Clone Sequence Records
BO06279.3prime Sequence
764 bp (763 high quality bases) assembled on 2005-12-03
> BO06279.3prime
ATGGTCTAGAAAGCTTGCGCTGGCCTTGCCGCCGTCTGGTTTTATCATAA
TCCTGGGATTGGGCGAATCGTCAAACCAAGACATTACATTGGCGCACAGC
GCAAGGACCTCCATCTGGGGATTCGGGGGAAACACGCGACCAAAGCACTC
CAGCAGCATGGGCTGTCGGCGGACCACCTCGTAGTACTCATCAACCCCAA
TGTTGGTATCCTTGTCCAAGTCGAATTTGAGGAACAGCATCTCCTTCATG
TCCAAGCGCAGCTCAATGGATTCGTCTTCATCCTCGCTCTCAAAGAACTT
GCCGACGAAGAACCCAACTTGCTCGCCATTCAACTGCTTGGAATCGCTTT
TATCGTAGACCGAGAATGCGAATTCCATTTTCAGCTGAAGATCTTTGGTG
AAGTATACGGTGAAAAGCCGCACAAAGGACTCCAAGTGTATATGCTTGTC
GGAAAAGAAGTCAGGAGGCCTGGAACCTGGTGTATGGGCTATTCTATACA
CAATGGTCGCAATGAGATCGCGATCCACGATCTCAAACAAGAGCTCCATC
AGCGCAGAGAGTTGCTGAATGGTCATGTACTTTGCTCTCGGCCCATTGAC
CAGCACAAACTTATGGTAGAGCATTACAATGCTAATCAGCTCGTTATGCG
AGAAGATCGAGTCCTTTGCCAGGCGAGCAATGTCCTTCATATACACGTAG
TTGAAGCGGGCATTCTCCAGAGTGTCCAAGGAGCCGTCCAGGTCCTTCAT
GTCGACTGATAACT
BO06279.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-PA | 735 | CG3565-RA | 1..732 | 750..19 | 3660 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:20:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-RA | 899 | CG3565-RA | 46..782 | 755..19 | 3670 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:20:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24602517..24602913 | 755..359 | 1970 | 99.7 | Minus |
2R | 25286936 | 2R | 24603137..24603371 | 253..19 | 1175 | 100 | Minus |
2R | 25286936 | 2R | 24602968..24603077 | 361..252 | 550 | 100 | Minus |
Blast to na_te.dros performed 2015-02-12 16:20:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 755..788 | 241..208 | 107 | 79.4 | Minus |
BO06279.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:04 Download gff for
BO06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-PA | 1..735 | 18..750 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:07 Download gff for
BO06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-PA | 1..735 | 18..750 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:48 Download gff for
BO06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 37..787 | 12..764 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:38:34 Download gff for
BO06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 37..787 | 12..764 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:38:34 Download gff for
BO06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24602969..24603076 | 253..360 | 100 | -> | Minus |
2R | 24603138..24603376 | 12..252 | 98 | | Minus |
2R | 24602508..24602911 | 361..764 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:48 Download gff for
BO06279.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20490031..20490434 | 361..764 | 98 | -> | Minus |
arm_2R | 20490492..20490599 | 253..360 | 100 | -> | Minus |
arm_2R | 20490661..20490899 | 12..252 | 98 | | Minus |
BO06279.5prime Sequence
764 bp (763 high quality bases) assembled on 2005-12-03
> BO06279.5prime
GAAGTTATCAGTCGACATGAAGGACCTGGACGGCTCCTTGGACACTCTGG
AGAATGCCCGCTTCAACTACGTGTATATGAAGGACATTGCTCGCCTGGCA
AAGGACTCGATCTTCTCGCATAACGAGCTGATTAGCATTGTAATGCTCTA
CCATAAGTTTGTGCTGGTCAATGGGCCGAGAGCAAAGTACATGACCATTC
AGCAACTCTCTGCGCTGATGGAGCTCTTGTTTGAGATCGTGGATCGCGAT
CTCATTGCGACCATTGTGTATAGAATAGCCCATACACCAGGTTCCAGGCC
TCCTGACTTCTTTTCCGACAAGCATATACACTTGGAGTCCTTTGTGCGGC
TTTTCACCGTATACTTCACCAAAGATCTTCAGCTGAAAATGGAATTCGCA
TTCTCGGTCTACGATAAAAGCGATTCCAAGCAGTTGAATGGCGAGCAAGT
TGGGTTCTTCGTCGGCAAGTTCTTTGAGAGCGAGGATGAAGACGAATCCA
TTGAGCTGCGCTTGGACATGAAGGAGATGCTGTTCCTCAAATTCGACTTG
GACAAGGATACCAACATTGGGGTTGATGAGTACTACGAGGTGGTCCGCCG
ACAGCCCATGCTGCTGGAGTGCTTTGGTCGCGTGTTTCCCCCGAATCCCC
AGATGGAGGTCCTTGCGCTGTGCGCCAATGTAATGTCTTGGTTTGACGAT
TCGCCCAATCCCAGGATTATGATAAAACCAGACGGCGGCAAGGCCAGCGC
AAGCTTTCTAGACC
BO06279.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-PA | 735 | CG3565-RA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:28:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-RA | 899 | CG3565-RA | 46..782 | 12..748 | 3670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24602517..24602913 | 12..408 | 1970 | 99.7 | Plus |
2R | 25286936 | 2R | 24603137..24603371 | 514..748 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 24602968..24603077 | 406..515 | 550 | 100 | Plus |
Blast to na_te.dros performed 2015-02-12 01:28:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 755..788 | 526..559 | 107 | 79.4 | Plus |
BO06279.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:05 Download gff for
BO06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-PA | 1..735 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:08 Download gff for
BO06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-PA | 1..735 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:33 Download gff for
