Clone BO06280 Report

Search the DGRC for BO06280

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:80
Vector:pDNR-Dual
Associated Gene/TranscriptCG1394-RA
Protein status:BO06280.pep: Inserted from web
Sequenced Size:534

Clone Sequence Records

BO06280.3prime Sequence

532 bp (531 high quality bases) assembled on 2005-12-03

> BO06280.3prime
ATGGTCTAGAAAGCTTGCCCAGAAGCCACCCTTGGATGCACTGCCTCCGC
CGTAGTTCATGCTCATGTCCATGCCGTTGTAGGCGCAGAAGGCTTCGCCA
TTGTCGATGCACGGTTCATTTCGTCCGGGTATGTCTCCATATATTGAACG
GTCCACGGGTGGCGGCACTATATGCTGGGCTCCTGTAATGGGCATGCCAC
ACGACATGGCACCCGGCATGGCACCCGGCATGGCACCCGACATGGCACCC
GGCATGACGCCCGGCATGGCACCCGGCATGGCAGCCGGCATGCCACCGGC
TCCTCCGGCGTATGGTAGCATGGAGTGTGCCTGAGCTGCGCCCTGGCTAG
GCCAACCTCCTAGTCCGCCGGCTGATCCTAATCCTGGTGCTGCTGCTGTT
GCTGATAGTGGTGGTGGAGCGGCTGCTCCAGCGGCAGAGTGCTGCATGAA
GTCACCCATCTGCGGATAAACGGGAGCATTCAACGGCTGGCCATTCCAGT
ACGAAAACGAATTCGACATGTCGACGATAACT

BO06280.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-PA 504 CG1394-RA 1..501 519..19 2505 100 Minus
CG15200-PA 342 CG15200-RA 253..309 117..61 160 91.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:00:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-RB 868 CG1394-RB 170..670 519..19 2505 100 Minus
CG1394-RA 842 CG1394-RA 170..670 519..19 2505 100 Minus
CG15200-RA 546 CG15200-RA 378..434 117..61 210 91.2 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:00:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11170009..11170509 19..519 2505 100 Plus
X 23542271 X 11183308..11183364 117..61 210 91.2 Minus
Blast to na_te.dros performed 2015-02-11 03:00:34
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6838 431..369 153 71.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2411 434..369 150 69.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2379 427..371 141 71.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2417 437..369 138 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2363 426..369 137 70.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6885 445..358 131 62.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6670..6763 459..369 129 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6805 437..369 129 65.2 Minus
roo 9092 roo DM_ROO 9092bp 1064..1132 437..369 129 65.2 Minus
roo 9092 roo DM_ROO 9092bp 1090..1163 445..371 129 65.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2852 435..369 128 65.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6848..6914 437..371 128 65.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6784 431..369 126 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6817 431..369 126 66.7 Minus
roo 9092 roo DM_ROO 9092bp 1082..1144 431..369 126 66.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 434..371 122 65.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2852 445..357 119 64 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6833..6899 437..371 119 64.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6794 431..371 116 65.6 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6850 444..369 116 63.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2422 445..385 113 67.2 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1528..1597 427..357 109 63.4 Minus

BO06280.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:06 Download gff for BO06280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-PA 1..504 18..519 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:09 Download gff for BO06280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-PA 1..504 18..519 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:23 Download gff for BO06280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 133..640 19..527 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:35 Download gff for BO06280.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 163..670 19..527 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:35 Download gff for BO06280.3prime
Subject Subject Range Query Range Percent Splice Strand
X 11170009..11170516 19..527 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:23 Download gff for BO06280.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11064042..11064549 19..527 99   Plus

BO06280.5prime Sequence

532 bp (531 high quality bases) assembled on 2005-12-03

> BO06280.5prime
GAAGTTATCGTCGACATGTCGAATTCGTTTTCGTACTGGAATGGCCAGCC
GTTGAATGCTCCCGTTTATCCGCAGATGGGTGACTTCATGCAGCACTCTG
CCGCTGGAGCAGCCGCTCCACCACCACTATCAGCAACAGCAGCAGCACCA
GGATTAGGATCAGCCGGCGGACTAGGAGGTTGGCCTAGCCAGGGCGCAGC
TCAGGCACACTCCATGCTACCATACGCCGGAGGAGCCGGTGGCATGCCGG
CTGCCATGCCGGGTGCCATGCCGGGCGTCATGCCGGGTGCCATGTCGGGT
GCCATGCCGGGTGCCATGCCGGGTGCCATGTCGTGTGGCATGCCCATTAC
AGGAGCCCAGCATATAGTGCCGCCACCCGTGGACCGTTCAATATATGGAG
ACATACCCGGACGAAATGAACCGTGCATCGACAATGGCGAAGCCTTCTGC
GCCTACAACGGCATGGACATGAGCATGAACTACGGCGGAGGCAGTGCATC
CAAGGGTGGCTTCTGGGCAAGCTTTCTAGACC

