Clone Sequence Records
BO06294.3prime Sequence
713 bp (712 high quality bases) assembled on 2005-12-03
> BO06294.3prime
ATGGTCTAGAAAGCTTGCTTTGTTGGGCAGCTCCGGCGGACAGTCCGGTT
GATTGGAGGGATGGGCCGCCCGGAATGCCGGATTGCTCTCCAGTTCGCGA
TCGATGCGCAGAATTATGGGATACGGTCGCAAGTCGACGTGGAATCTTCG
GGCATTGAACACCTGAGGTACGAGGCAGCAGTCCGCCATGGAGATCTCAT
CGCCCACGCAATATTTGCCGGCCGAAGTGGACAGCGCCTTCTCAACCGCC
CGGAAGCCTCGTGTAATCCAGTGCTGGGCCCACTCCTTCTTCTTCTCCTC
GCCCACATGGATGAGCACGATGAGGTTCTGCAGGGGCTGGATGCCAGAGC
AAATGATCTCGACTATTTCGCGCACCTTGGCCCGCTTGTGGACGTCCTGT
GGCAGGAGTGGTCGCTGGGGACGTGTTTCCTCCAGGTAGTGCATTATGGC
TACCGATTCGATGAGGGTGTGTCCATCAATCTGTAGGGCGGGCACCTGCT
CCATTGGATTCACCTCGCGGTACTCATTGCAGTGCTGCTCGCCACCGGAT
TTGATCAGGCTGATCGGCTTGATGTCGTAGGGTATCTCCTTCAGGTTCAT
CGCAATGCGCACGCGCCAGGAGCACGAGCTGCGCCAATACGAGTAGAGTA
TTGGCTGTATGTCGGAGGAGGAAGCATTGGGACAGAGATTAGTAGACATG
TCGACTGATAACT
BO06294.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9363-PA | 684 | CG9363-RA | 1..681 | 699..19 | 3405 | 100 | Minus |
CG9363-PB | 663 | CG9363-RB | 23..660 | 656..19 | 3190 | 100 | Minus |
CG9363-PC | 648 | CG9363-RC | 10..645 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ2-RA | 1062 | CG9363-RA | 30..710 | 699..19 | 3405 | 100 | Minus |
GstZ2-RB | 2202 | CG9363-RB | 381..1018 | 656..19 | 3190 | 100 | Minus |
GstZ2-RC | 1093 | CG9363-RC | 50..685 | 654..19 | 3180 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:03:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9458203..9458534 | 146..477 | 1660 | 100 | Plus |
3R | 32079331 | 3R | 9458595..9458817 | 477..699 | 1115 | 100 | Plus |
3R | 32079331 | 3R | 9457999..9458127 | 19..147 | 645 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:04:03 has no hits.
BO06294.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:35 Download gff for
BO06294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-PA | 1..684 | 18..699 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:49 Download gff for
BO06294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-PA | 1..684 | 18..699 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:44 Download gff for
BO06294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 25..710 | 19..705 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:53:30 Download gff for
BO06294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 25..710 | 19..705 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:53:30 Download gff for
BO06294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9457999..9458125 | 19..145 | 100 | <- | Plus |
3R | 9458203..9458533 | 146..476 | 100 | <- | Plus |
3R | 9458595..9458822 | 477..705 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:44 Download gff for
BO06294.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5283721..5283847 | 19..145 | 100 | <- | Plus |
arm_3R | 5283925..5284255 | 146..476 | 100 | <- | Plus |
arm_3R | 5284317..5284544 | 477..705 | 98 | | Plus |
BO06294.5prime Sequence
713 bp (712 high quality bases) assembled on 2005-12-03
> BO06294.5prime
GAAGTTATCAGTCGACATGTCTACTAATCTCTGTCCCAATGCTTCCTCCT
CCGACATACAGCCAATACTCTACTCGTATTGGCGCAGCTCGTGCTCCTGG
CGCGTGCGCATTGCGATGAACCTGAAGGAGATACCCTACGACATCAAGCC
GATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAATGAGTACCGCG
AGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACACC
CTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCA
GCGACCACTCCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAA
TAGTCGAGATCATTTGCTCTGGCATCCAGCCCCTGCAGAACCTCATCGTG
CTCATCCATGTGGGCGAGGAGAAGAAGAAGGAGTGGGCCCAGCACTGGAT
TACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCACTTCGGCCGGCA
AATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACCT
CAGGTGTTCAATGCCCGAAGATTCCACGTCGACTTGCGACCGTATCCCAT
AATTCTGCGCATCGATCGCGAACTGGAGAGCAATCCGGCATTCCGGGCGG
CCCATCCCTCCAATCAACCGGACTGTCCGCCGGAGCTGCCCAACAAAGCA
AGCTTTCTAGACC
BO06294.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9363-PA | 684 | CG9363-RA | 1..681 | 17..697 | 3405 | 100 | Plus |
CG9363-PB | 663 | CG9363-RB | 23..660 | 60..697 | 3190 | 100 | Plus |
CG9363-PC | 648 | CG9363-RC | 10..645 | 62..697 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:33:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ2-RA | 1062 | CG9363-RA | 30..710 | 17..697 | 3405 | 100 | Plus |
GstZ2-RB | 2202 | CG9363-RB | 381..1018 | 60..697 | 3190 | 100 | Plus |
GstZ2-RC | 1093 | CG9363-RC | 50..685 | 62..697 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:32:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9458203..9458534 | 570..239 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 9458595..9458817 | 239..17 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 9457999..9458127 | 697..569 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:33:02 has no hits.
