Clone BO06294 Report

Search the DGRC for BO06294

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:94
Vector:pDNR-Dual
Associated Gene/TranscriptCG9363-RA
Protein status:BO06294.pep: validated full length
Sequenced Size:715

Clone Sequence Records

BO06294.3prime Sequence

713 bp (712 high quality bases) assembled on 2005-12-03

> BO06294.3prime
ATGGTCTAGAAAGCTTGCTTTGTTGGGCAGCTCCGGCGGACAGTCCGGTT
GATTGGAGGGATGGGCCGCCCGGAATGCCGGATTGCTCTCCAGTTCGCGA
TCGATGCGCAGAATTATGGGATACGGTCGCAAGTCGACGTGGAATCTTCG
GGCATTGAACACCTGAGGTACGAGGCAGCAGTCCGCCATGGAGATCTCAT
CGCCCACGCAATATTTGCCGGCCGAAGTGGACAGCGCCTTCTCAACCGCC
CGGAAGCCTCGTGTAATCCAGTGCTGGGCCCACTCCTTCTTCTTCTCCTC
GCCCACATGGATGAGCACGATGAGGTTCTGCAGGGGCTGGATGCCAGAGC
AAATGATCTCGACTATTTCGCGCACCTTGGCCCGCTTGTGGACGTCCTGT
GGCAGGAGTGGTCGCTGGGGACGTGTTTCCTCCAGGTAGTGCATTATGGC
TACCGATTCGATGAGGGTGTGTCCATCAATCTGTAGGGCGGGCACCTGCT
CCATTGGATTCACCTCGCGGTACTCATTGCAGTGCTGCTCGCCACCGGAT
TTGATCAGGCTGATCGGCTTGATGTCGTAGGGTATCTCCTTCAGGTTCAT
CGCAATGCGCACGCGCCAGGAGCACGAGCTGCGCCAATACGAGTAGAGTA
TTGGCTGTATGTCGGAGGAGGAAGCATTGGGACAGAGATTAGTAGACATG
TCGACTGATAACT

BO06294.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:43
Subject Length Description Subject Range Query Range Score Percent Strand
CG9363-PA 684 CG9363-RA 1..681 699..19 3405 100 Minus
CG9363-PB 663 CG9363-RB 23..660 656..19 3190 100 Minus
CG9363-PC 648 CG9363-RC 10..645 654..19 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ2-RA 1062 CG9363-RA 30..710 699..19 3405 100 Minus
GstZ2-RB 2202 CG9363-RB 381..1018 656..19 3190 100 Minus
GstZ2-RC 1093 CG9363-RC 50..685 654..19 3180 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:59
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9458203..9458534 146..477 1660 100 Plus
3R 32079331 3R 9458595..9458817 477..699 1115 100 Plus
3R 32079331 3R 9457999..9458127 19..147 645 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:04:03 has no hits.

BO06294.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:35 Download gff for BO06294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9363-PA 1..684 18..699 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:49 Download gff for BO06294.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9363-PA 1..684 18..699 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:44 Download gff for BO06294.3prime
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 25..710 19..705 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:30 Download gff for BO06294.3prime
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 25..710 19..705 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:30 Download gff for BO06294.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 9457999..9458125 19..145 100 <- Plus
3R 9458203..9458533 146..476 100 <- Plus
3R 9458595..9458822 477..705 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:44 Download gff for BO06294.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5283721..5283847 19..145 100 <- Plus
arm_3R 5283925..5284255 146..476 100 <- Plus
arm_3R 5284317..5284544 477..705 98   Plus

BO06294.5prime Sequence

713 bp (712 high quality bases) assembled on 2005-12-03

> BO06294.5prime
GAAGTTATCAGTCGACATGTCTACTAATCTCTGTCCCAATGCTTCCTCCT
CCGACATACAGCCAATACTCTACTCGTATTGGCGCAGCTCGTGCTCCTGG
CGCGTGCGCATTGCGATGAACCTGAAGGAGATACCCTACGACATCAAGCC
GATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAATGAGTACCGCG
AGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACACC
CTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCA
GCGACCACTCCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAA
TAGTCGAGATCATTTGCTCTGGCATCCAGCCCCTGCAGAACCTCATCGTG
CTCATCCATGTGGGCGAGGAGAAGAAGAAGGAGTGGGCCCAGCACTGGAT
TACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCACTTCGGCCGGCA
AATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACCT
CAGGTGTTCAATGCCCGAAGATTCCACGTCGACTTGCGACCGTATCCCAT
AATTCTGCGCATCGATCGCGAACTGGAGAGCAATCCGGCATTCCGGGCGG
CCCATCCCTCCAATCAACCGGACTGTCCGCCGGAGCTGCCCAACAAAGCA
AGCTTTCTAGACC

BO06294.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG9363-PA 684 CG9363-RA 1..681 17..697 3405 100 Plus
CG9363-PB 663 CG9363-RB 23..660 60..697 3190 100 Plus
CG9363-PC 648 CG9363-RC 10..645 62..697 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:33:06
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ2-RA 1062 CG9363-RA 30..710 17..697 3405 100 Plus
GstZ2-RB 2202 CG9363-RB 381..1018 60..697 3190 100 Plus
GstZ2-RC 1093 CG9363-RC 50..685 62..697 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:32:57
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9458203..9458534 570..239 1660 100 Minus
3R 32079331 3R 9458595..9458817 239..17 1115 100 Minus
3R 32079331 3R 9457999..9458127 697..569 645 100 Minus
Blast to na_te.dros performed on 2015-02-10 15:33:02 has no hits.

