Clone Sequence Records
BO06302.5prime Sequence
767 bp (766 high quality bases) assembled on 2005-12-03
> BO06302.5prime
GAAGTTATCAGTCGACATGGACGCTGGCGTGTGGTACCGCTCGCTGCCCC
GCTTCACCCGCTACTGGCTGACGGCCACCGTGGTGTTGAGCATGCTCTGC
CGCTTCGATGTGATACCCCTTCATTGGCTGCATCTGGACCGATCGGCCGT
TTTCAGCAAGCTGCAGCTCTGGCGCTGCATGACGTCACTGTTCGTCTTTC
CCATCTCGTCGAACACGGCCTTCCACTTCCTCATCAACTGCTTCTTCATC
GTTCAGTACAGCTCCAAACTGGAGAAGGATCAGTACAGCCGAAGTCCGGC
TGATTACCTGTACCTGTTGATCGTGTCGGCGGTGCTGGCCAACATCGGGG
GCATGATCTTCAACGTGTACTTCCTCATGGACACGCTGGTGCTGGCCATC
ACGTATATCTGGTGCCAGCTGAACAAGGACGTCACCGTGAGCTTCTGGTT
CGGCACCAGGTTCAAGGCCATGTACCTTCCCTGGGTGCTGGCCGCCTTCG
AGTTTATTTTCCACTTCTCGCTCGCCTCGCTGGTGGGCATATTCGTGGGA
CATGTGTACTACTTCTTCAAGTTCCAATACTCGCAGGATTTGGGCGGCAC
ACCCCTGTTGGAAACGCCGCAGTTCTTGAAGCGCCTGGTGCCAGATGTTT
CCGGCGGATTCGGCGGCTTCGGACTCCCACCGGAGAGCAGAGCACCACCT
AGGCAGGCGACCGAAAGTCCCTGGGGCCGGGGCATGACCTTGGGTCGCAA
CGCAAGCTTTCTAGACC
BO06302.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10908-PA | 738 | CG10908-RA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-1-RB | 1243 | CG10908-RB | 280..1014 | 17..751 | 3675 | 100 | Plus |
Der-1-RA | 1088 | CG10908-RA | 125..859 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1974561..1974818 | 259..516 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 1974236..1974480 | 17..261 | 1225 | 100 | Plus |
2L | 23513712 | 2L | 1975061..1975184 | 628..751 | 620 | 100 | Plus |
2L | 23513712 | 2L | 1974881..1974992 | 517..628 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:05:17 has no hits.
BO06302.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:44 Download gff for
BO06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-PA | 1..738 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:00 Download gff for
BO06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-PA | 1..738 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:15:46 Download gff for
BO06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 119..865 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:56:25 Download gff for
BO06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 119..865 | 9..758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:56:25 Download gff for
BO06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1974230..1974480 | 9..261 | 98 | -> | Plus |
2L | 1974564..1974818 | 262..516 | 100 | -> | Plus |
2L | 1974881..1974991 | 517..627 | 100 | -> | Plus |
2L | 1975061..1975190 | 628..758 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:15:46 Download gff for
BO06302.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1974230..1974480 | 9..261 | 98 | -> | Plus |
arm_2L | 1974564..1974818 | 262..516 | 100 | -> | Plus |
arm_2L | 1974881..1974991 | 517..627 | 100 | -> | Plus |
arm_2L | 1975061..1975190 | 628..758 | 97 | | Plus |
BO06302.3prime Sequence
767 bp (766 high quality bases) assembled on 2005-12-03
> BO06302.3prime
ATGGTCTAGAAAGCTTGCGTTGCGACCCAAGGTCATGCCCCGGCCCCAGG
GACTTTCGGTCGCCTGCCTAGGTGGTGCTCTGCTCTCCGGTGGGAGTCCG
AAGCCGCCGAATCCGCCGGAAACATCTGGCACCAGGCGCTTCAAGAACTG
CGGCGTTTCCAACAGGGGTGTGCCGCCCAAATCCTGCGAGTATTGGAACT
TGAAGAAGTAGTACACATGTCCCACGAATATGCCCACCAGCGAGGCGAGC
