Clone Sequence Records
BO06280.3prime Sequence
532 bp (531 high quality bases) assembled on 2005-12-03
> BO06280.3prime
ATGGTCTAGAAAGCTTGCCCAGAAGCCACCCTTGGATGCACTGCCTCCGC
CGTAGTTCATGCTCATGTCCATGCCGTTGTAGGCGCAGAAGGCTTCGCCA
TTGTCGATGCACGGTTCATTTCGTCCGGGTATGTCTCCATATATTGAACG
GTCCACGGGTGGCGGCACTATATGCTGGGCTCCTGTAATGGGCATGCCAC
ACGACATGGCACCCGGCATGGCACCCGGCATGGCACCCGACATGGCACCC
GGCATGACGCCCGGCATGGCACCCGGCATGGCAGCCGGCATGCCACCGGC
TCCTCCGGCGTATGGTAGCATGGAGTGTGCCTGAGCTGCGCCCTGGCTAG
GCCAACCTCCTAGTCCGCCGGCTGATCCTAATCCTGGTGCTGCTGCTGTT
GCTGATAGTGGTGGTGGAGCGGCTGCTCCAGCGGCAGAGTGCTGCATGAA
GTCACCCATCTGCGGATAAACGGGAGCATTCAACGGCTGGCCATTCCAGT
ACGAAAACGAATTCGACATGTCGACGATAACT
BO06280.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-PA | 504 | CG1394-RA | 1..501 | 519..19 | 2505 | 100 | Minus |
CG15200-PA | 342 | CG15200-RA | 253..309 | 117..61 | 160 | 91.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:00:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-RB | 868 | CG1394-RB | 170..670 | 519..19 | 2505 | 100 | Minus |
CG1394-RA | 842 | CG1394-RA | 170..670 | 519..19 | 2505 | 100 | Minus |
CG15200-RA | 546 | CG15200-RA | 378..434 | 117..61 | 210 | 91.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:00:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11170009..11170509 | 19..519 | 2505 | 100 | Plus |
X | 23542271 | X | 11183308..11183364 | 117..61 | 210 | 91.2 | Minus |
Blast to na_te.dros performed 2015-02-11 03:00:34
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6838 | 431..369 | 153 | 71.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2411 | 434..369 | 150 | 69.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2379 | 427..371 | 141 | 71.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2417 | 437..369 | 138 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2363 | 426..369 | 137 | 70.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6885 | 445..358 | 131 | 62.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6670..6763 | 459..369 | 129 | 64.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6805 | 437..369 | 129 | 65.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1132 | 437..369 | 129 | 65.2 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1163 | 445..371 | 129 | 65.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2852 | 435..369 | 128 | 65.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6848..6914 | 437..371 | 128 | 65.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6784 | 431..369 | 126 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 431..369 | 126 | 66.7 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1144 | 431..369 | 126 | 66.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 434..371 | 122 | 65.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2852 | 445..357 | 119 | 64 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6833..6899 | 437..371 | 119 | 64.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6794 | 431..371 | 116 | 65.6 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6850 | 444..369 | 116 | 63.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2422 | 445..385 | 113 | 67.2 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1597 | 427..357 | 109 | 63.4 | Minus |
BO06280.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:06 Download gff for
BO06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-PA | 1..504 | 18..519 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:09 Download gff for
BO06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-PA | 1..504 | 18..519 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:23 Download gff for
BO06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 133..640 | 19..527 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:42:35 Download gff for
BO06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 163..670 | 19..527 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:42:35 Download gff for
BO06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11170009..11170516 | 19..527 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:23 Download gff for
BO06280.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11064042..11064549 | 19..527 | 99 | | Plus |
BO06280.5prime Sequence
532 bp (531 high quality bases) assembled on 2005-12-03
> BO06280.5prime
GAAGTTATCGTCGACATGTCGAATTCGTTTTCGTACTGGAATGGCCAGCC