BO06294.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:36 Download gff for BO06294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9363-PA 1..684 17..698 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:51 Download gff for BO06294.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9363-PA 1..684 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:59:33 Download gff for BO06294.5prime
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 25..710 11..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:00 Download gff for BO06294.5prime
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 25..710 11..697 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:00 Download gff for BO06294.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 9458203..9458533 240..570 100 <- Minus
3R 9458595..9458822 11..239 98   Minus
3R 9457999..9458125 571..697 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:59:33 Download gff for BO06294.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5283721..5283847 571..697 100 <- Minus
arm_3R 5283925..5284255 240..570 100 <- Minus
arm_3R 5284317..5284544 11..239 98   Minus

BO06294.complete Sequence

715 bp (715 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630333

> BO06294.complete
GAAGTTATCAGTCGACATGTCTACTAATCTCTGTCCCAATGCTTCCTCCT
CCGACATACAGCCAATACTCTACTCGTATTGGCGCAGCTCGTGCTCCTGG
CGCGTGCGCATTGCGATGAACCTGAAGGAGATACCCTACGACATCAAGCC
GATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAATGAGTACCGCG
AGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACACC
CTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCA
GCGACCACTCCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAA
TAGTCGAGATCATTTGCTCTGGCATCCAGCCCCTGCAGAACCTCATCGTG
CTCATCCATGTGGGCGAGGAGAAGAAGAAGGAGTGGGCCCAGCACTGGAT
TACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCACTTCGGCCGGCA
AATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACCT
CAGGTGTTCAATGCCCGAAGATTCCACGTCGACTTGCGACCGTATCCCAT
AATTCTGCGCATCGATCGCGAACTGGAGAGCAATCCGGCATTCCGGGCGG
CCCATCCCTCCAATCAACCGGACTGTCCGCCGGAGCTGCCCAACAAAGCA
AGCTTTCTAGACCAT

BO06294.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ2-RA 684 CG9363-PA 1..681 17..697 3405 100 Plus
GstZ2-RB 663 CG9363-PB 23..660 60..697 3190 100 Plus
GstZ2-RC 648 CG9363-PC 10..645 62..697 3180 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:35
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ2-RA 1062 CG9363-RA 30..710 17..697 3405 100 Plus
GstZ2-RB 2202 CG9363-RB 381..1018 60..697 3190 100 Plus
GstZ2-RC 1093 CG9363-RC 50..685 62..697 3180 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:31
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 9458203..9458534 570..239 1660 100 Minus
3R 32079331 3R 9458595..9458817 239..17 1115 100 Minus
3R 32079331 3R 9457999..9458127 697..569 645 100 Minus
Blast to na_te.dros performed on 2014-11-27 19:58:32 has no hits.

BO06294.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:19 Download gff for BO06294.complete
Subject Subject Range Query Range Percent Splice Strand
CG9363-RA 1..684 17..698 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:32 Download gff for BO06294.complete
Subject Subject Range Query Range Percent Splice Strand
CG9363-RA 22..707 11..697 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:34 Download gff for BO06294.complete
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 30..710 17..699 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:19 Download gff for BO06294.complete
Subject Subject Range Query Range Percent Splice Strand
CG9363-RA 22..707 11..697 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:50 Download gff for BO06294.complete
Subject Subject Range Query Range Percent Splice Strand
GstZ2-RA 30..710 17..699 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:50 Download gff for BO06294.complete
Subject Subject Range Query Range Percent Splice Strand
3R 9458203..9458533 240..570 100 <- Minus
3R 9458595..9458817 17..239 100   Minus
3R 9457997..9458125 571..699 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:34 Download gff for BO06294.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 5283719..5283847 571..699 98 <- Minus
arm_3R 5283925..5284255 240..570 100 <- Minus
arm_3R 5284317..5284539 17..239 100   Minus

BO06294.pep Sequence

Translation from 16 to 715

> BO06294.pep
MSTNLCPNASSSDIQPILYSYWRSSCSWRVRIAMNLKEIPYDIKPISLIK
SGGEQHCNEYREVNPMEQVPALQIDGHTLIESVAIMHYLEETRPQRPLLP
QDVHKRAKVREIVEIICSGIQPLQNLIVLIHVGEEKKKEWAQHWITRGFR
AVEKALSTSAGKYCVGDEISMADCCLVPQVFNARRFHVDLRPYPIILRID
RELESNPAFRAAHPSNQPDCPPELPNKASFLDH

BO06294.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:55
Subject Length Description Subject Range Query Range Score Percent Strand
GstZ2-PA 227 CG9363-PA 1..227 1..227 1214 100 Plus
GstZ2-PB 220 CG9363-PB 4..220 11..227 1139 98.2 Plus
GstZ2-PC 215 CG9363-PC 4..215 16..227 1137 100 Plus
GstZ1-PA 246 CG9362-PA 33..246 15..227 790 66.8 Plus
gfzf-PD 234 CG33546-PD 3..181 18..196 147 25.5 Plus