26 has no hits.
BO06275.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:56 Download gff for
BO06275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-PA | 55..876 | 16..837 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:56 Download gff for
BO06275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-PA | 55..876 | 16..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-03 11:07:13 Download gff for
BO06275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-RA | 69..893 | 11..837 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 18:20:33 Download gff for
BO06275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-RA | 69..893 | 11..837 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 18:20:33 Download gff for
BO06275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22115065..22115123 | 779..837 | 100 | -> | Minus |
2R | 22115178..22115248 | 708..778 | 100 | -> | Minus |
2R | 22115325..22115832 | 200..707 | 100 | -> | Minus |
2R | 22115889..22116075 | 11..199 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-03 11:07:13 Download gff for
BO06275.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18002570..18002628 | 779..837 | 100 | -> | Minus |
arm_2R | 18002683..18002753 | 708..778 | 100 | -> | Minus |
arm_2R | 18002830..18003337 | 200..707 | 100 | -> | Minus |
arm_2R | 18003394..18003580 | 11..199 | 97 | | Minus |
BO06275.5prime Sequence
905 bp (828 high quality bases) assembled on 2005-12-03
> BO06275.5prime
GAAGTTATCAGTCGACATGAATCTCTATTTGTTGTGTGTTTTAATTTTAA
GCGGTGGCAGCCTCTTGTCTACTGCTCAAAGCAATAAATTGGATCTAGTC
TATAAGAAAGCTGAAAGCATGGTTTCCAGTTTAAAGATCAGGCTGGAAGA
GCTAAAACAGAGCTACAAGGAAATCACAGAAGAAAGAGGCAGTCATGAGA
CAATTAACCCATCCTCCTGTCTAGCTGCCGGAATCAACAGTAATGGCATC
CATGTTATTGAAGTTCCGGGTCTGGAACCTTTTCCGGTTTATTGTGACAC
TCGGCTGGCGGGATCTGGATGGACTGTAATTCAGCGACGACAGGATGGCA
GTGAAAACTTCTATCGCTGTTGGGAGGAGTATAGCCAAGGATTTGGGGAG
CTTAGCGGAGAATTCTTTATGGGTCTGGAAAAGCTACACTTCCTAACAAC
CGCGGAGCCTTACGAGCTGTTTGTCTATATGGAAGATTTCAATGGAGTGG
TACATGATGCTCGATACGAGGATTTTGCCATTGGGAATGCATCAGCGTCC
TATGCGCTATCTGTTTTGGGTAAATACTCGGGAGACGCCGGTGATTCGTT
AAGGTACCACAAGGGAATGCCCTTCTCCACATTCGATCACGATGATACGG
GTCACGGATGCGCCAGGATTTATGTGGGGGCCTGGTGGTATGATCAGTGC
CAGAGGAGCAACCTCAATGGCCAATATTTGGAAGGAGGTCGATTCGAGCC
GAAGATGTCGGGTCGTGGAATCACCTGGATGAGCTGGCGTGGCTACGACT
ACGGCTACAAATTCGTACAAATGATGATCAGACCCCAGTGTTCCAACAAC
CTACGAAGGCAGGGCATGCAAAATGCCTTAAACGCCCATGCAAGCTTTCT
AGACC
BO06275.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30281-PA | 876 | CG30281-RA | 1..873 | 17..889 | 4340 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:00:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30281-RA | 1007 | CG30281-RA | 14..887 | 16..889 | 4355 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:00:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22115325..22115832 | 201..708 | 2540 | 100 | Plus |
2R | 25286936 | 2R | 22115887..22116069 | 707..889 | 900 | 99.5 | Plus |
2R | 25286936 | 2R | 22115010..22115123 | 16..129 | 570 | 100 | Plus |
2R | 25286936 | 2R | 22115171..22115248 | 123..200 | 375 | 98.7 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:00:27 has no hits.