BO06294.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:36 Download gff for
BO06294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-PA | 1..684 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:51 Download gff for
BO06294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-PA | 1..684 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:59:33 Download gff for
BO06294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 25..710 | 11..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:00 Download gff for
BO06294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 25..710 | 11..697 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:00 Download gff for
BO06294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9458203..9458533 | 240..570 | 100 | <- | Minus |
3R | 9458595..9458822 | 11..239 | 98 | | Minus |
3R | 9457999..9458125 | 571..697 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:59:33 Download gff for
BO06294.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5283721..5283847 | 571..697 | 100 | <- | Minus |
arm_3R | 5283925..5284255 | 240..570 | 100 | <- | Minus |
arm_3R | 5284317..5284544 | 11..239 | 98 | | Minus |
BO06294.complete Sequence
715 bp (715 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630333
> BO06294.complete
GAAGTTATCAGTCGACATGTCTACTAATCTCTGTCCCAATGCTTCCTCCT
CCGACATACAGCCAATACTCTACTCGTATTGGCGCAGCTCGTGCTCCTGG
CGCGTGCGCATTGCGATGAACCTGAAGGAGATACCCTACGACATCAAGCC
GATCAGCCTGATCAAATCCGGTGGCGAGCAGCACTGCAATGAGTACCGCG
AGGTGAATCCAATGGAGCAGGTGCCCGCCCTACAGATTGATGGACACACC
CTCATCGAATCGGTAGCCATAATGCACTACCTGGAGGAAACACGTCCCCA
GCGACCACTCCTGCCACAGGACGTCCACAAGCGGGCCAAGGTGCGCGAAA
TAGTCGAGATCATTTGCTCTGGCATCCAGCCCCTGCAGAACCTCATCGTG
CTCATCCATGTGGGCGAGGAGAAGAAGAAGGAGTGGGCCCAGCACTGGAT
TACACGAGGCTTCCGGGCGGTTGAGAAGGCGCTGTCCACTTCGGCCGGCA
AATATTGCGTGGGCGATGAGATCTCCATGGCGGACTGCTGCCTCGTACCT
CAGGTGTTCAATGCCCGAAGATTCCACGTCGACTTGCGACCGTATCCCAT
AATTCTGCGCATCGATCGCGAACTGGAGAGCAATCCGGCATTCCGGGCGG
CCCATCCCTCCAATCAACCGGACTGTCCGCCGGAGCTGCCCAACAAAGCA
AGCTTTCTAGACCAT
BO06294.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 19:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ2-RA | 684 | CG9363-PA | 1..681 | 17..697 | 3405 | 100 | Plus |
GstZ2-RB | 663 | CG9363-PB | 23..660 | 60..697 | 3190 | 100 | Plus |
GstZ2-RC | 648 | CG9363-PC | 10..645 | 62..697 | 3180 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 19:58:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ2-RA | 1062 | CG9363-RA | 30..710 | 17..697 | 3405 | 100 | Plus |
GstZ2-RB | 2202 | CG9363-RB | 381..1018 | 60..697 | 3190 | 100 | Plus |
GstZ2-RC | 1093 | CG9363-RC | 50..685 | 62..697 | 3180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 19:58:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 9458203..9458534 | 570..239 | 1660 | 100 | Minus |
3R | 32079331 | 3R | 9458595..9458817 | 239..17 | 1115 | 100 | Minus |
3R | 32079331 | 3R | 9457999..9458127 | 697..569 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 19:58:32 has no hits.
BO06294.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:19 Download gff for
BO06294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-RA | 1..684 | 17..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:32 Download gff for
BO06294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-RA | 22..707 | 11..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:34 Download gff for
BO06294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 30..710 | 17..699 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:19 Download gff for
BO06294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9363-RA | 22..707 | 11..697 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:11:50 Download gff for
BO06294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
GstZ2-RA | 30..710 | 17..699 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:11:50 Download gff for
BO06294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 9458203..9458533 | 240..570 | 100 | <- | Minus |
3R | 9458595..9458817 | 17..239 | 100 | | Minus |
3R | 9457997..9458125 | 571..699 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:34 Download gff for
BO06294.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 5283719..5283847 | 571..699 | 98 | <- | Minus |
arm_3R | 5283925..5284255 | 240..570 | 100 | <- | Minus |
arm_3R | 5284317..5284539 | 17..239 | 100 | | Minus |
BO06294.pep Sequence
Translation from 16 to 715
> BO06294.pep
MSTNLCPNASSSDIQPILYSYWRSSCSWRVRIAMNLKEIPYDIKPISLIK
SGGEQHCNEYREVNPMEQVPALQIDGHTLIESVAIMHYLEETRPQRPLLP
QDVHKRAKVREIVEIICSGIQPLQNLIVLIHVGEEKKKEWAQHWITRGFR
AVEKALSTSAGKYCVGDEISMADCCLVPQVFNARRFHVDLRPYPIILRID
RELESNPAFRAAHPSNQPDCPPELPNKASFLDH
BO06294.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
GstZ2-PA | 227 | CG9363-PA | 1..227 | 1..227 | 1214 | 100 | Plus |
GstZ2-PB | 220 | CG9363-PB | 4..220 | 11..227 | 1139 | 98.2 | Plus |
GstZ2-PC | 215 | CG9363-PC | 4..215 | 16..227 | 1137 | 100 | Plus |
GstZ1-PA | 246 | CG9362-PA | 33..246 | 15..227 | 790 | 66.8 | Plus |
gfzf-PD | 234 | CG33546-PD | 3..181 | 18..196 | 147 | 25.5 | Plus |