Clone Sequence Records
BO06292.3prime Sequence
884 bp (848 high quality bases) assembled on 2005-12-03
> BO06292.3prime
ATGGTCTAGAAAGCTTGCAAAGGTGGTGACAAAGCGCGACATTTCCGGCA
GCATGACACTCAGATCCTCGATGTTGTTCTCCAGCGCACTCTCGTCCGTT
GTGTCCAGTTCGCTGGTCCGCACGCTGTTCGCCCAGTCGGAGGAGTCTAG
ATCCTGTCCTGCTCCTCGCGCCTGATCCTCCTGCTGTTCCTGGGCGTTGA
GGCTAGCTCGACTGGCGAGACCATCGCAAATATTGGCGGGATCTGACGGC
AGCTCCACATAAAGGTTCGTCTGGCGCAAAGCCATTAGCTGTAGATCGCG
GTGCAGGCTGATGGGATTCTTGGACAGGTTGAGCATGTGAAGAGTCCGCA
ACTCCTCCAGTTGTGACCGCGTGGGCATCTCGTCAATACAATTTTCGTTG
AGAAAAGCAAACCGCAGCTTCTGCATGGCCATCAGCATCCTGGGCAGCCG
TCGCAATCGATTCCCCTTAAGATTCAGATGCACCAAATTTCCCAGCAACG
CCATGGTCAGTGGCACTTCGCTGAGTTCGCAGCCCTCGGCTGTTAGCCAA
CGCAGGGAGGACAGAGCGCCTATGGCATCGGGCAACTTCTTCAAGGGATT
TCCCCGTACGCCCAGCGTCTCGAGGTGTTCACAGTTACGAATTTCGTTGG
GCAGCTCCAGGAGCCCAGTATTATTGCACCAGAACGTCTCCAGCTGAGTG
AGGTATCCCAGTTCGGGTGGCAAACTACTAATGTTATTGCAGCTGATGTT
GAGAAACTTCAGCCGGACCAAACGACAGATGCAGAGCGGGAATTCGTCCA
GTTTATTGTAGTCCAACGTGAGGACCTGAAGTCGCATCAAACTACCAATG
GAGGATGGAATCTTTGTTAGCTTGTTTTGGTTGA
BO06292.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-PA | 1026 | CG10307-RA | 158..1023 | 884..19 | 4330 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:54:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-RB | 1177 | CG10307-RB | 243..1108 | 884..19 | 4330 | 100 | Minus |
CG10307-RA | 1362 | CG10307-RA | 428..1293 | 884..19 | 4330 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:54:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21689282..21689868 | 863..277 | 2935 | 100 | Minus |
2R | 25286936 | 2R | 21689926..21690184 | 277..19 | 1295 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-04 19:54:29 has no hits.
BO06292.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:30 Download gff for
BO06292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-PA | 159..1026 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:44 Download gff for
BO06292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-PA | 159..1026 | 16..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:28 Download gff for
BO06292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 290..1164 | 10..883 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:44:54 Download gff for
BO06292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 429..1303 | 10..883 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:44:54 Download gff for
BO06292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21689201..21689222 | 862..883 | 100 | -> | Minus |
2R | 21689284..21689868 | 277..861 | 100 | -> | Minus |
2R | 21689927..21690194 | 10..276 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:28 Download gff for
BO06292.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17577432..17577699 | 10..276 | 98 | | Minus |
arm_2R | 17576706..17576727 | 862..883 | 100 | -> | Minus |
arm_2R | 17576789..17577373 | 277..861 | 100 | -> | Minus |
BO06292.5prime Sequence
867 bp (785 high quality bases) assembled on 2005-12-03
> BO06292.5prime
GAAGTTATCAGTCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACT
ACGTGCTGGCCAATTGCGAGGATGCCATATACAAAAAGGCATTCTCCCTG
AATCTGTCCCACTACCAAATCTCCGACGTTCCGGGCATCATAGAGAAGTG
CGAGACGCTGATGAAGCTGTTCCTCAACCAAAACAAGCTAACAAAGATTC
CATCCTCCATTGGTAGTTTGATGCGACTTCAGGTCCTCACGTTGGACTAC
AATAAACTGGACGAATTCCCGCTCTGCATCTGTCGTTTGGTCCGGCTGAA
GTTTCTCAACATCAGCTGCAATAACATTAGTAGTTTGCCACCCGAACTGG
GATACCTCACTCAGCTGGAGACGTTCTGGTGCAATAATACTGGGCTCCTG
GAGCTGCCCAACGAAATTCGTAACTGTGAACACCTCGAGACGCTGGGCGT
ACGGGGAAATCCCTTGAAGAAGTTGCCCGATGCCATAGGCGCTCTGTCCT
CCCTGCGTTGGCTAACAGCCGAGGGCTGCGAACTCAGCGAAGTGCCACTG
ACCATGGCGTTGCTGGGAAATTTGGTGCATCTGAATCTTAAGGGGAATCG
ATTGCGACGGCTGCCCAGGATGCTGATGGCCATGCAGAAGCTGCGGTTTG
CTTTTCTCAACGAAAATTGTATTGACGAGATGCCCACGCGGTCACAACTG
GAGGAGTTGCGGACTCTTCACATGCTCAACCTGTCCAAGAATCCCATCAG
CCTGCACCGCGATCTACAGCTAATGGCTTTGCGCCAGACGAACCTTTATG
TGGAGCTGCCGTCAGATCCCGCCAATATTTGCGATGGTCTCGCCAGTCGA