BO06275.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:44:57 Download gff for
BO06275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:15:58 Download gff for
BO06275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-PA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:22 Download gff for
BO06275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-RA | 8..893 | 9..897 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:41:57 Download gff for
BO06275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-RA | 8..893 | 9..897 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:41:57 Download gff for
BO06275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22115004..22115123 | 9..129 | 96 | -> | Plus |
2R | 22115178..22115248 | 130..200 | 100 | -> | Plus |
2R | 22115325..22115832 | 201..708 | 100 | -> | Plus |
2R | 22115889..22116075 | 709..897 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:22 Download gff for
BO06275.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18002509..18002628 | 9..129 | 96 | -> | Plus |
arm_2R | 18002683..18002753 | 130..200 | 100 | -> | Plus |
arm_2R | 18002830..18003337 | 201..708 | 100 | -> | Plus |
arm_2R | 18003394..18003580 | 709..897 | 97 | | Plus |
BO06275.complete Sequence
907 bp (907 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630327
> BO06275.complete
GAAGTTATCAGTCGACATGAATCTCTATTTGTTGTGTGTTTTAATTTTAA
GCGGTGGCAGCCTCTTGTCTACTGCTCAAAGCAATAAATTGGATCTAGTC
TATAAGAAAGCTGAAAGCATGGTTTCCAGTTTAAAGATCAGGCTGGAAGA
GCTAAAACAGAGCTACAAGGAAATCACAGAAGAAAGAGGCAGTCATGAGA
CAATTAACCCATCCTCCTGTCTAGCTGCCGGAATCAACAGTAATGGCATC
CATGTTATTGAAGTTCCGGGTCTGGAACCTTTTCCGGTTTATTGTGACAC
TCGGCTGGCGGGATCTGGATGGACTGTAATTCAGCGACGACAGGATGGCA
GTGAAAACTTCTATCGCTGTTGGGAGGAGTATAGCCAAGGATTTGGGGAG
CTTAGCGGAGAATTCTTTATGGGTCTGGAAAAGCTACACTTCCTAACAAC
CGCGGAGCCTTACGAGCTGTTTGTCTATATGGAAGATTTCAATGGAGTGG
TACATGATGCTCGATACGAGGATTTTGCCATTGGGAATGCATCAGCGTCC
TATGCGCTATCTGTTTTGGGTAAATACTCGGGAGACGCCGGTGATTCGTT
AAGGTACCACAAGGGAATGCCCTTCTCCACATTCGATCACGATGATACGG
GTCACGGATGCGCCAGGATTTATGTGGGGGCCTGGTGGTATGATCAGTGC
CAGAGGAGCAACCTCAATGGCCAATATTTGGAAGGAGGTCGATTCGAGCC
GAAGATGTCGGGTCGTGGAATCACCTGGATGAGCTGGCGTGGCTACGACT
ACGGCTACAAATTCGTACAAATGATGATCAGACCCAAGTGTTCCAACAAC
CTACGAAGGCAGGGCATGCAAAATGCCTTAAACGCCCATGCAAGCTTTCT
AGACCAT
BO06275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 11:05:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30281-RA | 876 | CG30281-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:05:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30281-RA | 1007 | CG30281-RA | 14..887 | 16..889 | 4370 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 11:05:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22115325..22115832 | 201..708 | 2540 | 100 | Plus |
2R | 25286936 | 2R | 22115887..22116069 | 707..889 | 915 | 100 | Plus |
2R | 25286936 | 2R | 22115010..22115123 | 16..129 | 570 | 100 | Plus |
2R | 25286936 | 2R | 22115171..22115248 | 123..200 | 375 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 11:05:58 has no hits.
BO06275.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:05 Download gff for
BO06275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-RA | 1..876 | 17..892 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:36 Download gff for
BO06275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-RA | 8..893 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:18:14 Download gff for
BO06275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-RA | 15..887 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:05 Download gff for
BO06275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-RA | 8..893 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:38:44 Download gff for
BO06275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG30281-RA | 15..887 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:38:44 Download gff for
BO06275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22115011..22115123 | 17..129 | 100 | -> | Plus |
2R | 22115178..22115248 | 130..200 | 100 | -> | Plus |
2R | 22115325..22115832 | 201..708 | 100 | -> | Plus |
2R | 22115889..22116069 | 709..891 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:18:14 Download gff for
BO06275.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18002516..18002628 | 17..129 | 100 | -> | Plus |
arm_2R | 18002683..18002753 | 130..200 | 100 | -> | Plus |
arm_2R | 18002830..18003337 | 201..708 | 100 | -> | Plus |
arm_2R | 18003394..18003574 | 709..891 | 98 | | Plus |
BO06275.pep Sequence
Translation from 16 to 907
> BO06275.pep
MNLYLLCVLILSGGSLLSTAQSNKLDLVYKKAESMVSSLKIRLEELKQSY
KEITEERGSHETINPSSCLAAGINSNGIHVIEVPGLEPFPVYCDTRLAGS
GWTVIQRRQDGSENFYRCWEEYSQGFGELSGEFFMGLEKLHFLTTAEPYE
LFVYMEDFNGVVHDARYEDFAIGNASASYALSVLGKYSGDAGDSLRYHKG
MPFSTFDHDDTGHGCARIYVGAWWYDQCQRSNLNGQYLEGGRFEPKMSGR
GITWMSWRGYDYGYKFVQMMIRPKCSNNLRRQGMQNALNAHASFLDH
BO06275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG30281-PA | 291 | CG30281-PA | 1..291 | 1..291 | 1571 | 100 | Plus |
CG30280-PB | 272 | CG30280-PB | 15..264 | 25..275 | 704 | 49.6 | Plus |
CG9500-PA | 272 | CG9500-PA | 67..268 | 75..275 | 540 | 46.8 | Plus |
CG5550-PA | 246 | CG5550-PA | 37..246 | 66..274 | 535 | 46.9 | Plus |
CG30280-PC | 220 | CG30280-PC | 15..217 | 25..228 | 532 | 47.3 | Plus |