GTTGAATGCTCCCGTTTATCCGCAGATGGGTGACTTCATGCAGCACTCTG
CCGCTGGAGCAGCCGCTCCACCACCACTATCAGCAACAGCAGCAGCACCA
GGATTAGGATCAGCCGGCGGACTAGGAGGTTGGCCTAGCCAGGGCGCAGC
TCAGGCACACTCCATGCTACCATACGCCGGAGGAGCCGGTGGCATGCCGG
CTGCCATGCCGGGTGCCATGCCGGGCGTCATGCCGGGTGCCATGTCGGGT
GCCATGCCGGGTGCCATGCCGGGTGCCATGTCGTGTGGCATGCCCATTAC
AGGAGCCCAGCATATAGTGCCGCCACCCGTGGACCGTTCAATATATGGAG
ACATACCCGGACGAAATGAACCGTGCATCGACAATGGCGAAGCCTTCTGC
GCCTACAACGGCATGGACATGAGCATGAACTACGGCGGAGGCAGTGCATC
CAAGGGTGGCTTCTGGGCAAGCTTTCTAGACC
BO06280.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-PA | 504 | CG1394-RA | 1..501 | 16..516 | 2505 | 100 | Plus |
CG15200-PA | 342 | CG15200-RA | 253..309 | 418..474 | 160 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-RB | 868 | CG1394-RB | 170..670 | 16..516 | 2505 | 100 | Plus |
CG1394-RA | 842 | CG1394-RA | 170..670 | 16..516 | 2505 | 100 | Plus |
CG15200-RA | 546 | CG15200-RA | 378..434 | 418..474 | 210 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:04:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11170009..11170509 | 516..16 | 2505 | 100 | Minus |
X | 23542271 | X | 11183308..11183364 | 418..474 | 210 | 91.2 | Plus |
Blast to na_te.dros performed 2015-02-13 01:04:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6838 | 104..166 | 153 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2411 | 101..166 | 150 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2379 | 108..164 | 141 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2417 | 98..166 | 138 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2363 | 109..166 | 137 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6885 | 90..177 | 131 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6670..6763 | 76..166 | 129 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6805 | 98..166 | 129 | 65.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1132 | 98..166 | 129 | 65.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1163 | 90..164 | 129 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2852 | 100..166 | 128 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6848..6914 | 98..164 | 128 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6784 | 104..166 | 126 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 104..166 | 126 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1144 | 104..166 | 126 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 101..164 | 122 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2852 | 90..178 | 119 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6833..6899 | 98..164 | 119 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6794 | 104..164 | 116 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6850 | 91..166 | 116 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2422 | 90..150 | 113 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1597 | 108..178 | 109 | 63.4 | Plus |
BO06280.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:07 Download gff for
BO06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-PA | 1..504 | 16..517 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:10 Download gff for
BO06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-PA | 1..504 | 16..517 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:15:41 Download gff for
BO06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 133..640 | 8..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:46 Download gff for
BO06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 163..670 | 8..516 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:46 Download gff for
BO06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11170009..11170516 | 8..516 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:15:41 Download gff for
BO06280.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11064042..11064549 | 8..516 | 99 | | Minus |
BO06280.complete Sequence
534 bp assembled on 2008-08-15
GenBank Submission: KX794285
> BO06280.complete
GAAGTTATCGTCGACATGTCGAATTCGTTTTCGTACTGGAATGGCCAGCC
GTTGAATGCTCCCGTTTATCCGCAGATGGGTGACTTCATGCAGCACTCTG
CCGCTGGAGCAGCCGCTCCACCACCACTATCAGCAACAGCAGCAGCACCA
GGATTAGGATCAGCCGGCGGACTAGGAGGTTGGCCTAGCCAGGGCGCAGC
TCAGGCACACTCCATGCTACCATACGCCGGAGGAGCCGGTGGCATGCCGG
CTGCCATGCCGGGTGCCATGCCGGGCGTCATGCCGGGTGCCATGTCGGGT
GCCATGCCGGGTGCCATGCCGGGTGCCATGTCGTGTGGCATGCCCATTAC
AGGAGCCCAGCATATAGTGCCGCCACCCGTGGACCGTTCAATATATGGAG