GCTAGCCCTCACGCCCA
BO06292.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-PA | 1026 | CG10307-RA | 1..841 | 17..857 | 4205 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:03:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-RB | 1177 | CG10307-RB | 82..936 | 13..867 | 4230 | 99.8 | Plus |
CG10307-RA | 1362 | CG10307-RA | 267..1121 | 13..867 | 4230 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21689282..21689868 | 195..781 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 21689039..21689222 | 13..196 | 920 | 100 | Plus |
2R | 25286936 | 2R | 21689926..21690012 | 781..867 | 390 | 96.6 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:03:40 has no hits.
BO06292.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:32 Download gff for
BO06292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:46 Download gff for
BO06292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-PA | 1..850 | 17..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:42 Download gff for
BO06292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 121..981 | 7..866 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:52:31 Download gff for
BO06292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 260..1120 | 7..866 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:52:31 Download gff for
BO06292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21689032..21689222 | 7..196 | 98 | -> | Plus |
2R | 21689284..21689868 | 197..781 | 100 | -> | Plus |
2R | 21689927..21690011 | 782..866 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:42 Download gff for
BO06292.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17576537..17576727 | 7..196 | 98 | -> | Plus |
arm_2R | 17576789..17577373 | 197..781 | 100 | -> | Plus |
arm_2R | 17577432..17577516 | 782..866 | 97 | | Plus |
BO06292.complete Sequence
1057 bp (1057 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630332
> BO06292.complete
GAAGTTATCAGTCGACATGGAGAAGGTTTGTCAGTTTTTCCGCAACAACT
ACGTGCTGGCCAATTGCGAGGATGCCATATACAAAAAGGCATTCTCCCTG
AATCTGTCCCACTACCAAATCTCCGACGTTCCGGGCATCATAGAGAAGTG
CGAGACGCTGATGAAGCTGTTCCTCAACCAAAACAAGCTAACAAAGATTC
CATCCTCCATTGGTAGTTTGATGCGACTTCAGGTCCTCACGTTGGACTAC
AATAAACTGGACGAATTCCCGCTCTGCATCTGTCGTTTGGTCCGGCTGAA
GTTTCTCAACATCAGCTGCAATAACATTAGTAGTTTGCCACCCGAACTGG
GATACCTCACTCAGCTGGAGACGTTCTGGTGCAATAATACTGGGCTCCTG
GAGCTGCCCAACGAAATTCGTAACTGTGAACACCTCGAGACGCTGGGCGT
ACGGGGAAATCCCTTGAAGAAGTTGCCCGATGCCATAGGCGCTCTGTCCT
CCCTGCGTTGGCTAACAGCCGAGGGCTGCGAACTCAGCGAAGTGCCACTG
ACCATGGCGTTGCTGGGAAATTTGGTGCATCTGAATCTTAAGGGGAATCG
ATTGCGACGGCTGCCCAGGATGCTGATGGCCATGCAGAAGCTGCGGTTTG
CTTTTCTCAACGAAAATTGTATTGACGAGATGCCCACGCGGTCACAACTG
GAGGAGTTGCGGACTCTTCACATGCTCAACCTGTCCAAGAATCCCATCAG
CCTGCACCGCGATCTACAGCTAATGGCTTTGCGCCAGACGAACCTTTATG
TGGAGCTGCCGTCAGATCCCGCCAATATTTGCGATGGTCTCGCCAGTCGA
GCTAGCCTCAACGCCCAGGAACAGCAGGAGGATCAGGCGCGAGGAGCAGG
ACAGGATCTAGACTCCTCCGACTGGGCGAACAGCGTGCGGACCAGCGAAC
TGGACACAACGGACGAGAGTGCGCTGGAGAACAACATCGAGGATCTGAGT
GTCATGCTGCCGGAAATGTCGCGCTTTGTCACCACCTTTGCAAGCTTTCT
AGACCAT
BO06292.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:49:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-RB | 1026 | CG10307-PB | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG10307-RA | 1026 | CG10307-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:49:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-RB | 1177 | CG10307-RB | 82..1108 | 13..1039 | 5135 | 100 | Plus |
CG10307-RA | 1362 | CG10307-RA | 267..1293 | 13..1039 | 5135 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:49:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 21689282..21689868 | 195..781 | 2935 | 100 | Plus |
2R | 25286936 | 2R | 21689926..21690184 | 781..1039 | 1295 | 100 | Plus |
2R | 25286936 | 2R | 21689039..21689222 | 13..196 | 920 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 13:49:45 has no hits.
