Clone Sequence Records
BO06304.3prime Sequence
848 bp (749 high quality bases) assembled on 2005-12-03
> BO06304.3prime
ATGGTCTAGAAAGCTTGCTTGAGGATCGCTGTTTTCGAACTCGGTCTGAA
ATACGCTGGGTATTTGATTGACCATGTCACTGGCCAGTAGGCTGCGGCCA
AACTTTTGAAATGCAGCCGCGTTTAACTTTTTCACAAAGTAACTAGAGGC
ACATGCAGCTACCAGGGCGGGATTGGGTTCACCCGACTGCAGTGACCACG
AGAAGAAGGTGGCCAAAGATCCGGAGAGCAGGTCACCTTGTCCACCGCAC
CTGCGACCGGAACCGCCGCTAGGCATTGAGTGAACTTCGTTGCAGTGAGG
GAGATAGATCTTGTCGTTGGCGCCCTTCTCCAGGACAGTTACTCCGGCTC
CCAGGAGGGACATTTTCTGGCGCGCCGCCTGGTCATCCTCGCCAAACAGT
CTCTGGAACTCCATGACATTTGGCGTGAGTATGACATTCGGCTGTCCACA
GATCAGATTCAGATTGTCGTTGAGCAGAAACAGTCCATCGGCGTCTATGA
CAACTGGTTTCTTGGTGTCCATGCACAGCTTGAGTACGTTGGATGCCGTC
TTCAGGATGCCCGGCTCCCGACCCAGTCCAGGTCCAATAACAACGACGTG
AAGTCGCTCTAACCAGGGCGCTATTCTCTCCACTGCATCCACACAGTCTA
GCACTGGATGCACGATAAGATCGGGACTGTAGGACTTGATAATGGCCGAC
GCATTTGAATGGCAGAACACATGCGCCAGGTCAGCGCCCACTCTTATCGA
GGAAATGGCCGCGAAGTACGGCGCTCCGGTGTACTCCAGGGACCCACCGA
TCACTCCAATGCGTCCGTACTGTCCCTTGTGCTTGTTGTTCACCAGCT
BO06304.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-PA | 903 | CG10424-RA | 71..900 | 848..19 | 4150 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:04:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-RA | 1233 | CG10424-RA | 148..977 | 848..19 | 4150 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:04:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19096655..19097227 | 19..591 | 2865 | 100 | Plus |
| 3L | 28110227 | 3L | 19097304..19097562 | 590..848 | 1295 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-13 01:04:38 has no hits.
BO06304.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:45 Download gff for
BO06304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-PA | 71..903 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:02 Download gff for
BO06304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-PA | 71..903 | 18..848 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 06:28:47 Download gff for
BO06304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 148..977 | 19..848 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:54:52 Download gff for
BO06304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 148..977 | 19..848 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:54:52 Download gff for
BO06304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19097306..19097562 | 592..848 | 100 | | Plus |
| 3L | 19096655..19097227 | 19..591 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 06:28:47 Download gff for
BO06304.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19089755..19090327 | 19..591 | 100 | <- | Plus |
| arm_3L | 19090406..19090662 | 592..848 | 100 | | Plus |
BO06304.5prime Sequence
893 bp (849 high quality bases) assembled on 2005-12-03
> BO06304.5prime
GAAGTTATCAGTCGACATGGCTGCAGTTTCGGATATTCCAGTGCACCTGC
CCAAGCTGCTGGCTCTGTTCAAGACGGTGGTGCCCAAGCTGGTGAACAAC
AAGCACAAGGGACAGTACGGACGCATTGGAGTGATCGGTGGGTCCCTGGA
GTACACCGGAGCGCCGTACTTCGCGGCCATTTCCTCGATAAGAGTGGGCG
CTGACCTGGCGCATGTGTTCTGCCATTCAAATGCGTCGGCCATTATCAAG
TCCTACAGTCCCGATCTTATCGTGCATCCAGTGCTAGACTGTGTGGATGC
AGTGGAGAGAATAGCGCCCTGGTTAGAGCGACTTCACGTCGTTGTTATTG
GACCTGGACTGGGTCGGGAGCCGGGCATCCTGAAGACGGCATCCAACGTA
CTCAAGCTGTGCATGGACACCAAGAAACCAGTTGTCATAGACGCCGATGG