ACATACCCGGACGAAATGAACCGTGCATCGACAATGGCGAAGCCTTCTGC
GCCTACAACGGCATGGACATGAGCATGAACTACGGCGGAGGCAGTGCATC
CAAGGGTGGCTTCTGGGCAAGCTTTCTAGACCAT
BO06280.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:14:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-RB | 504 | CG1394-PB | 1..501 | 16..516 | 2505 | 100 | Plus |
CG1394-RA | 504 | CG1394-PA | 1..501 | 16..516 | 2505 | 100 | Plus |
CG15200-RA | 342 | CG15200-PA | 253..309 | 418..474 | 210 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:14:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-RB | 868 | CG1394-RB | 170..670 | 16..516 | 2505 | 100 | Plus |
CG1394-RA | 842 | CG1394-RA | 170..670 | 16..516 | 2505 | 100 | Plus |
CG15200-RA | 546 | CG15200-RA | 378..434 | 418..474 | 210 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:14:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 11170009..11170509 | 516..16 | 2505 | 100 | Minus |
X | 23542271 | X | 11183308..11183364 | 418..474 | 210 | 91.2 | Plus |
Blast to na_te.dros performed 2014-11-27 20:14:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6838 | 104..166 | 153 | 71.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2346..2411 | 101..166 | 150 | 69.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2323..2379 | 108..164 | 141 | 71.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2349..2417 | 98..166 | 138 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2363 | 109..166 | 137 | 70.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6799..6885 | 90..177 | 131 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6670..6763 | 76..166 | 129 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6737..6805 | 98..166 | 129 | 65.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1064..1132 | 98..166 | 129 | 65.2 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1090..1163 | 90..164 | 129 | 65.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2786..2852 | 100..166 | 128 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6848..6914 | 98..164 | 128 | 65.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6784 | 104..166 | 126 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6817 | 104..166 | 126 | 66.7 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1082..1144 | 104..166 | 126 | 66.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2310..2373 | 101..164 | 122 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6833..6899 | 98..164 | 119 | 64.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2768..2852 | 90..178 | 119 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6794 | 104..164 | 116 | 65.6 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6776..6850 | 91..166 | 116 | 63.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2363..2422 | 90..150 | 113 | 67.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1528..1597 | 108..178 | 109 | 63.4 | Plus |
BO06280.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:48:21 Download gff for
BO06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 133..640 | 8..516 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:05:25 Download gff for
BO06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 142..640 | 18..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-09-04 11:00:41 Download gff for
BO06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 142..640 | 18..518 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:17:52 Download gff for
BO06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1394-RA | 172..670 | 18..518 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:17:52 Download gff for
BO06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 11170007..11170507 | 18..518 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:05:25 Download gff for
BO06280.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 11064040..11064540 | 18..518 | 99 | | Minus |
BO06280.pep Sequence
Translation from 15 to 534
> BO06280.pep
MSNSFSYWNGQPLNAPVYPQMGDFMQHSAAGAAAPPPLSATAAAPGLGSA
GGLGGWPSQGAAQAHSMLPYAGGAGGMPAAMPGAMPGVMPGAMSGAMPGA
MPGAMSCGMPITGAQHIVPPPVDRSIYGDIPGRNEPCIDNGEAFCAYNGM
DMSMNYGGGSASKGGFWASFLDH
BO06280.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 00:32:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1394-PB | 167 | CG1394-PB | 1..167 | 1..167 | 920 | 100 | Plus |
CG1394-PA | 167 | CG1394-PA | 1..167 | 1..167 | 920 | 100 | Plus |