Clone BO06279 Report

Search the DGRC for BO06279

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:79
Vector:pDNR-Dual
Associated Gene/TranscriptCG3565-RA
Protein status:BO06279.pep: validated full length
Sequenced Size:766

Clone Sequence Records

BO06279.3prime Sequence

764 bp (763 high quality bases) assembled on 2005-12-03

> BO06279.3prime
ATGGTCTAGAAAGCTTGCGCTGGCCTTGCCGCCGTCTGGTTTTATCATAA
TCCTGGGATTGGGCGAATCGTCAAACCAAGACATTACATTGGCGCACAGC
GCAAGGACCTCCATCTGGGGATTCGGGGGAAACACGCGACCAAAGCACTC
CAGCAGCATGGGCTGTCGGCGGACCACCTCGTAGTACTCATCAACCCCAA
TGTTGGTATCCTTGTCCAAGTCGAATTTGAGGAACAGCATCTCCTTCATG
TCCAAGCGCAGCTCAATGGATTCGTCTTCATCCTCGCTCTCAAAGAACTT
GCCGACGAAGAACCCAACTTGCTCGCCATTCAACTGCTTGGAATCGCTTT
TATCGTAGACCGAGAATGCGAATTCCATTTTCAGCTGAAGATCTTTGGTG
AAGTATACGGTGAAAAGCCGCACAAAGGACTCCAAGTGTATATGCTTGTC
GGAAAAGAAGTCAGGAGGCCTGGAACCTGGTGTATGGGCTATTCTATACA
CAATGGTCGCAATGAGATCGCGATCCACGATCTCAAACAAGAGCTCCATC
AGCGCAGAGAGTTGCTGAATGGTCATGTACTTTGCTCTCGGCCCATTGAC
CAGCACAAACTTATGGTAGAGCATTACAATGCTAATCAGCTCGTTATGCG
AGAAGATCGAGTCCTTTGCCAGGCGAGCAATGTCCTTCATATACACGTAG
TTGAAGCGGGCATTCTCCAGAGTGTCCAAGGAGCCGTCCAGGTCCTTCAT
GTCGACTGATAACT

BO06279.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-PA 735 CG3565-RA 1..732 750..19 3660 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:20:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-RA 899 CG3565-RA 46..782 755..19 3670 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:20:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24602517..24602913 755..359 1970 99.7 Minus
2R 25286936 2R 24603137..24603371 253..19 1175 100 Minus
2R 25286936 2R 24602968..24603077 361..252 550 100 Minus
Blast to na_te.dros performed 2015-02-12 16:20:09
Subject Length Description Subject Range Query Range Score Percent Strand
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 755..788 241..208 107 79.4 Minus

BO06279.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:04 Download gff for BO06279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-PA 1..735 18..750 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:07 Download gff for BO06279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-PA 1..735 18..750 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:48 Download gff for BO06279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 37..787 12..764 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:34 Download gff for BO06279.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 37..787 12..764 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:34 Download gff for BO06279.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 24602969..24603076 253..360 100 -> Minus
2R 24603138..24603376 12..252 98   Minus
2R 24602508..24602911 361..764 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:48 Download gff for BO06279.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20490031..20490434 361..764 98 -> Minus
arm_2R 20490492..20490599 253..360 100 -> Minus
arm_2R 20490661..20490899 12..252 98   Minus

BO06279.5prime Sequence

764 bp (763 high quality bases) assembled on 2005-12-03

> BO06279.5prime
GAAGTTATCAGTCGACATGAAGGACCTGGACGGCTCCTTGGACACTCTGG
AGAATGCCCGCTTCAACTACGTGTATATGAAGGACATTGCTCGCCTGGCA
AAGGACTCGATCTTCTCGCATAACGAGCTGATTAGCATTGTAATGCTCTA
CCATAAGTTTGTGCTGGTCAATGGGCCGAGAGCAAAGTACATGACCATTC
AGCAACTCTCTGCGCTGATGGAGCTCTTGTTTGAGATCGTGGATCGCGAT
CTCATTGCGACCATTGTGTATAGAATAGCCCATACACCAGGTTCCAGGCC
TCCTGACTTCTTTTCCGACAAGCATATACACTTGGAGTCCTTTGTGCGGC
TTTTCACCGTATACTTCACCAAAGATCTTCAGCTGAAAATGGAATTCGCA
TTCTCGGTCTACGATAAAAGCGATTCCAAGCAGTTGAATGGCGAGCAAGT
TGGGTTCTTCGTCGGCAAGTTCTTTGAGAGCGAGGATGAAGACGAATCCA
TTGAGCTGCGCTTGGACATGAAGGAGATGCTGTTCCTCAAATTCGACTTG
GACAAGGATACCAACATTGGGGTTGATGAGTACTACGAGGTGGTCCGCCG
ACAGCCCATGCTGCTGGAGTGCTTTGGTCGCGTGTTTCCCCCGAATCCCC
AGATGGAGGTCCTTGCGCTGTGCGCCAATGTAATGTCTTGGTTTGACGAT
TCGCCCAATCCCAGGATTATGATAAAACCAGACGGCGGCAAGGCCAGCGC
AAGCTTTCTAGACC

