Clone BO06302 Report

Search the DGRC for BO06302

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:2
Vector:pDNR-Dual
Associated Gene/TranscriptDer-1-RA
Protein status:BO06302.pep: validated full length
Sequenced Size:769

Clone Sequence Records

BO06302.5prime Sequence

767 bp (766 high quality bases) assembled on 2005-12-03

> BO06302.5prime
GAAGTTATCAGTCGACATGGACGCTGGCGTGTGGTACCGCTCGCTGCCCC
GCTTCACCCGCTACTGGCTGACGGCCACCGTGGTGTTGAGCATGCTCTGC
CGCTTCGATGTGATACCCCTTCATTGGCTGCATCTGGACCGATCGGCCGT
TTTCAGCAAGCTGCAGCTCTGGCGCTGCATGACGTCACTGTTCGTCTTTC
CCATCTCGTCGAACACGGCCTTCCACTTCCTCATCAACTGCTTCTTCATC
GTTCAGTACAGCTCCAAACTGGAGAAGGATCAGTACAGCCGAAGTCCGGC
TGATTACCTGTACCTGTTGATCGTGTCGGCGGTGCTGGCCAACATCGGGG
GCATGATCTTCAACGTGTACTTCCTCATGGACACGCTGGTGCTGGCCATC
ACGTATATCTGGTGCCAGCTGAACAAGGACGTCACCGTGAGCTTCTGGTT
CGGCACCAGGTTCAAGGCCATGTACCTTCCCTGGGTGCTGGCCGCCTTCG
AGTTTATTTTCCACTTCTCGCTCGCCTCGCTGGTGGGCATATTCGTGGGA
CATGTGTACTACTTCTTCAAGTTCCAATACTCGCAGGATTTGGGCGGCAC
ACCCCTGTTGGAAACGCCGCAGTTCTTGAAGCGCCTGGTGCCAGATGTTT
CCGGCGGATTCGGCGGCTTCGGACTCCCACCGGAGAGCAGAGCACCACCT
AGGCAGGCGACCGAAAGTCCCTGGGGCCGGGGCATGACCTTGGGTCGCAA
CGCAAGCTTTCTAGACC

BO06302.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG10908-PA 738 CG10908-RA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:19
Subject Length Description Subject Range Query Range Score Percent Strand
Der-1-RB 1243 CG10908-RB 280..1014 17..751 3675 100 Plus
Der-1-RA 1088 CG10908-RA 125..859 17..751 3675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:14
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1974561..1974818 259..516 1290 100 Plus
2L 23513712 2L 1974236..1974480 17..261 1225 100 Plus
2L 23513712 2L 1975061..1975184 628..751 620 100 Plus
2L 23513712 2L 1974881..1974992 517..628 560 100 Plus
Blast to na_te.dros performed on 2015-02-13 01:05:17 has no hits.

BO06302.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:44 Download gff for BO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10908-PA 1..738 17..754 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:00 Download gff for BO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
CG10908-PA 1..738 17..754 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:15:46 Download gff for BO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 119..865 9..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:25 Download gff for BO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 119..865 9..758 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:25 Download gff for BO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 1974230..1974480 9..261 98 -> Plus
2L 1974564..1974818 262..516 100 -> Plus
2L 1974881..1974991 517..627 100 -> Plus
2L 1975061..1975190 628..758 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:15:46 Download gff for BO06302.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1974230..1974480 9..261 98 -> Plus
arm_2L 1974564..1974818 262..516 100 -> Plus
arm_2L 1974881..1974991 517..627 100 -> Plus
arm_2L 1975061..1975190 628..758 97   Plus