GAGAAGTGGAAAATAAACTCGAAGGCGGCCAGCACCCAGGGAAGGTACAT
GGCCTTGAACCTGGTGCCGAACCAGAAGCTCACGGTGACGTCCTTGTTCA
GCTGGCACCAGATATACGTGATGGCCAGCACCAGCGTGTCCATGAGGAAG
TACACGTTGAAGATCATGCCCCCGATGTTGGCCAGCACCGCCGACACGAT
CAACAGGTACAGGTAATCAGCCGGACTTCGGCTGTACTGATCCTTCTCCA
GTTTGGAGCTGTACTGAACGATGAAGAAGCAGTTGATGAGGAAGTGGAAG
GCCGTGTTCGACGAGATGGGAAAGACGAACAGTGACGTCATGCAGCGCCA
GAGCTGCAGCTTGCTGAAAACGGCCGATCGGTCCAGATGCAGCCAATGAA
GGGGTATCACATCGAAGCGGCAGAGCATGCTCAACACCACGGTGGCCGTC
AGCCAGTAGCGGGTGAAGCGGGGCAGCGAGCGGTACCACACGCCAGCGTC
CATGTCGACTGATAACT
BO06302.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG10908-PA | 738 | CG10908-RA | 1..735 | 753..19 | 3675 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-1-RB | 1243 | CG10908-RB | 280..1014 | 753..19 | 3675 | 100 | Minus |
Der-1-RA | 1088 | CG10908-RA | 125..859 | 753..19 | 3675 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1974561..1974818 | 511..254 | 1290 | 100 | Minus |
2L | 23513712 | 2L | 1974236..1974480 | 753..509 | 1225 | 100 | Minus |
2L | 23513712 | 2L | 1975061..1975184 | 142..19 | 620 | 100 | Minus |
2L | 23513712 | 2L | 1974881..1974992 | 253..142 | 560 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:28:59 has no hits.
BO06302.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:43 Download gff for
BO06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-PA | 1..738 | 16..753 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:16:59 Download gff for
BO06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-PA | 1..738 | 16..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:35 Download gff for
BO06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 119..865 | 12..761 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:13 Download gff for
BO06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 119..865 | 12..761 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:13 Download gff for
BO06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1974230..1974480 | 509..761 | 98 | -> | Minus |
2L | 1974564..1974818 | 254..508 | 100 | -> | Minus |
2L | 1974881..1974991 | 143..253 | 100 | -> | Minus |
2L | 1975061..1975190 | 12..142 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:35 Download gff for
BO06302.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1974230..1974480 | 509..761 | 98 | -> | Minus |
arm_2L | 1974564..1974818 | 254..508 | 100 | -> | Minus |
arm_2L | 1974881..1974991 | 143..253 | 100 | -> | Minus |
arm_2L | 1975061..1975190 | 12..142 | 97 | | Minus |
BO06302.complete Sequence
769 bp (769 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630335
> BO06302.complete
GAAGTTATCAGTCGACATGGACGCTGGCGTGTGGTACCGCTCGCTGCCCC
GCTTCACCCGCTACTGGCTGACGGCCACCGTGGTGTTGAGCATGCTCTGC
CGCTTCGATGTGATACCCCTTCATTGGCTGCATCTGGACCGATCGGCCGT
TTTCAGCAAGCTGCAGCTCTGGCGCTGCATGACGTCACTGTTCGTCTTTC
CCATCTCGTCGAACACGGCCTTCCACTTCCTCATCAACTGCTTCTTCATC
GTTCAGTACAGCTCCAAACTGGAGAAGGATCAGTACAGCCGAAGTCCGGC
TGATTACCTGTACCTGTTGATCGTGTCGGCGGTGCTGGCCAACATCGGGG
GCATGATCTTCAACGTGTACTTCCTCATGGACACGCTGGTGCTGGCCATC
ACGTATATCTGGTGCCAGCTGAACAAGGACGTCACCGTGAGCTTCTGGTT
CGGCACCAGGTTCAAGGCCATGTACCTTCCCTGGGTGCTGGCCGCCTTCG
AGTTTATTTTCCACTTCTCGCTCGCCTCGCTGGTGGGCATATTCGTGGGA
