Clone BO06295 Report

Search the DGRC for BO06295

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:62
Well:95
Vector:pDNR-Dual
Associated Gene/TranscriptCG3397-RA
Protein status:BO06295.pep: validated full length
Sequenced Size:1060

Clone Sequence Records

BO06295.3prime Sequence

899 bp (803 high quality bases) assembled on 2005-12-03

> BO06295.3prime
ATGGTCTAGAAAGCTTGCTTTGAACATGTTAACCGTGGATAAAGTGGAGC
CCCAACTGTAGGACTTGGTAAAAACGTTTTCGCGCAGATACTGCAGCACT
TCCTGTTCGTGGGAAGTGAGACCGTCGAAGATCGCGTCCAAGTTAATCCG
CAGCAGCTTTCGGTTGGGGATACCGATGAGGAAGGTGGCCGCCCCATCCA
GTTGCATTGTATAGTACATGGCCAGCTTTCCAAGCTCAACGTTCCTCTTC
TGACAGATTTCGGCTCCCCGTTTGCCCACAGCTAGGAGTTCCGGACTACC
AGGATGCCAGGACTGGGGTCCAGCGTTGCTTAGGAGTCCCAGAGAGTGCG
CGGCCGCACAGACAACGCCCACGCCCATCTCCTGGAAGGCCTTCATGTGG
CGCAGCAAAGTGTTGTCCAACAGGGTGTAGCGGGCATAGTTGAGCACCAC
CTGGATGCGACCTTTGCCCCGCTCGGCACACTCCTTCAGCACGTCCACAT
CGTAGGCGGTGACTCCGATGAATCGAGCCTTTCCCGCCTGGACGTACTCC
TCGAGGACGGGTATGGTCTCATTCAGCACCATGTCCAGACTAGGTGCCGC
ATCCACGTCATGAACCTGTAGTACGTCCACCCTGTCCAACTGGAGCAGCT
CCAGACTACGCTTCACACTCTCCCGAGCCTTGGCAGCCGTATAGTCGAAC
ATATTGTTTGGATCCAACTCGTAACGTGCAACTTTAGTTGCTATATAATA
GGCCTCCCGGGGCACATCCTTGAGCGCCTGGCCAAGCAGCTCTTCCGATT
TGCCTTGGCCATAAAAGGGAGCCGTGTCTATGTAGTTGATACCGGATCTA
ATGGCTTCCTGCACCGTGAGGATGCCCTCCTCGCGATCGAAGTCATCGG

BO06295.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-PA 1029 CG3397-RA 146..1026 899..19 4405 100 Minus
CG12224-PA 885 CG12224-RA 242..641 716..317 1200 92 Minus
CG12224-PA 885 CG12224-RA 651..881 307..77 780 93.5 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:20:40
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-RA 1187 CG3397-RA 179..1059 899..19 4405 100 Minus
CG12224-RC 1628 CG12224-RC 670..1525 897..29 2955 89.4 Minus
CG12224-RB 1109 CG12224-RB 151..1006 897..29 2955 89.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:20:38
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11983486..11984028 77..619 2715 100 Plus
3R 32079331 3R 11981012..11981554 77..619 2070 92.1 Plus
3R 32079331 3R 11984078..11984363 614..899 1430 100 Plus
3R 32079331 3R 11981604..11981874 614..897 695 83.8 Plus
3R 32079331 3R 11983226..11983283 19..76 290 100 Plus
3R 32079331 3R 11980807..11980854 29..76 195 93.8 Plus
Blast to na_te.dros performed on 2015-02-12 16:20:39 has no hits.

BO06295.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:37 Download gff for BO06295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-PA 146..1029 16..899 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:52 Download gff for BO06295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-PA 146..1029 16..899 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:51 Download gff for BO06295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 179..1064 13..899 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:42 Download gff for BO06295.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 179..1064 13..899 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:42 Download gff for BO06295.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 11983221..11983283 13..76 95 <- Plus
3R 11984080..11984363 616..899 100   Plus
3R 11983486..11984024 77..615 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:51 Download gff for BO06295.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7808943..7809005 13..76 95 <- Plus
arm_3R 7809208..7809746 77..615 100 <- Plus
arm_3R 7809802..7810085 616..899 100   Plus

BO06295.5prime Sequence

923 bp (784 high quality bases) assembled on 2005-12-03

> BO06295.5prime
GAAGTTATCAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGG
GTTTCCACGATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGA
TCCACGGGTCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTC
CAAGCTCTTCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGC
AGGAAGCCATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTAT
GGCCAAGGCAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCC
CCGGGAGGCCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATC
CAAACAATATGTTCGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAG
CGTAGTCTGGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCA
TGACGTGGATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATAC
CCGTCCTCGAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTC
ACCGCCTACGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGG
TCGCATCCAGGTGGTGCTCAACTATGCCCGCTACACCCTGTTGGACAACA
CTTTGCTGCGCCACATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTC
TGTGCGGCCGCGCACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTC
CTGGCATCCTGGTAGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCG
AAATCTGTCAGAAGAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTAT
ACAATGCAACTGGATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCG
AAAGCTGCTGCGGATTAACTTGG

BO06295.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:45
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-PA 1029 CG3397-RA 1..907 17..923 4535 100 Plus
CG12224-PA 885 CG12224-RA 242..641 345..744 1200 92 Plus
CG12224-PA 885 CG12224-RA 651..816 754..919 505 92.1 Plus
CG12224-PA 885 CG12224-RA 1..97 17..113 485 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:33:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-RA 1187 CG3397-RA 34..940 17..923 4535 100 Plus
CG12224-RC 1628 CG12224-RC 523..1416 17..923 2950 88.4 Plus
CG12224-RB 1109 CG12224-RB 4..897 17..923 2950 88.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:33:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11983547..11984028 923..442 2410 100 Minus
3R 32079331 3R 11984078..11984508 447..17 2155 100 Minus
3R 32079331 3R 11981073..11981554 923..442 1780 91.3 Minus
3R 32079331 3R 11981604..11982021 447..17 1175 85.4 Minus
Blast to na_te.dros performed on 2015-02-10 15:33:53 has no hits.