BO06302.3prime Sequence

767 bp (766 high quality bases) assembled on 2005-12-03

> BO06302.3prime
ATGGTCTAGAAAGCTTGCGTTGCGACCCAAGGTCATGCCCCGGCCCCAGG
GACTTTCGGTCGCCTGCCTAGGTGGTGCTCTGCTCTCCGGTGGGAGTCCG
AAGCCGCCGAATCCGCCGGAAACATCTGGCACCAGGCGCTTCAAGAACTG
CGGCGTTTCCAACAGGGGTGTGCCGCCCAAATCCTGCGAGTATTGGAACT
TGAAGAAGTAGTACACATGTCCCACGAATATGCCCACCAGCGAGGCGAGC
GAGAAGTGGAAAATAAACTCGAAGGCGGCCAGCACCCAGGGAAGGTACAT
GGCCTTGAACCTGGTGCCGAACCAGAAGCTCACGGTGACGTCCTTGTTCA
GCTGGCACCAGATATACGTGATGGCCAGCACCAGCGTGTCCATGAGGAAG
TACACGTTGAAGATCATGCCCCCGATGTTGGCCAGCACCGCCGACACGAT
CAACAGGTACAGGTAATCAGCCGGACTTCGGCTGTACTGATCCTTCTCCA
GTTTGGAGCTGTACTGAACGATGAAGAAGCAGTTGATGAGGAAGTGGAAG
GCCGTGTTCGACGAGATGGGAAAGACGAACAGTGACGTCATGCAGCGCCA
GAGCTGCAGCTTGCTGAAAACGGCCGATCGGTCCAGATGCAGCCAATGAA
GGGGTATCACATCGAAGCGGCAGAGCATGCTCAACACCACGGTGGCCGTC
AGCCAGTAGCGGGTGAAGCGGGGCAGCGAGCGGTACCACACGCCAGCGTC
CATGTCGACTGATAACT

BO06302.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG10908-PA 738 CG10908-RA 1..735 753..19 3675 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:01
Subject Length Description Subject Range Query Range Score Percent Strand
Der-1-RB 1243 CG10908-RB 280..1014 753..19 3675 100 Minus
Der-1-RA 1088 CG10908-RA 125..859 753..19 3675 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1974561..1974818 511..254 1290 100 Minus
2L 23513712 2L 1974236..1974480 753..509 1225 100 Minus
2L 23513712 2L 1975061..1975184 142..19 620 100 Minus
2L 23513712 2L 1974881..1974992 253..142 560 100 Minus
Blast to na_te.dros performed on 2015-02-12 01:28:59 has no hits.

BO06302.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:43 Download gff for BO06302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10908-PA 1..738 16..753 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:59 Download gff for BO06302.3prime
Subject Subject Range Query Range Percent Splice Strand
CG10908-PA 1..738 16..753 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:35 Download gff for BO06302.3prime
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 119..865 12..761 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:13 Download gff for BO06302.3prime
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 119..865 12..761 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:13 Download gff for BO06302.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 1974230..1974480 509..761 98 -> Minus
2L 1974564..1974818 254..508 100 -> Minus
2L 1974881..1974991 143..253 100 -> Minus
2L 1975061..1975190 12..142 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:35 Download gff for BO06302.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1974230..1974480 509..761 98 -> Minus
arm_2L 1974564..1974818 254..508 100 -> Minus
arm_2L 1974881..1974991 143..253 100 -> Minus
arm_2L 1975061..1975190 12..142 97   Minus