BO06292.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:55 Download gff for
BO06292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 1..1026 | 17..1042 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:21 Download gff for
BO06292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 121..1164 | 7..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:26:01 Download gff for
BO06292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 132..1154 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:55 Download gff for
BO06292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 121..1164 | 7..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:56:50 Download gff for
BO06292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10307-RA | 271..1293 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:56:50 Download gff for
BO06292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 21689043..21689222 | 17..196 | 100 | -> | Plus |
2R | 21689284..21689868 | 197..781 | 100 | -> | Plus |
2R | 21689927..21690184 | 782..1041 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:26:01 Download gff for
BO06292.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17576548..17576727 | 17..196 | 100 | -> | Plus |
arm_2R | 17576789..17577373 | 197..781 | 100 | -> | Plus |
arm_2R | 17577432..17577689 | 782..1041 | 99 | | Plus |
BO06292.pep Sequence
Translation from 16 to 1057
> BO06292.pep
MEKVCQFFRNNYVLANCEDAIYKKAFSLNLSHYQISDVPGIIEKCETLMK
LFLNQNKLTKIPSSIGSLMRLQVLTLDYNKLDEFPLCICRLVRLKFLNIS
CNNISSLPPELGYLTQLETFWCNNTGLLELPNEIRNCEHLETLGVRGNPL
KKLPDAIGALSSLRWLTAEGCELSEVPLTMALLGNLVHLNLKGNRLRRLP
RMLMAMQKLRFAFLNENCIDEMPTRSQLEELRTLHMLNLSKNPISLHRDL
QLMALRQTNLYVELPSDPANICDGLASRASLNAQEQQEDQARGAGQDLDS
SDWANSVRTSELDTTDESALENNIEDLSVMLPEMSRFVTTFASFLDH
BO06292.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10307-PB | 341 | CG10307-PB | 1..341 | 1..341 | 1762 | 100 | Plus |
CG10307-PA | 341 | CG10307-PA | 1..341 | 1..341 | 1762 | 100 | Plus |
scrib-PC | 1247 | CG43398-PC | 112..357 | 29..270 | 263 | 32.5 | Plus |
scrib-PI | 1711 | CG43398-PI | 112..357 | 29..270 | 263 | 32.5 | Plus |
scrib-PP | 1729 | CG43398-PP | 112..357 | 29..270 | 263 | 32.5 | Plus |
scrib-PC | 1247 | CG43398-PC | 65..284 | 28..249 | 234 | 28.8 | Plus |
scrib-PI | 1711 | CG43398-PI | 65..284 | 28..249 | 234 | 28.8 | Plus |
scrib-PC | 1247 | CG43398-PC | 42..254 | 28..242 | 226 | 30.7 | Plus |
scrib-PI | 1711 | CG43398-PI | 42..254 | 28..242 | 226 | 30.7 | Plus |
scrib-PC | 1247 | CG43398-PC | 180..352 | 28..200 | 221 | 31.2 | Plus |
scrib-PI | 1711 | CG43398-PI | 180..352 | 28..200 | 221 | 31.2 | Plus |
scrib-PC | 1247 | CG43398-PC | 134..348 | 28..244 | 217 | 30.4 | Plus |
scrib-PI | 1711 | CG43398-PI | 134..348 | 28..244 | 217 | 30.4 | Plus |
scrib-PC | 1247 | CG43398-PC | 156..433 | 27..300 | 210 | 27.5 | Plus |
scrib-PI | 1711 | CG43398-PI | 156..433 | 27..300 | 210 | 27.5 | Plus |
scrib-PC | 1247 | CG43398-PC | 25..210 | 58..244 | 197 | 29.8 | Plus |
scrib-PC | 1247 | CG43398-PC | 216..384 | 18..192 | 197 | 32 | Plus |
scrib-PI | 1711 | CG43398-PI | 25..210 | 58..244 | 197 | 29.8 | Plus |
scrib-PI | 1711 | CG43398-PI | 216..384 | 18..192 | 197 | 32 | Plus |