CATGTGTACTACTTCTTCAAGTTCCAATACTCGCAGGATTTGGGCGGCAC
ACCCCTGTTGGAAACGCCGCAGTTCTTGAAGCGCCTGGTGCCAGATGTTT
CCGGCGGATTCGGCGGCTTCGGACTCCCACCGGAGAGCAGAGCACCACCT
AGGCAGGCGACCGAAAGTCCCTGGGGCCGGGGCATGACCTTGGGTCGCAA
CGCAAGCTTTCTAGACCAT
BO06302.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-1-RB | 738 | CG10908-PB | 1..735 | 17..751 | 3675 | 100 | Plus |
Der-1-RA | 738 | CG10908-PA | 1..735 | 17..751 | 3675 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:49:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-1-RB | 1243 | CG10908-RB | 280..1014 | 17..751 | 3675 | 100 | Plus |
Der-1-RA | 1088 | CG10908-RA | 125..859 | 17..751 | 3675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:49:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 1974561..1974818 | 259..516 | 1290 | 100 | Plus |
2L | 23513712 | 2L | 1974236..1974480 | 17..261 | 1225 | 100 | Plus |
2L | 23513712 | 2L | 1975061..1975184 | 628..751 | 620 | 100 | Plus |
2L | 23513712 | 2L | 1974881..1974992 | 517..628 | 560 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:49:20 has no hits.
BO06302.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:57 Download gff for
BO06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-RA | 1..738 | 17..754 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:24 Download gff for
BO06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-RA | 86..832 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 01:45:22 Download gff for
BO06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 125..859 | 17..753 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:58 Download gff for
BO06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG10908-RA | 86..832 | 9..758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 17:04:28 Download gff for
BO06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Der-1-RA | 125..859 | 17..753 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 17:04:28 Download gff for
BO06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 1974564..1974818 | 262..516 | 100 | -> | Plus |
2L | 1974881..1974991 | 517..627 | 100 | -> | Plus |
2L | 1974236..1974480 | 17..261 | 100 | -> | Plus |
2L | 1975061..1975184 | 628..753 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 01:45:22 Download gff for
BO06302.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 1974236..1974480 | 17..261 | 100 | -> | Plus |
arm_2L | 1974564..1974818 | 262..516 | 100 | -> | Plus |
arm_2L | 1974881..1974991 | 517..627 | 100 | -> | Plus |
arm_2L | 1975061..1975184 | 628..753 | 98 | | Plus |
BO06302.pep Sequence
Translation from 16 to 769
> BO06302.pep
MDAGVWYRSLPRFTRYWLTATVVLSMLCRFDVIPLHWLHLDRSAVFSKLQ
LWRCMTSLFVFPISSNTAFHFLINCFFIVQYSSKLEKDQYSRSPADYLYL
LIVSAVLANIGGMIFNVYFLMDTLVLAITYIWCQLNKDVTVSFWFGTRFK
AMYLPWVLAAFEFIFHFSLASLVGIFVGHVYYFFKFQYSQDLGGTPLLET
PQFLKRLVPDVSGGFGGFGLPPESRAPPRQATESPWGRGMTLGRNASFLD
H
BO06302.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Der-1-PB | 245 | CG10908-PB | 1..245 | 1..245 | 1316 | 100 | Plus |
Der-1-PA | 245 | CG10908-PA | 1..245 | 1..245 | 1316 | 100 | Plus |
Der-2-PA | 261 | CG14899-PA | 7..248 | 6..233 | 268 | 29.4 | Plus |