Clone Sequence Records
BO06295.3prime Sequence
899 bp (803 high quality bases) assembled on 2005-12-03
> BO06295.3prime
ATGGTCTAGAAAGCTTGCTTTGAACATGTTAACCGTGGATAAAGTGGAGC
CCCAACTGTAGGACTTGGTAAAAACGTTTTCGCGCAGATACTGCAGCACT
TCCTGTTCGTGGGAAGTGAGACCGTCGAAGATCGCGTCCAAGTTAATCCG
CAGCAGCTTTCGGTTGGGGATACCGATGAGGAAGGTGGCCGCCCCATCCA
GTTGCATTGTATAGTACATGGCCAGCTTTCCAAGCTCAACGTTCCTCTTC
TGACAGATTTCGGCTCCCCGTTTGCCCACAGCTAGGAGTTCCGGACTACC
AGGATGCCAGGACTGGGGTCCAGCGTTGCTTAGGAGTCCCAGAGAGTGCG
CGGCCGCACAGACAACGCCCACGCCCATCTCCTGGAAGGCCTTCATGTGG
CGCAGCAAAGTGTTGTCCAACAGGGTGTAGCGGGCATAGTTGAGCACCAC
CTGGATGCGACCTTTGCCCCGCTCGGCACACTCCTTCAGCACGTCCACAT
CGTAGGCGGTGACTCCGATGAATCGAGCCTTTCCCGCCTGGACGTACTCC
TCGAGGACGGGTATGGTCTCATTCAGCACCATGTCCAGACTAGGTGCCGC
ATCCACGTCATGAACCTGTAGTACGTCCACCCTGTCCAACTGGAGCAGCT
CCAGACTACGCTTCACACTCTCCCGAGCCTTGGCAGCCGTATAGTCGAAC
ATATTGTTTGGATCCAACTCGTAACGTGCAACTTTAGTTGCTATATAATA
GGCCTCCCGGGGCACATCCTTGAGCGCCTGGCCAAGCAGCTCTTCCGATT
TGCCTTGGCCATAAAAGGGAGCCGTGTCTATGTAGTTGATACCGGATCTA
ATGGCTTCCTGCACCGTGAGGATGCCCTCCTCGCGATCGAAGTCATCGG
BO06295.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-PA | 1029 | CG3397-RA | 146..1026 | 899..19 | 4405 | 100 | Minus |
CG12224-PA | 885 | CG12224-RA | 242..641 | 716..317 | 1200 | 92 | Minus |
CG12224-PA | 885 | CG12224-RA | 651..881 | 307..77 | 780 | 93.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:20:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-RA | 1187 | CG3397-RA | 179..1059 | 899..19 | 4405 | 100 | Minus |
CG12224-RC | 1628 | CG12224-RC | 670..1525 | 897..29 | 2955 | 89.4 | Minus |
CG12224-RB | 1109 | CG12224-RB | 151..1006 | 897..29 | 2955 | 89.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:20:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11983486..11984028 | 77..619 | 2715 | 100 | Plus |
3R | 32079331 | 3R | 11981012..11981554 | 77..619 | 2070 | 92.1 | Plus |
3R | 32079331 | 3R | 11984078..11984363 | 614..899 | 1430 | 100 | Plus |
3R | 32079331 | 3R | 11981604..11981874 | 614..897 | 695 | 83.8 | Plus |
3R | 32079331 | 3R | 11983226..11983283 | 19..76 | 290 | 100 | Plus |
3R | 32079331 | 3R | 11980807..11980854 | 29..76 | 195 | 93.8 | Plus |
Blast to na_te.dros performed on 2015-02-12 16:20:39 has no hits.