BO06280.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-PA 504 CG1394-RA 1..501 16..516 2505 100 Plus
CG15200-PA 342 CG15200-RA 253..309 418..474 160 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-RB 868 CG1394-RB 170..670 16..516 2505 100 Plus
CG1394-RA 842 CG1394-RA 170..670 16..516 2505 100 Plus
CG15200-RA 546 CG15200-RA 378..434 418..474 210 91.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11170009..11170509 516..16 2505 100 Minus
X 23542271 X 11183308..11183364 418..474 210 91.2 Plus
Blast to na_te.dros performed 2015-02-13 01:04:36
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6838 104..166 153 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2411 101..166 150 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2379 108..164 141 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2417 98..166 138 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2363 109..166 137 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6885 90..177 131 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6670..6763 76..166 129 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6805 98..166 129 65.2 Plus
roo 9092 roo DM_ROO 9092bp 1064..1132 98..166 129 65.2 Plus
roo 9092 roo DM_ROO 9092bp 1090..1163 90..164 129 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2852 100..166 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6848..6914 98..164 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6784 104..166 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6817 104..166 126 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1082..1144 104..166 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 101..164 122 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2852 90..178 119 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6833..6899 98..164 119 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6794 104..164 116 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6850 91..166 116 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2422 90..150 113 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1528..1597 108..178 109 63.4 Plus

BO06280.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:07 Download gff for BO06280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-PA 1..504 16..517 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:10 Download gff for BO06280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-PA 1..504 16..517 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:15:41 Download gff for BO06280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 133..640 8..516 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:46 Download gff for BO06280.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 163..670 8..516 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:46 Download gff for BO06280.5prime
Subject Subject Range Query Range Percent Splice Strand
X 11170009..11170516 8..516 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:15:41 Download gff for BO06280.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 11064042..11064549 8..516 99   Minus

BO06280.complete Sequence

534 bp assembled on 2008-08-15

GenBank Submission: KX794285

> BO06280.complete
GAAGTTATCGTCGACATGTCGAATTCGTTTTCGTACTGGAATGGCCAGCC
GTTGAATGCTCCCGTTTATCCGCAGATGGGTGACTTCATGCAGCACTCTG
CCGCTGGAGCAGCCGCTCCACCACCACTATCAGCAACAGCAGCAGCACCA
GGATTAGGATCAGCCGGCGGACTAGGAGGTTGGCCTAGCCAGGGCGCAGC
TCAGGCACACTCCATGCTACCATACGCCGGAGGAGCCGGTGGCATGCCGG
CTGCCATGCCGGGTGCCATGCCGGGCGTCATGCCGGGTGCCATGTCGGGT
GCCATGCCGGGTGCCATGCCGGGTGCCATGTCGTGTGGCATGCCCATTAC
AGGAGCCCAGCATATAGTGCCGCCACCCGTGGACCGTTCAATATATGGAG
ACATACCCGGACGAAATGAACCGTGCATCGACAATGGCGAAGCCTTCTGC
GCCTACAACGGCATGGACATGAGCATGAACTACGGCGGAGGCAGTGCATC
CAAGGGTGGCTTCTGGGCAAGCTTTCTAGACCAT

BO06280.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-RB 504 CG1394-PB 1..501 16..516 2505 100 Plus
CG1394-RA 504 CG1394-PA 1..501 16..516 2505 100 Plus
CG15200-RA 342 CG15200-PA 253..309 418..474 210 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-RB 868 CG1394-RB 170..670 16..516 2505 100 Plus
CG1394-RA 842 CG1394-RA 170..670 16..516 2505 100 Plus
CG15200-RA 546 CG15200-RA 378..434 418..474 210 91.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:31
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11170009..11170509 516..16 2505 100 Minus
X 23542271 X 11183308..11183364 418..474 210 91.2 Plus
Blast to na_te.dros performed 2014-11-27 20:14:33
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6838 104..166 153 71.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2346..2411 101..166 150 69.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2323..2379 108..164 141 71.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2349..2417 98..166 138 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2363 109..166 137 70.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6799..6885 90..177 131 62.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6670..6763 76..166 129 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6737..6805 98..166 129 65.2 Plus
roo 9092 roo DM_ROO 9092bp 1064..1132 98..166 129 65.2 Plus
roo 9092 roo DM_ROO 9092bp 1090..1163 90..164 129 65.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2786..2852 100..166 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6848..6914 98..164 128 65.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6722..6784 104..166 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6755..6817 104..166 126 66.7 Plus
roo 9092 roo DM_ROO 9092bp 1082..1144 104..166 126 66.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2310..2373 101..164 122 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6833..6899 98..164 119 64.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2768..2852 90..178 119 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6734..6794 104..164 116 65.6 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6776..6850 91..166 116 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2363..2422 90..150 113 67.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1528..1597 108..178 109 63.4 Plus

BO06280.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:21 Download gff for BO06280.complete
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 133..640 8..516 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:25 Download gff for BO06280.complete
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 142..640 18..518 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:41 Download gff for BO06280.complete
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 142..640 18..518 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:52 Download gff for BO06280.complete
Subject Subject Range Query Range Percent Splice Strand
CG1394-RA 172..670 18..518 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:52 Download gff for BO06280.complete
Subject Subject Range Query Range Percent Splice Strand
X 11170007..11170507 18..518 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:25 Download gff for BO06280.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11064040..11064540 18..518 99   Minus

BO06280.pep Sequence

Translation from 15 to 534

> BO06280.pep
MSNSFSYWNGQPLNAPVYPQMGDFMQHSAAGAAAPPPLSATAAAPGLGSA
GGLGGWPSQGAAQAHSMLPYAGGAGGMPAAMPGAMPGVMPGAMSGAMPGA
MPGAMSCGMPITGAQHIVPPPVDRSIYGDIPGRNEPCIDNGEAFCAYNGM
DMSMNYGGGSASKGGFWASFLDH

BO06280.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG1394-PB 167 CG1394-PB 1..167 1..167 920 100 Plus
CG1394-PA 167 CG1394-PA 1..167 1..167 920 100 Plus