Clone Sequence Records
BO06278.3prime Sequence
927 bp (838 high quality bases) assembled on 2005-12-03
> BO06278.3prime
ATGGTCTAGAAAGCTTGCTTTGTTAATATCCACGCGACTCACACACAACG
TGTGATCATAAAAGGAGCAAGTGGCCATGGTCAAGGACGCATCGTCCTTG
TTTCTCCATGGTGCCCAATCGGCCCCGTAGCAGATGCTCTTATGCTCCTC
ATAGGCGCCCAGTAAACTCAGGCCAGGTGCCGCGACATCCAGCTGCACCA
CGCTAAAGTTGGTGTACATGCAGGCGGCCAGGATGAGATCGGGCTGGGCA
GGATGCGGCTTCAGCCTCCAGATGCCTCCGCTCAAGTCCAGTTCCGCCAG
TGATCGCTTCATCGATCTGGTGTCGAAGAGACGCAACTGCTCATCATAGC
TACCCGTGAGCAGATGGTTTTCGTGCCGCGGATGACTTAGCAGACAGGTG
ACTCCAGCCATGTGCGCCCGGTTGGTCCACGCACGCTGCTTGGTGCGCAG
ATCGTGGGCCATGAGCAGCATATCGTCGCCACCACTGTACAGAATGTGCG
GTGACCAACGATCAAAGGCACAGGTCCAAGCCTCAAAGCCATGGGACAAC
CACGACCGTTCGCGGATTATCTCACCCTGTGATGAGTAGCTCAATAGATT
TAGGCCGCCTTTGGAATCGGAGATGGCCAGTCGGATGTGCTGCCCGTCAT
GTTGCCAGTCTAGGGCCAGCGCCAATGGCGCTTCCTCCGACGAATCCTGC
TCCGCCAGGCTAAAACACGTACGCCTCTGCAGTAGCTTCGCATCCTGGAG
AAACTCGTACAATTCCATCTGGCCTAAAGAGTTGACCGTGGCCAGGTGGG
GATTACACTCACTGCTCCAGGCCGGCAGCCACTTCATGTCGAGAATGGCA
GACGTTTCGATGCACTGTAGCCGCTCCCAGGCGCAGTTTTCCTCTTCAAA
CTGGTATAAATAAACGCGACCCTTGCG
BO06278.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-PA | 1071 | CG3184-RA | 210..1068 | 877..19 | 4295 | 100 | Minus |
| CG3184-PA | 1071 | CG3184-RA | 160..204 | 927..883 | 225 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 06:55:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-RA | 1179 | CG3184-RA | 194..1102 | 927..19 | 4500 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 06:54:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6687673..6688581 | 19..927 | 4485 | 99.6 | Plus |
Blast to na_te.dros performed on 2015-02-12 06:54:57 has no hits.
BO06278.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:02 Download gff for
BO06278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-PA | 160..1071 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:04 Download gff for
BO06278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-PA | 160..1071 | 16..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 05:31:50 Download gff for
BO06278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 194..1108 | 11..927 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 08:29:40 Download gff for
BO06278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 194..1108 | 11..927 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 08:29:40 Download gff for
BO06278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6687667..6688581 | 11..927 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 05:31:50 Download gff for
BO06278.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6581700..6582614 | 11..927 | 99 | | Plus |
BO06278.5prime Sequence
890 bp (730 high quality bases) assembled on 2005-12-03
> BO06278.5prime
GAAGTTATCAGTCGACATGTTTACAACGCTCCACAGCGAGGATACGGAAT
ATTCGGCAGATTCTGTGGAGTGGCTGACACACGATGATGCGGCAACGGGT
TTCTTTGCCTGCGGCACCTATCAGTTGGTCCAGGAGGAGGACGAGCCGGC
GGCGGAGACTTCAGCCAAGCGTCCACGCAAGGGTCGCGTTTATTTATACC
AGTTTGAAGAGGAAAACTGCCGCCTGGAGCGGCTACAGTGCATCGAAACG
TCTGCCATTCTCGACATGAAGTGGCTGCCGGCCTGGAGCAGTGAGTGTAA
TCCCCACCTGGCCACGGTCAACTCTTTAGGCCAGATGGAATTGTACGAGT
TTCTCCAGGATGCGAAGCTACTGCAGAGGCGTACGTGTTTTAGCCTGGCG
GAGCAGGATTCGTCGGAGGAAGCGCCATTGGCGCTGGCCCTAGACTGGCA
ACATGACGGGCAGCACATCCGACTGGCCATCTCCGATTCCAAAGGCGGCC
TAAATCTATTGAGCTACTCATCACAGGGTGAGATAATCCGCGAACGGTCG
TGGTTGTCCCATGGCTTTGAGGCTTGGACCTGTGCCTTTGATCGTTGGTC
ACCGCACATTCTGTACAGTGGTGGCGACGATATGCTGCTCATGGCCCACG
ATCTGCGCACCAAGCAGCGTGCGTGGACCAACCGGGCGCACATGGCTGGA
GTCACCTGTCTGCTAAGTCATCCGCGGCACGAAAACCATCTGCTCACGGG
TAGCTATGATGAGCAGTTGCGTCTCTTCGACACCAGATCGATGAAGCGAT
CACTGGCGGAACTGGACTTGAGCGGAGGCATCTGGAGGCTGAAGCCGCAT
CCTGCCCAGCCCGATCTCATCCTGGCCGCCTGCATGTACA
BO06278.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-PA | 1071 | CG3184-RA | 1..874 | 17..890 | 4370 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-RA | 1179 | CG3184-RA | 33..908 | 15..890 | 4380 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:02:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6687867..6688742 | 890..15 | 4380 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-11 05:03:00 has no hits.
