Clone Sequence Records
BO06277.3prime Sequence
719 bp (679 high quality bases) assembled on 2005-12-03
> BO06277.3prime
ATGGTCTAGAAAGCTTGCCATATTGTCACATCTAACTATCATAGGCGGAG
CGAACTGGTGGTGGCGCACACCAAAGGAGTAGCCCGGTCCACTCTTGCCA
GGACGATAGTACATGAGGTCGTAGTAGTTGGGTCCAGGTCCGACATTCTC
GCCCGGAATAGTGGTGCGCGGCTGCATCGAGTATATCGGAGCACGTGTCA
GTTTGACATTGATATCACCACCGCCATATGCAGCCGGACCCGGAGAATTC
GTCTTGTTCAAAATCTTTGTTTGTAGTCCCATGCTATAGCTCGGGACTCC
AGGACGAACGGCATTGACCTCGTACTTGTAGGCATTGGGACCGGGACCAT
CCTTCTTGAAGTTAAAGTCCGTTCGTAGGCCCATCGAATACGAAGGAGCA
TTAACCCCCTTAAAGAATGGCCTATTATGAACATCGTGTGCTCCCGGACC
GGGACTGCTTCGCTTATCGATGACATTGGTTCTGGGCGCCATCGAGAACT
CCAAACCCTTGCTCGTGCCATAGCGAGTCAACTTGTCCACCTTGTAGGCC
CCTGGACCAGGACCCAGATCCTCACCAGGAGCACGGGTGCGCATGCCGAA
AGAGTACTGCGGCAACCGCTGTTTGCGGTTGTCATGCTTATCATAGCCCA
CAGTGGGGGGCAGCATGTAAACGCCGGGTCCAGGGCCAAAAGGTCGCACC
GCCATGTCGACTGATAACT
BO06277.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-PA | 690 | CG10252-RA | 1..687 | 705..19 | 3435 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-RA | 833 | CG10252-RA | 84..770 | 705..19 | 3435 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23695284..23695545 | 19..280 | 1310 | 100 | Plus |
3R | 32079331 | 3R | 23695859..23696083 | 463..687 | 1110 | 99.6 | Plus |
3R | 32079331 | 3R | 23695616..23695804 | 280..468 | 945 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 16:21:43 has no hits.
BO06277.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:00 Download gff for
BO06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-PA | 1..690 | 18..705 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:02 Download gff for
BO06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-PA | 1..690 | 18..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:05 Download gff for
BO06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..770 | 19..705 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:03 Download gff for
BO06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..770 | 19..705 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:03 Download gff for
BO06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23695617..23695803 | 281..467 | 100 | <- | Plus |
3R | 23695864..23696082 | 468..686 | 100 | <- | Plus |
3R | 23696144..23696162 | 687..705 | 100 | | Plus |
3R | 23695284..23695545 | 19..280 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:05 Download gff for
BO06277.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19521006..19521267 | 19..280 | 100 | <- | Plus |
arm_3R | 19521339..19521525 | 281..467 | 100 | <- | Plus |
arm_3R | 19521586..19521804 | 468..686 | 100 | <- | Plus |
arm_3R | 19521866..19521884 | 687..705 | 100 | | Plus |
BO06277.5prime Sequence
719 bp (718 high quality bases) assembled on 2005-12-03
> BO06277.5prime
GAAGTTATCAGTCGACATGGCGGTGCGACCTTTTGGCCCTGGACCCGGCG
TTTACATGCTGCCCCCCACTGTGGGCTATGATAAGCATGACAACCGCAAA
CAGCGGTTGCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTCCTGGTGA
GGATCTGGGTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTGACTCGCT
ATGGCACGAGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAACCAATGTC
ATCGATAAGCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTCATAATAG
GCCATTCTTTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGCCTACGAA
CGGACTTTAACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTACAAGTAC
GAGGTCAATGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGGGACTACA
AACAAAGATTTTGAACAAGACGAATTCTCCGGGTCCGGCTGCATATGGCG
GTGGTGATATCAATGTCAAACTGACACGTGCTCCGATATACTCGATGCAG
CCGCGCACCACTATTCCGGGCGAGAATGTCGGACCTGGACCCAACTACTA
CGACCTCATGTACTATCGTCCTGGCAAGAGTGGACCGGGCTACTCCTTTG
GTGTGCGCCACCACCAGTTCGCTCCGCCTATGATAGTTAGATGTGACAAT
ATGGCAAGCTTTCTAGACC
BO06277.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-PA | 690 | CG10252-RA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:54:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-RA | 833 | CG10252-RA | 84..770 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:53:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23695284..23695545 | 703..442 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 23695859..23696083 | 259..35 | 1110 | 99.6 | Minus |
3R | 32079331 | 3R | 23695616..23695804 | 442..254 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:54:01 has no hits.