BO06302.complete Sequence

769 bp (769 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630335

> BO06302.complete
GAAGTTATCAGTCGACATGGACGCTGGCGTGTGGTACCGCTCGCTGCCCC
GCTTCACCCGCTACTGGCTGACGGCCACCGTGGTGTTGAGCATGCTCTGC
CGCTTCGATGTGATACCCCTTCATTGGCTGCATCTGGACCGATCGGCCGT
TTTCAGCAAGCTGCAGCTCTGGCGCTGCATGACGTCACTGTTCGTCTTTC
CCATCTCGTCGAACACGGCCTTCCACTTCCTCATCAACTGCTTCTTCATC
GTTCAGTACAGCTCCAAACTGGAGAAGGATCAGTACAGCCGAAGTCCGGC
TGATTACCTGTACCTGTTGATCGTGTCGGCGGTGCTGGCCAACATCGGGG
GCATGATCTTCAACGTGTACTTCCTCATGGACACGCTGGTGCTGGCCATC
ACGTATATCTGGTGCCAGCTGAACAAGGACGTCACCGTGAGCTTCTGGTT
CGGCACCAGGTTCAAGGCCATGTACCTTCCCTGGGTGCTGGCCGCCTTCG
AGTTTATTTTCCACTTCTCGCTCGCCTCGCTGGTGGGCATATTCGTGGGA
CATGTGTACTACTTCTTCAAGTTCCAATACTCGCAGGATTTGGGCGGCAC
ACCCCTGTTGGAAACGCCGCAGTTCTTGAAGCGCCTGGTGCCAGATGTTT
CCGGCGGATTCGGCGGCTTCGGACTCCCACCGGAGAGCAGAGCACCACCT
AGGCAGGCGACCGAAAGTCCCTGGGGCCGGGGCATGACCTTGGGTCGCAA
CGCAAGCTTTCTAGACCAT

BO06302.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:21
Subject Length Description Subject Range Query Range Score Percent Strand
Der-1-RB 738 CG10908-PB 1..735 17..751 3675 100 Plus
Der-1-RA 738 CG10908-PA 1..735 17..751 3675 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:22
Subject Length Description Subject Range Query Range Score Percent Strand
Der-1-RB 1243 CG10908-RB 280..1014 17..751 3675 100 Plus
Der-1-RA 1088 CG10908-RA 125..859 17..751 3675 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:18
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 1974561..1974818 259..516 1290 100 Plus
2L 23513712 2L 1974236..1974480 17..261 1225 100 Plus
2L 23513712 2L 1975061..1975184 628..751 620 100 Plus
2L 23513712 2L 1974881..1974992 517..628 560 100 Plus
Blast to na_te.dros performed on 2014-11-26 15:49:20 has no hits.

BO06302.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:57 Download gff for BO06302.complete
Subject Subject Range Query Range Percent Splice Strand
CG10908-RA 1..738 17..754 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:24 Download gff for BO06302.complete
Subject Subject Range Query Range Percent Splice Strand
CG10908-RA 86..832 9..758 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:22 Download gff for BO06302.complete
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 125..859 17..753 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:58 Download gff for BO06302.complete
Subject Subject Range Query Range Percent Splice Strand
CG10908-RA 86..832 9..758 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:28 Download gff for BO06302.complete
Subject Subject Range Query Range Percent Splice Strand
Der-1-RA 125..859 17..753 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:28 Download gff for BO06302.complete
Subject Subject Range Query Range Percent Splice Strand
2L 1974564..1974818 262..516 100 -> Plus
2L 1974881..1974991 517..627 100 -> Plus
2L 1974236..1974480 17..261 100 -> Plus
2L 1975061..1975184 628..753 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:22 Download gff for BO06302.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 1974236..1974480 17..261 100 -> Plus
arm_2L 1974564..1974818 262..516 100 -> Plus
arm_2L 1974881..1974991 517..627 100 -> Plus
arm_2L 1975061..1975184 628..753 98   Plus

BO06302.pep Sequence

Translation from 16 to 769

> BO06302.pep
MDAGVWYRSLPRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQ
LWRCMTSLFVFPISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYL
LIVSAVLANIGGMIFNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFK
AMYLPWVLAAFEFIFHFSLASLVGIFVGHVYYFFKFQYSQDLGGTPLLET
PQFLKRLVPDVSGGFGGFGLPPESRAPPRQATESPWGRGMTLGRNASFLD
H

BO06302.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
Der-1-PB 245 CG10908-PB 1..245 1..245 1316 100 Plus
Der-1-PA 245 CG10908-PA 1..245 1..245 1316 100 Plus
Der-2-PA 261 CG14899-PA 7..248 6..233 268 29.4 Plus