BO06279.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-PA 735 CG3565-RA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-RA 899 CG3565-RA 46..782 12..748 3670 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:50
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24602517..24602913 12..408 1970 99.7 Plus
2R 25286936 2R 24603137..24603371 514..748 1175 100 Plus
2R 25286936 2R 24602968..24603077 406..515 550 100 Plus
Blast to na_te.dros performed 2015-02-12 01:28:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 755..788 526..559 107 79.4 Plus

BO06279.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:05 Download gff for BO06279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-PA 1..735 17..749 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:08 Download gff for BO06279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-PA 1..735 17..749 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:33 Download gff for BO06279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 38..787 4..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:49:53 Download gff for BO06279.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 38..787 4..755 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:49:53 Download gff for BO06279.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 24602969..24603076 407..514 100 -> Plus
2R 24603138..24603376 515..755 98   Plus
2R 24602509..24602911 4..406 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:33 Download gff for BO06279.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20490032..20490434 4..406 99 -> Plus
arm_2R 20490492..20490599 407..514 100 -> Plus
arm_2R 20490661..20490899 515..755 98   Plus

BO06279.complete Sequence

766 bp (766 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ638637

> BO06279.complete
GAAGTTATCAGTCGACATGAAGGACCTGGACGGCTCCTTGGACACTCTGG
AGAATGCCCGCTTCAACTACGTGTATATGAAGGACATTGCTCGCCTGGCA
AAGGACTCGATCTTCTCGCATAACGAGCTGATTAGCATTGTAATGCTCTA
CCATAAGTTTGTGCTGGTCAATGGGCCGAGAGCAAAGTACATGACCATTC
AGCAACTCTCTGCGCTGATGGAGCTCTTGTTTGAGATCGTGGATCGCGAT
CTCATTGCGACCATTGTGTATAGAATAGCCCATACACCAGGTTCCAGGCC
TCCTGACTTCTTTTCCGACAAGCATATACACTTGGAGTCCTTTGTGCGGC
TTTTCACCGTATACTTCACCAAAGATCTTCAGCTGAAAATGGAATTCGCA
TTCTCGGTCTACGATAAAAGCGATTCCAAGCAGTTGAATGGCGAGCAAGT
TGGGTTCTTCGTCGGCAAGTTCTTTGAGAGCGAGGATGAAGACGAATCCA
TTGAGCTGCGCTTGGACATGAAGGAGATGCTGTTCCTCAAATTCGACTTG
GACAAGGATACCAACATTGGGGTTGATGAGTACTACGAGGTGGTCCGCCG
ACAGCCCATGCTGCTGGAGTGCTTTGGTCGCGTGTTTCCCCCGAATCCCC
AGATGGAGGTCCTTGCGCTGTGCGCCAATGTAATGTCTTGGTTTGACGAT
TCGCCCAATCCCAGGATTATGATAAAACCAGACGGCGGCAAGGCCAGCGC
AAGCTTTCTAGACCAT

BO06279.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:54
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-RA 735 CG3565-PA 1..732 17..748 3660 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-RA 899 CG3565-RA 46..782 12..748 3670 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 24602517..24602913 12..408 1970 99.7 Plus
2R 25286936 2R 24603137..24603371 514..748 1175 100 Plus
2R 25286936 2R 24602968..24603077 406..515 550 100 Plus
Blast to na_te.dros performed 2014-11-27 12:59:53
Subject Length Description Subject Range Query Range Score Percent Strand
Dhet\Uhu 1658 Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). 755..788 526..559 107 79.4 Plus

BO06279.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:53 Download gff for BO06279.complete
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 1..735 17..749 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:18 Download gff for BO06279.complete
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 38..787 4..755 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:43 Download gff for BO06279.complete
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 51..782 17..750 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:53 Download gff for BO06279.complete
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 38..787 4..755 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:55 Download gff for BO06279.complete
Subject Subject Range Query Range Percent Splice Strand
CG3565-RA 51..782 17..750 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:55 Download gff for BO06279.complete
Subject Subject Range Query Range Percent Splice Strand
2R 24602522..24602911 17..406 100 -> Plus
2R 24602969..24603076 407..514 100 -> Plus
2R 24603138..24603371 515..750 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:43 Download gff for BO06279.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 20490045..20490434 17..406 100 -> Plus
arm_2R 20490492..20490599 407..514 100 -> Plus
arm_2R 20490661..20490894 515..750 99   Plus

BO06279.pep Sequence

Translation from 16 to 766

> BO06279.pep
MKDLDGSLDTLENARFNYVYMKDIARLAKDSIFSHNELISIVMLYHKFVL
VNGPRAKYMTIQQLSALMELLFEIVDRDLIATIVYRIAHTPGSRPPDFFS
DKHIHLESFVRLFTVYFTKDLQLKMEFAFSVYDKSDSKQLNGEQVGFFVG
KFFESEDEDESIELRLDMKEMLFLKFDLDKDTNIGVDEYYEVVRRQPMLL
ECFGRVFPPNPQMEVLALCANVMSWFDDSPNPRIMIKPDGGKASASFLDH

BO06279.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG3565-PA 244 CG3565-PA 1..244 1..244 1266 100 Plus
sowi-PA 217 CG15178-PA 1..212 1..222 374 36 Plus
CG15177-PA 225 CG15177-PA 1..215 1..224 358 36.4 Plus
sunz-PA 220 CG15179-PA 1..214 1..226 356 37.6 Plus
CG15177-PB 217 CG15177-PB 1..207 1..224 324 35.1 Plus