BO06295.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:38 Download gff for BO06295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-PA 1..907 17..923 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:54 Download gff for BO06295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-PA 1..907 17..923 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:59:36 Download gff for BO06295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..940 10..923 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:06 Download gff for BO06295.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..940 10..923 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:06 Download gff for BO06295.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 11983547..11984024 446..923 100 <- Minus
3R 11984080..11984511 10..445 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:59:36 Download gff for BO06295.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7809269..7809746 446..923 100 <- Minus
arm_3R 7809802..7810233 10..445 99   Minus

BO06295.complete Sequence

1060 bp (1060 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630334

> BO06295.complete
GAAGTTATCAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGG
GTTTCCACGATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGA
TCCACGGGTCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTC
CAAGCTCTTCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGC
AGGAAGCCATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTAT
GGCCAAGGCAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCC
CCGGGAGGCCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATC
CAAACAATATGTTCGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAG
CGTAGTCTGGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCA
TGACGTGGATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATAC
CCGTCCTCGAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTC
ACCGCCTACGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGG
TCGCATCCAGGTGGTGCTCAACTATGCCCGCTACACCCTGTTGGACAACA
CTTTGCTGCGCCACATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTC
TGTGCGGCCGCGCACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTC
CTGGCATCCTGGTAGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCG
AAATCTGTCAGAAGAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTAT
ACAATGCAACTGGATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCG
AAAGCTGCTGCGGATTAACTTGGACGCGATCTTCGACGGTCTCACTTCCC
ACGAACAGGAAGTGCTGCAGTATCTGCGCGAAAACGTTTTTACCAAGTCC
TACAGTTGGGGCTCCACTTTATCCACGGTTAACATGTTCAAAGCAAGCTT
TCTAGACCAT

BO06295.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:47
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-RA 1029 CG3397-PA 1..1026 17..1042 5130 100 Plus
CG12224-RC 687 CG12224-PC 1..674 359..1032 2575 92.1 Plus
CG12224-RB 687 CG12224-PB 1..674 359..1032 2575 92.1 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-RA 1187 CG3397-RA 34..1059 17..1042 5130 100 Plus
CG12224-RC 1628 CG12224-RC 523..1525 17..1032 3410 89.3 Plus
CG12224-RB 1109 CG12224-RB 4..1006 17..1032 3410 89.3 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:45
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 11983486..11984028 984..442 2715 100 Minus
3R 32079331 3R 11984078..11984508 447..17 2155 100 Minus
3R 32079331 3R 11981012..11981554 984..442 2070 92.1 Minus
3R 32079331 3R 11981604..11982021 447..17 1175 85.4 Minus
3R 32079331 3R 11983226..11983283 1042..985 290 100 Minus
3R 32079331 3R 11980807..11980854 1032..985 195 93.8 Minus
Blast to na_te.dros performed on 2014-11-27 13:54:47 has no hits.

BO06295.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:56 Download gff for BO06295.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 1..1029 17..1045 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:23 Download gff for BO06295.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..1064 10..1048 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:23 Download gff for BO06295.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 34..1059 17..1044 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:57 Download gff for BO06295.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 31..1064 10..1048 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:55 Download gff for BO06295.complete
Subject Subject Range Query Range Percent Splice Strand
CG3397-RA 34..1059 17..1044 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:55 Download gff for BO06295.complete
Subject Subject Range Query Range Percent Splice Strand
3R 11983223..11983283 985..1044 96 <- Minus
3R 11983486..11984024 446..984 100 <- Minus
3R 11984080..11984508 17..445 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:23 Download gff for BO06295.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 7808945..7809005 985..1044 96 <- Minus
arm_3R 7809208..7809746 446..984 100 <- Minus
arm_3R 7809802..7810230 17..445 100   Minus

BO06295.pep Sequence

Translation from 16 to 1060

> BO06295.pep
MSGSLPATFVKGFHDEEKVRRMEYRQLGSTGLRVSKIALGGATLSKLFSD
DFDREEGILTVQEAIRSGINYIDTAPFYGQGKSEELLGQALKDVPREAYY
IATKVARYELDPNNMFDYTAAKARESVKRSLELLQLDRVDVLQVHDVDAA
PSLDMVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAERGKGRIQVV
LNYARYTLLDNTLLRHMKAFQEMGVGVVCAAAHSLGLLSNAGPQSWHPGS
PELLAVGKRGAEICQKRNVELGKLAMYYTMQLDGAATFLIGIPNRKLLRI
NLDAIFDGLTSHEQEVLQYLRENVFTKSYSWGSTLSTVNMFKASFLDH

BO06295.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG3397-PA 342 CG3397-PA 1..342 1..342 1740 100 Plus
CG18547-PA 345 CG18547-PA 1..330 1..331 1083 63.3 Plus
CG12224-PC 228 CG12224-PC 1..228 115..342 1055 90.8 Plus
CG12224-PB 228 CG12224-PB 1..228 115..342 1055 90.8 Plus