BO06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 38..787 | 4..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:49:53 Download gff for
BO06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 38..787 | 4..755 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:49:53 Download gff for
BO06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24602969..24603076 | 407..514 | 100 | -> | Plus |
2R | 24603138..24603376 | 515..755 | 98 | | Plus |
2R | 24602509..24602911 | 4..406 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:33 Download gff for
BO06279.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20490032..20490434 | 4..406 | 99 | -> | Plus |
arm_2R | 20490492..20490599 | 407..514 | 100 | -> | Plus |
arm_2R | 20490661..20490899 | 515..755 | 98 | | Plus |
BO06279.complete Sequence
766 bp (766 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ638637
> BO06279.complete
GAAGTTATCAGTCGACATGAAGGACCTGGACGGCTCCTTGGACACTCTGG
AGAATGCCCGCTTCAACTACGTGTATATGAAGGACATTGCTCGCCTGGCA
AAGGACTCGATCTTCTCGCATAACGAGCTGATTAGCATTGTAATGCTCTA
CCATAAGTTTGTGCTGGTCAATGGGCCGAGAGCAAAGTACATGACCATTC
AGCAACTCTCTGCGCTGATGGAGCTCTTGTTTGAGATCGTGGATCGCGAT
CTCATTGCGACCATTGTGTATAGAATAGCCCATACACCAGGTTCCAGGCC
TCCTGACTTCTTTTCCGACAAGCATATACACTTGGAGTCCTTTGTGCGGC
TTTTCACCGTATACTTCACCAAAGATCTTCAGCTGAAAATGGAATTCGCA
TTCTCGGTCTACGATAAAAGCGATTCCAAGCAGTTGAATGGCGAGCAAGT
TGGGTTCTTCGTCGGCAAGTTCTTTGAGAGCGAGGATGAAGACGAATCCA
TTGAGCTGCGCTTGGACATGAAGGAGATGCTGTTCCTCAAATTCGACTTG
GACAAGGATACCAACATTGGGGTTGATGAGTACTACGAGGTGGTCCGCCG
ACAGCCCATGCTGCTGGAGTGCTTTGGTCGCGTGTTTCCCCCGAATCCCC
AGATGGAGGTCCTTGCGCTGTGCGCCAATGTAATGTCTTGGTTTGACGAT
TCGCCCAATCCCAGGATTATGATAAAACCAGACGGCGGCAAGGCCAGCGC
AAGCTTTCTAGACCAT
BO06279.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 12:59:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-RA | 735 | CG3565-PA | 1..732 | 17..748 | 3660 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 12:59:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-RA | 899 | CG3565-RA | 46..782 | 12..748 | 3670 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 12:59:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24602517..24602913 | 12..408 | 1970 | 99.7 | Plus |
2R | 25286936 | 2R | 24603137..24603371 | 514..748 | 1175 | 100 | Plus |
2R | 25286936 | 2R | 24602968..24603077 | 406..515 | 550 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 12:59:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dhet\Uhu | 1658 | Dhet\Uhu DHUHUH3 1658bp AKA(S51651) Derived from X63028 (Rel. 36, Last updated, Version 7). | 755..788 | 526..559 | 107 | 79.4 | Plus |
BO06279.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:53 Download gff for
BO06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 1..735 | 17..749 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:18 Download gff for
BO06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 38..787 | 4..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 11:39:43 Download gff for
BO06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 51..782 | 17..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:53 Download gff for
BO06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 38..787 | 4..755 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:08:55 Download gff for
BO06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3565-RA | 51..782 | 17..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:08:55 Download gff for
BO06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24602522..24602911 | 17..406 | 100 | -> | Plus |
2R | 24602969..24603076 | 407..514 | 100 | -> | Plus |
2R | 24603138..24603371 | 515..750 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 11:39:43 Download gff for
BO06279.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20490045..20490434 | 17..406 | 100 | -> | Plus |
arm_2R | 20490492..20490599 | 407..514 | 100 | -> | Plus |
arm_2R | 20490661..20490894 | 515..750 | 99 | | Plus |
BO06279.pep Sequence
Translation from 16 to 766
> BO06279.pep
MKDLDGSLDTLENARFNYVYMKDIARLAKDSIFSHNELISIVMLYHKFVL
VNGPRAKYMTIQQLSALMELLFEIVDRDLIATIVYRIAHTPGSRPPDFFS
DKHIHLESFVRLFTVYFTKDLQLKMEFAFSVYDKSDSKQLNGEQVGFFVG
KFFESEDEDESIELRLDMKEMLFLKFDLDKDTNIGVDEYYEVVRRQPMLL
ECFGRVFPPNPQMEVLALCANVMSWFDDSPNPRIMIKPDGGKASASFLDH
BO06279.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3565-PA | 244 | CG3565-PA | 1..244 | 1..244 | 1266 | 100 | Plus |
sowi-PA | 217 | CG15178-PA | 1..212 | 1..222 | 374 | 36 | Plus |
CG15177-PA | 225 | CG15177-PA | 1..215 | 1..224 | 358 | 36.4 | Plus |
sunz-PA | 220 | CG15179-PA | 1..214 | 1..226 | 356 | 37.6 | Plus |
CG15177-PB | 217 | CG15177-PB | 1..207 | 1..224 | 324 | 35.1 | Plus |