BO06295.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:37 Download gff for
BO06295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-PA | 146..1029 | 16..899 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:52 Download gff for
BO06295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-PA | 146..1029 | 16..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:51 Download gff for
BO06295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 179..1064 | 13..899 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:39:42 Download gff for
BO06295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 179..1064 | 13..899 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:39:42 Download gff for
BO06295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11983221..11983283 | 13..76 | 95 | <- | Plus |
3R | 11984080..11984363 | 616..899 | 100 | | Plus |
3R | 11983486..11984024 | 77..615 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:51 Download gff for
BO06295.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7808943..7809005 | 13..76 | 95 | <- | Plus |
arm_3R | 7809208..7809746 | 77..615 | 100 | <- | Plus |
arm_3R | 7809802..7810085 | 616..899 | 100 | | Plus |
BO06295.5prime Sequence
923 bp (784 high quality bases) assembled on 2005-12-03
> BO06295.5prime
GAAGTTATCAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGG
GTTTCCACGATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGA
TCCACGGGTCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTC
CAAGCTCTTCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGC
AGGAAGCCATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTAT
GGCCAAGGCAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCC
CCGGGAGGCCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATC
CAAACAATATGTTCGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAG
CGTAGTCTGGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCA
TGACGTGGATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATAC
CCGTCCTCGAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTC
ACCGCCTACGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGG
TCGCATCCAGGTGGTGCTCAACTATGCCCGCTACACCCTGTTGGACAACA
CTTTGCTGCGCCACATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTC
TGTGCGGCCGCGCACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTC
CTGGCATCCTGGTAGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCG
AAATCTGTCAGAAGAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTAT
ACAATGCAACTGGATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCG
AAAGCTGCTGCGGATTAACTTGG
BO06295.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-PA | 1029 | CG3397-RA | 1..907 | 17..923 | 4535 | 100 | Plus |
CG12224-PA | 885 | CG12224-RA | 242..641 | 345..744 | 1200 | 92 | Plus |
CG12224-PA | 885 | CG12224-RA | 651..816 | 754..919 | 505 | 92.1 | Plus |
CG12224-PA | 885 | CG12224-RA | 1..97 | 17..113 | 485 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:33:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-RA | 1187 | CG3397-RA | 34..940 | 17..923 | 4535 | 100 | Plus |
CG12224-RC | 1628 | CG12224-RC | 523..1416 | 17..923 | 2950 | 88.4 | Plus |
CG12224-RB | 1109 | CG12224-RB | 4..897 | 17..923 | 2950 | 88.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:33:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11983547..11984028 | 923..442 | 2410 | 100 | Minus |
3R | 32079331 | 3R | 11984078..11984508 | 447..17 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 11981073..11981554 | 923..442 | 1780 | 91.3 | Minus |
3R | 32079331 | 3R | 11981604..11982021 | 447..17 | 1175 | 85.4 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:33:53 has no hits.
BO06295.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:38 Download gff for
BO06295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-PA | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:54 Download gff for
BO06295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-PA | 1..907 | 17..923 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:59:36 Download gff for
BO06295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 31..940 | 10..923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:06 Download gff for
BO06295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 31..940 | 10..923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:06 Download gff for
BO06295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11983547..11984024 | 446..923 | 100 | <- | Minus |
3R | 11984080..11984511 | 10..445 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:59:36 Download gff for
BO06295.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7809269..7809746 | 446..923 | 100 | <- | Minus |