BO06278.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:03 Download gff for
BO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:06 Download gff for
BO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-PA | 1..873 | 17..889 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:17 Download gff for
BO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 24..907 | 5..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:41:33 Download gff for
BO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 24..907 | 5..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:41:33 Download gff for
BO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6687868..6688750 | 5..889 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:17 Download gff for
BO06278.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6581901..6582783 | 5..889 | 99 | | Minus |
BO06278.complete Sequence
1102 bp (1102 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630329
> BO06278.complete
GAAGTTATCAGTCGACATGTTTACAACGCTCCACAGCGAGGATACGGAAT
ATTCGGCAGATTCTGTGGAGTGGCTGACACACGATGATGCGGCAACGGGT
TTCTTTGCCTGCGGCACCTATCAGTTGGTCCAGGAGGAGGACGAGCCGGC
GGCGGAGACTTCAGCCAAGCGTCCACGCAAGGGTCGCGTTTATTTATACC
AGTTTGAAGAGGAAAACTGCCGCCTGGAGCGGCTACAGTGCATCGAAACG
TCTGCCATTCTCGACATGAAGTGGCTGCCGGCCTGGAGCAGTGAGTGTAA
TCCCCACCTGGCCACGGTCAACTCTTTAGGCCAGATGGAATTGTACGAGT
TTCTCCAGGATGCGAAGCTACTGCAGAGGCGTACGTGTTTTAGCCTGGCG
GAGCAGGATTCGTCGGAGGAAGCGCCATTGGCGCTGGCCCTAGACTGGCA
ACATGACGGGCAGCACATCCGACTGGCCATCTCCGATTCCAAAGGCGGCC
TAAATCTATTGAGCTACTCATCACAGGGTGAGATAATCCGCGAACGGTCG
TGGTTGTCCCATGGCTTTGAGGCTTGGACCTGTGCCTTTGATCGTTGGTC
ACCGCACATTCTGTACAGTGGTGGCGACGATATGCTGCTCATGGCCCACG
ATCTGCGCACCAAGCAGCGTGCGTGGACCAACCGGGCGCACATGGCTGGA
GTCACCTGTCTGCTAAGTCATCCGCGGCACGAAAACCATCTGCTCACGGG
TAGCTATGATGAGCAGTTGCGTCTCTTCGACACCAGATCGATGAAGCGAT
CACTGGCGGAACTGGACTTGAGCGGAGGCATCTGGAGGCTGAAGCCGCAT
CCTGCCCAGCCCGATCTCATCCTGGCCGCCTGCATGTACACCAACTTTAG
CGTGGTGCAGCTGGATGTCGCGGCACCTGGCCTGAGTTTACTGGGCGCCT
ATGAGGAGCATAAGAGCATCTGCTACGGGGCCGATTGGGCACCATGGAGA
AACAAGGACGATGCGTCCTTGACCATGGCCACTTGCTCCTTTTATGATCA
CACGTTGTGTGTGAGTCGCGTGGATATTAACAAAGCAAGCTTTCTAGACC
AT
BO06278.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 15:39:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-RA | 1071 | CG3184-PA | 1..1068 | 17..1084 | 5340 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:39:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-RA | 1179 | CG3184-RA | 33..1102 | 15..1084 | 5350 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 15:39:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6687673..6688742 | 1084..15 | 5350 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 15:39:42 has no hits.
BO06278.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:52 Download gff for
BO06278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 1..1071 | 17..1087 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:16 Download gff for
BO06278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 20..1104 | 5..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:44:19 Download gff for
BO06278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 41..1102 | 23..1086 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:52 Download gff for
BO06278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 20..1104 | 5..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:13:13 Download gff for
BO06278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3184-RA | 41..1102 | 23..1086 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 16:13:13 Download gff for
BO06278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6687670..6688734 | 23..1086 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:44:19 Download gff for
BO06278.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6581703..6582767 | 23..1086 | 99 | | Minus |
BO06278.pep Sequence
Translation from 16 to 1102
> BO06278.pep
MFTTLHSEDTEYSADSVEWLTHDDAATGFFACGTYQLVQEEDEPAAETSA
KRPRKGRVYLYQFEEENCRLERLQCIETSAILDMKWLPAWSSECNPHLAT
VNSLGQMELYEFLQDAKLLQRRTCFSLAEQDSSEEAPLALALDWQHDGQH
IRLAISDSKGGLNLLSYSSQGEIIRERSWLSHGFEAWTCAFDRWSPHILY
SGGDDMLLMAHDLRTKQRAWTNRAHMAGVTCLLSHPRHENHLLTGSYDEQ
LRLFDTRSMKRSLAELDLSGGIWRLKPHPAQPDLILAACMYTNFSVVQLD
VAAPGLSLLGAYEEHKSICYGADWAPWRNKDDASLTMATCSFYDHTLCVS
RVDINKASFLDH
BO06278.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3184-PA | 356 | CG3184-PA | 1..356 | 1..356 | 1916 | 100 | Plus |