BO06277.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:01 Download gff for
BO06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-PA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:03 Download gff for
BO06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-PA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:22 Download gff for
BO06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..770 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:44:43 Download gff for
BO06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..770 | 17..703 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:44:43 Download gff for
BO06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23695284..23695545 | 442..703 | 100 | <- | Minus |
3R | 23695617..23695803 | 255..441 | 100 | <- | Minus |
3R | 23695864..23696082 | 36..254 | 100 | <- | Minus |
3R | 23696144..23696162 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:22 Download gff for
BO06277.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19521006..19521267 | 442..703 | 100 | <- | Minus |
arm_3R | 19521339..19521525 | 255..441 | 100 | <- | Minus |
arm_3R | 19521586..19521804 | 36..254 | 100 | <- | Minus |
arm_3R | 19521866..19521884 | 17..35 | 100 | | Minus |
BO06277.complete Sequence
721 bp (721 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630328
> BO06277.complete
GAAGTTATCAGTCGACATGGCGGTGCGACCTTTTGGCCCTGGACCCGGCG
TTTACATGCTGCCCCCCACTGTGGGCTATGATAAGCATGACAACCGCAAA
CAGCGGTTGCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTCCTGGTGA
GGATCTGGGTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTGACTCGCT
ATGGCACGAGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAACCAATGTC
ATCGATAAGCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTCATAATAG
GCCATTCTTTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGCCTACGAA
CGGACTTTAACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTACAAGTAC
GAGGTCAATGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGGGACTACA
AACAAAGATTTTGAACAAGACGAATTCTCCGGGTCCGGCTGCATATGGCG
GTGGTGATATCAATGTCAAACTGACACGTGCTCCGATATACTCGATGCAG
CCGCGCACCACTATTCCGGGCGAGAATGTCGGACCTGGACCCAACTACTA
CGACCTCATGTACTATCGTCCTGGCAAGAGTGGACCGGGCTACTCCTTTG
GTGTGCGCCACCACCAGTTCGCTCCGCCTATGATAGTTAGATGTGACAAT
ATGGCAAGCTTTCTAGACCAT
BO06277.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-RA | 690 | CG10252-PA | 1..687 | 17..703 | 3435 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-RA | 833 | CG10252-RA | 84..770 | 17..703 | 3435 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 23695284..23695545 | 703..442 | 1310 | 100 | Minus |
3R | 32079331 | 3R | 23695859..23696083 | 259..35 | 1110 | 99.6 | Minus |
3R | 32079331 | 3R | 23695616..23695804 | 442..254 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 16:50:29 has no hits.
BO06277.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:06 Download gff for
BO06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 1..690 | 17..704 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:38 Download gff for
BO06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 117..803 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:04 Download gff for
BO06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..770 | 17..705 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:06 Download gff for
BO06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 117..803 | 17..703 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:38 Download gff for
BO06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10252-RA | 84..770 | 17..705 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:38 Download gff for
BO06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 23695282..23695545 | 442..705 | 99 | <- | Minus |
3R | 23695617..23695803 | 255..441 | 100 | <- | Minus |
3R | 23695864..23696082 | 36..254 | 100 | <- | Minus |
3R | 23696144..23696162 | 17..35 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:04 Download gff for
BO06277.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 19521586..19521804 | 36..254 | 100 | <- | Minus |
arm_3R | 19521866..19521884 | 17..35 | 100 | | Minus |
arm_3R | 19521004..19521267 | 442..705 | 99 | <- | Minus |
arm_3R | 19521339..19521525 | 255..441 | 100 | <- | Minus |
BO06277.pep Sequence
Translation from 16 to 721
> BO06277.pep
MAVRPFGPGPGVYMLPPTVGYDKHDNRKQRLPQYSFGMRTRAPGEDLGPG
PGAYKVDKLTRYGTSKGLEFSMAPRTNVIDKRSSPGPGAHDVHNRPFFKG
VNAPSYSMGLRTDFNFKKDGPGPNAYKYEVNAVRPGVPSYSMGLQTKILN
KTNSPGPAAYGGGDINVKLTRAPIYSMQPRTTIPGENVGPGPNYYDLMYY
RPGKSGPGYSFGVRHHQFAPPMIVRCDNMASFLDH
BO06277.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10252-PA | 229 | CG10252-PA | 1..229 | 1..229 | 1262 | 100 | Plus |
CG8086-PI | 1603 | CG8086-PI | 45..263 | 1..220 | 239 | 29.6 | Plus |
CG8086-PA | 272 | CG8086-PA | 19..243 | 1..218 | 217 | 28.5 | Plus |
CG8086-PB | 298 | CG8086-PB | 45..269 | 1..218 | 217 | 28.5 | Plus |
CG8086-PK | 261 | CG8086-PK | 19..242 | 1..218 | 214 | 28.9 | Plus |
CG8086-PI | 1603 | CG8086-PI | 234..425 | 8..217 | 175 | 25.7 | Plus |
CG8086-PI | 1603 | CG8086-PI | 165..356 | 8..214 | 173 | 28 | Plus |
CG8086-PI | 1603 | CG8086-PI | 465..659 | 16..220 | 152 | 27.3 | Plus |
CG8086-PI | 1603 | CG8086-PI | 399..588 | 16..215 | 150 | 27.5 | Plus |