Clone BO06277 Report

Search the DGRC for BO06277

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:77
Vector:pDNR-Dual
Associated Gene/TranscriptCG10252-RA
Protein status:BO06277.pep: validated full length
Sequenced Size:721

Clone Sequence Records

BO06277.3prime Sequence

719 bp (679 high quality bases) assembled on 2005-12-03

> BO06277.3prime
ATGGTCTAGAAAGCTTGCCATATTGTCACATCTAACTATCATAGGCGGAG
CGAACTGGTGGTGGCGCACACCAAAGGAGTAGCCCGGTCCACTCTTGCCA
GGACGATAGTACATGAGGTCGTAGTAGTTGGGTCCAGGTCCGACATTCTC
GCCCGGAATAGTGGTGCGCGGCTGCATCGAGTATATCGGAGCACGTGTCA
GTTTGACATTGATATCACCACCGCCATATGCAGCCGGACCCGGAGAATTC
GTCTTGTTCAAAATCTTTGTTTGTAGTCCCATGCTATAGCTCGGGACTCC
AGGACGAACGGCATTGACCTCGTACTTGTAGGCATTGGGACCGGGACCAT
CCTTCTTGAAGTTAAAGTCCGTTCGTAGGCCCATCGAATACGAAGGAGCA
TTAACCCCCTTAAAGAATGGCCTATTATGAACATCGTGTGCTCCCGGACC
GGGACTGCTTCGCTTATCGATGACATTGGTTCTGGGCGCCATCGAGAACT
CCAAACCCTTGCTCGTGCCATAGCGAGTCAACTTGTCCACCTTGTAGGCC
CCTGGACCAGGACCCAGATCCTCACCAGGAGCACGGGTGCGCATGCCGAA
AGAGTACTGCGGCAACCGCTGTTTGCGGTTGTCATGCTTATCATAGCCCA
CAGTGGGGGGCAGCATGTAAACGCCGGGTCCAGGGCCAAAAGGTCGCACC
GCCATGTCGACTGATAACT

BO06277.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:19
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-PA 690 CG10252-RA 1..687 705..19 3435 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 16:21:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-RA 833 CG10252-RA 84..770 705..19 3435 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 16:21:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23695284..23695545 19..280 1310 100 Plus
3R 32079331 3R 23695859..23696083 463..687 1110 99.6 Plus
3R 32079331 3R 23695616..23695804 280..468 945 100 Plus
Blast to na_te.dros performed on 2015-02-11 16:21:43 has no hits.

BO06277.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:00 Download gff for BO06277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-PA 1..690 18..705 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:02 Download gff for BO06277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-PA 1..690 18..705 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-25 19:39:05 Download gff for BO06277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..770 19..705 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 18:40:03 Download gff for BO06277.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..770 19..705 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 18:40:03 Download gff for BO06277.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 23695617..23695803 281..467 100 <- Plus
3R 23695864..23696082 468..686 100 <- Plus
3R 23696144..23696162 687..705 100   Plus
3R 23695284..23695545 19..280 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-25 19:39:05 Download gff for BO06277.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19521006..19521267 19..280 100 <- Plus
arm_3R 19521339..19521525 281..467 100 <- Plus
arm_3R 19521586..19521804 468..686 100 <- Plus
arm_3R 19521866..19521884 687..705 100   Plus

BO06277.5prime Sequence

719 bp (718 high quality bases) assembled on 2005-12-03

> BO06277.5prime
GAAGTTATCAGTCGACATGGCGGTGCGACCTTTTGGCCCTGGACCCGGCG
TTTACATGCTGCCCCCCACTGTGGGCTATGATAAGCATGACAACCGCAAA
CAGCGGTTGCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTCCTGGTGA
GGATCTGGGTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTGACTCGCT
ATGGCACGAGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAACCAATGTC
ATCGATAAGCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTCATAATAG
GCCATTCTTTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGCCTACGAA
CGGACTTTAACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTACAAGTAC
GAGGTCAATGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGGGACTACA
AACAAAGATTTTGAACAAGACGAATTCTCCGGGTCCGGCTGCATATGGCG
GTGGTGATATCAATGTCAAACTGACACGTGCTCCGATATACTCGATGCAG
CCGCGCACCACTATTCCGGGCGAGAATGTCGGACCTGGACCCAACTACTA
CGACCTCATGTACTATCGTCCTGGCAAGAGTGGACCGGGCTACTCCTTTG
GTGTGCGCCACCACCAGTTCGCTCCGCCTATGATAGTTAGATGTGACAAT
ATGGCAAGCTTTCTAGACC

BO06277.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-PA 690 CG10252-RA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:54:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-RA 833 CG10252-RA 84..770 17..703 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23695284..23695545 703..442 1310 100 Minus
3R 32079331 3R 23695859..23696083 259..35 1110 99.6 Minus
3R 32079331 3R 23695616..23695804 442..254 945 100 Minus
Blast to na_te.dros performed on 2015-02-04 19:54:01 has no hits.