arm_3R | 7809802..7810233 | 10..445 | 99 | | Minus |
BO06295.complete Sequence
1060 bp (1060 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630334
> BO06295.complete
GAAGTTATCAGTCGACATGTCGGGATCACTGCCAGCTACTTTCGTCAAGG
GTTTCCACGATGAGGAGAAGGTGCGTCGTATGGAGTACCGCCAACTCGGA
TCCACGGGTCTGCGAGTATCCAAAATTGCTTTGGGTGGTGCCACTCTCTC
CAAGCTCTTCTCCGATGACTTCGATCGCGAGGAGGGCATCCTCACGGTGC
AGGAAGCCATTAGATCCGGTATCAACTACATAGACACGGCTCCCTTTTAT
GGCCAAGGCAAATCGGAAGAGCTGCTTGGCCAGGCGCTCAAGGATGTGCC
CCGGGAGGCCTATTATATAGCAACTAAAGTTGCACGTTACGAGTTGGATC
CAAACAATATGTTCGACTATACGGCTGCCAAGGCTCGGGAGAGTGTGAAG
CGTAGTCTGGAGCTGCTCCAGTTGGACAGGGTGGACGTACTACAGGTTCA
TGACGTGGATGCGGCACCTAGTCTGGACATGGTGCTGAATGAGACCATAC
CCGTCCTCGAGGAGTACGTCCAGGCGGGAAAGGCTCGATTCATCGGAGTC
ACCGCCTACGATGTGGACGTGCTGAAGGAGTGTGCCGAGCGGGGCAAAGG
TCGCATCCAGGTGGTGCTCAACTATGCCCGCTACACCCTGTTGGACAACA
CTTTGCTGCGCCACATGAAGGCCTTCCAGGAGATGGGCGTGGGCGTTGTC
TGTGCGGCCGCGCACTCTCTGGGACTCCTAAGCAACGCTGGACCCCAGTC
CTGGCATCCTGGTAGTCCGGAACTCCTAGCTGTGGGCAAACGGGGAGCCG
AAATCTGTCAGAAGAGGAACGTTGAGCTTGGAAAGCTGGCCATGTACTAT
ACAATGCAACTGGATGGGGCGGCCACCTTCCTCATCGGTATCCCCAACCG
AAAGCTGCTGCGGATTAACTTGGACGCGATCTTCGACGGTCTCACTTCCC
ACGAACAGGAAGTGCTGCAGTATCTGCGCGAAAACGTTTTTACCAAGTCC
TACAGTTGGGGCTCCACTTTATCCACGGTTAACATGTTCAAAGCAAGCTT
TCTAGACCAT
BO06295.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:54:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-RA | 1029 | CG3397-PA | 1..1026 | 17..1042 | 5130 | 100 | Plus |
CG12224-RC | 687 | CG12224-PC | 1..674 | 359..1032 | 2575 | 92.1 | Plus |
CG12224-RB | 687 | CG12224-PB | 1..674 | 359..1032 | 2575 | 92.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:54:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-RA | 1187 | CG3397-RA | 34..1059 | 17..1042 | 5130 | 100 | Plus |
CG12224-RC | 1628 | CG12224-RC | 523..1525 | 17..1032 | 3410 | 89.3 | Plus |
CG12224-RB | 1109 | CG12224-RB | 4..1006 | 17..1032 | 3410 | 89.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:54:45
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 11983486..11984028 | 984..442 | 2715 | 100 | Minus |
3R | 32079331 | 3R | 11984078..11984508 | 447..17 | 2155 | 100 | Minus |
3R | 32079331 | 3R | 11981012..11981554 | 984..442 | 2070 | 92.1 | Minus |
3R | 32079331 | 3R | 11981604..11982021 | 447..17 | 1175 | 85.4 | Minus |
3R | 32079331 | 3R | 11983226..11983283 | 1042..985 | 290 | 100 | Minus |
3R | 32079331 | 3R | 11980807..11980854 | 1032..985 | 195 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:54:47 has no hits.
BO06295.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:56 Download gff for
BO06295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 1..1029 | 17..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:23 Download gff for
BO06295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 31..1064 | 10..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:28:23 Download gff for
BO06295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 34..1059 | 17..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:57 Download gff for
BO06295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 31..1064 | 10..1048 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:58:55 Download gff for
BO06295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3397-RA | 34..1059 | 17..1044 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:58:55 Download gff for
BO06295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 11983223..11983283 | 985..1044 | 96 | <- | Minus |
3R | 11983486..11984024 | 446..984 | 100 | <- | Minus |
3R | 11984080..11984508 | 17..445 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:28:23 Download gff for
BO06295.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 7808945..7809005 | 985..1044 | 96 | <- | Minus |
arm_3R | 7809208..7809746 | 446..984 | 100 | <- | Minus |
arm_3R | 7809802..7810230 | 17..445 | 100 | | Minus |
BO06295.pep Sequence
Translation from 16 to 1060
> BO06295.pep
MSGSLPATFVKGFHDEEKVRRMEYRQLGSTGLRVSKIALGGATLSKLFSD
DFDREEGILTVQEAIRSGINYIDTAPFYGQGKSEELLGQALKDVPREAYY
IATKVARYELDPNNMFDYTAAKARESVKRSLELLQLDRVDVLQVHDVDAA
PSLDMVLNETIPVLEEYVQAGKARFIGVTAYDVDVLKECAERGKGRIQVV
LNYARYTLLDNTLLRHMKAFQEMGVGVVCAAAHSLGLLSNAGPQSWHPGS
PELLAVGKRGAEICQKRNVELGKLAMYYTMQLDGAATFLIGIPNRKLLRI
NLDAIFDGLTSHEQEVLQYLRENVFTKSYSWGSTLSTVNMFKASFLDH
BO06295.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3397-PA | 342 | CG3397-PA | 1..342 | 1..342 | 1740 | 100 | Plus |
CG18547-PA | 345 | CG18547-PA | 1..330 | 1..331 | 1083 | 63.3 | Plus |
CG12224-PC | 228 | CG12224-PC | 1..228 | 115..342 | 1055 | 90.8 | Plus |
CG12224-PB | 228 | CG12224-PB | 1..228 | 115..342 | 1055 | 90.8 | Plus |