BO06277.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:01 Download gff for BO06277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-PA 1..690 17..704 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:03 Download gff for BO06277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-PA 1..690 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:22 Download gff for BO06277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..770 17..703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:44:43 Download gff for BO06277.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..770 17..703 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:44:43 Download gff for BO06277.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 23695284..23695545 442..703 100 <- Minus
3R 23695617..23695803 255..441 100 <- Minus
3R 23695864..23696082 36..254 100 <- Minus
3R 23696144..23696162 17..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:22 Download gff for BO06277.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19521006..19521267 442..703 100 <- Minus
arm_3R 19521339..19521525 255..441 100 <- Minus
arm_3R 19521586..19521804 36..254 100 <- Minus
arm_3R 19521866..19521884 17..35 100   Minus

BO06277.complete Sequence

721 bp (721 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630328

> BO06277.complete
GAAGTTATCAGTCGACATGGCGGTGCGACCTTTTGGCCCTGGACCCGGCG
TTTACATGCTGCCCCCCACTGTGGGCTATGATAAGCATGACAACCGCAAA
CAGCGGTTGCCGCAGTACTCTTTCGGCATGCGCACCCGTGCTCCTGGTGA
GGATCTGGGTCCTGGTCCAGGGGCCTACAAGGTGGACAAGTTGACTCGCT
ATGGCACGAGCAAGGGTTTGGAGTTCTCGATGGCGCCCAGAACCAATGTC
ATCGATAAGCGAAGCAGTCCCGGTCCGGGAGCACACGATGTTCATAATAG
GCCATTCTTTAAGGGGGTTAATGCTCCTTCGTATTCGATGGGCCTACGAA
CGGACTTTAACTTCAAGAAGGATGGTCCCGGTCCCAATGCCTACAAGTAC
GAGGTCAATGCCGTTCGTCCTGGAGTCCCGAGCTATAGCATGGGACTACA
AACAAAGATTTTGAACAAGACGAATTCTCCGGGTCCGGCTGCATATGGCG
GTGGTGATATCAATGTCAAACTGACACGTGCTCCGATATACTCGATGCAG
CCGCGCACCACTATTCCGGGCGAGAATGTCGGACCTGGACCCAACTACTA
CGACCTCATGTACTATCGTCCTGGCAAGAGTGGACCGGGCTACTCCTTTG
GTGTGCGCCACCACCAGTTCGCTCCGCCTATGATAGTTAGATGTGACAAT
ATGGCAAGCTTTCTAGACCAT

BO06277.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 16:50:30
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-RA 690 CG10252-PA 1..687 17..703 3435 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:50:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-RA 833 CG10252-RA 84..770 17..703 3435 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 16:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23695284..23695545 703..442 1310 100 Minus
3R 32079331 3R 23695859..23696083 259..35 1110 99.6 Minus
3R 32079331 3R 23695616..23695804 442..254 945 100 Minus
Blast to na_te.dros performed on 2014-11-26 16:50:29 has no hits.

BO06277.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:25:06 Download gff for BO06277.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 1..690 17..704 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:38 Download gff for BO06277.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 117..803 17..703 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 02:11:04 Download gff for BO06277.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..770 17..705 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:25:06 Download gff for BO06277.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 117..803 17..703 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:28:38 Download gff for BO06277.complete
Subject Subject Range Query Range Percent Splice Strand
CG10252-RA 84..770 17..705 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:28:38 Download gff for BO06277.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23695282..23695545 442..705 99 <- Minus
3R 23695617..23695803 255..441 100 <- Minus
3R 23695864..23696082 36..254 100 <- Minus
3R 23696144..23696162 17..35 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 02:11:04 Download gff for BO06277.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19521586..19521804 36..254 100 <- Minus
arm_3R 19521866..19521884 17..35 100   Minus
arm_3R 19521004..19521267 442..705 99 <- Minus
arm_3R 19521339..19521525 255..441 100 <- Minus

BO06277.pep Sequence

Translation from 16 to 721

> BO06277.pep
MAVRPFGPGPGVYMLPPTVGYDKHDNRKQRLPQYSFGMRTRAPGEDLGPG
PGAYKVDKLTRYGTSKGLEFSMAPRTNVIDKRSSPGPGAHDVHNRPFFKG
VNAPSYSMGLRTDFNFKKDGPGPNAYKYEVNAVRPGVPSYSMGLQTKILN
KTNSPGPAAYGGGDINVKLTRAPIYSMQPRTTIPGENVGPGPNYYDLMYY
RPGKSGPGYSFGVRHHQFAPPMIVRCDNMASFLDH

BO06277.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:13
Subject Length Description Subject Range Query Range Score Percent Strand
CG10252-PA 229 CG10252-PA 1..229 1..229 1262 100 Plus
CG8086-PI 1603 CG8086-PI 45..263 1..220 239 29.6 Plus
CG8086-PA 272 CG8086-PA 19..243 1..218 217 28.5 Plus
CG8086-PB 298 CG8086-PB 45..269 1..218 217 28.5 Plus
CG8086-PK 261 CG8086-PK 19..242 1..218 214 28.9 Plus
CG8086-PI 1603 CG8086-PI 234..425 8..217 175 25.7 Plus
CG8086-PI 1603 CG8086-PI 165..356 8..214 173 28 Plus
CG8086-PI 1603 CG8086-PI 465..659 16..220 152 27.3 Plus
CG8086-PI 1603 CG8086-PI 399..588 16..215 150 27.5 Plus