ACTGTTTCTGCTCAACGACAATCTGAATCTGATCTGTGGACAGCCGAATG
TCATACTCACGCCAAATGTCATGGAGTTCCAGAGACTGTTTGGCGAGGAT
GACCAGGCGGCGCGCCAGAAAATGTCCCTCCTGGGAGCCGGAGTAACTGT
CCTGGAGAAGGGCGCCAACGACAAGATCTATCTCCCTCACTGCAACGAAG
TTCACTCAATGCCTAGCGGCGGTTCCGGTCGCAGGTGCGGTGGACAAGGT
GACCTGCTCTCCGGATCTTTGGCCACCTTCTTCTCGTGGTCACTGCAGTC
GGGTGAACCCAATCCCGCCCTGGTAGCTGCATGTGCCTCTAGTTACTTTG
TGAAAAAGTTAAACGCGGCTGCATTTCAAAAGTTTGGCCGCAGCCTACTG
GCCAGTGACATGGTCAATCAAATACCCAGCGTATTTCAGACCG
BO06304.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-PA | 903 | CG10424-RA | 1..877 | 17..893 | 4385 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 01:05:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-RA | 1233 | CG10424-RA | 78..954 | 17..893 | 4385 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 01:05:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19096678..19097227 | 893..344 | 2750 | 100 | Minus |
| 3L | 28110227 | 3L | 19097304..19097632 | 345..17 | 1645 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 01:05:41 has no hits.
BO06304.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:46 Download gff for
BO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:04 Download gff for
BO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-PA | 1..877 | 17..893 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-31 20:15:48 Download gff for
BO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 72..954 | 11..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 02:57:20 Download gff for
BO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 72..954 | 11..893 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 02:57:20 Download gff for
BO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19096678..19097227 | 344..893 | 100 | <- | Minus |
| 3L | 19097306..19097638 | 11..343 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-31 20:15:48 Download gff for
BO06304.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19089778..19090327 | 344..893 | 100 | <- | Minus |
| arm_3L | 19090406..19090738 | 11..343 | 99 | | Minus |
BO06304.complete Sequence
934 bp (934 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630336
> BO06304.complete
GAAGTTATCAGTCGACATGGCTGCAGTTTCGGATATTCCAGTGCACCTGC
CCAAGCTGCTGGCTCTGTTCAAGACGGTGGTGCCCAAGCTGGTGAACAAC
AAGCACAAGGGACAGTACGGACGCATTGGAGTGATCGGTGGGTCCCTGGA
GTACACCGGAGCGCCGTACTTCGCGGCCATTTCCTCGATAAGAGTGGGCG
CTGACCTGGCGCATGTGTTCTGCCATTCAAATGCGTCGGCCATTATCAAG
TCCTACAGTCCCGATCTTATCGTGCATCCAGTGCTAGACTGTGTGGATGC
AGTGGAGAGAATAGCGCCCTGGTTAGAGCGACTTCACGTCGTTGTTATTG
GACCTGGACTGGGTCGGGAGCCGGGCATCCTGAAGACGGCATCCAACGTA
CTCAAGCTGTGCATGGACACCAAGAAACCAGTTGTCATAGACGCCGATGG
ACTGTTTCTGCTCAACGACAATCTGAATCTGATCTGTGGACAGCCGAATG
TCATACTCACGCCAAATGTCATGGAGTTCCAGAGACTGTTTGGCGAGGAT
GACCAGGCGGCGCGCCAGAAAATGTCCCTCCTGGGAGCCGGAGTAACTGT
CCTGGAGAAGGGCGCCAACGACAAGATCTATCTCCCTCACTGCAACGAAG
TTCACTCAATGCCTAGCGGCGGTTCCGGTCGCAGGTGCGGTGGACAAGGT
GACCTGCTCTCCGGATCTTTGGCCACCTTCTTCTCGTGGTCACTGCAGTC
GGGTGAACCCAATCCCGCCCTGGTAGCTGCATGTGCCTCTAGTTACTTTG
TGAAAAAGTTAAACGCGGCTGCATTTCAAAAGTTTGGCCGCAGCCTACTG
GCCAGTGACATGGTCAATCAAATACCCAGCGTATTTCAGACCGAGTTCGA
AAACAGCGATCCTCAAGCAAGCTTTCTAGACCAT
BO06304.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-RA | 903 | CG10424-PA | 1..900 | 17..916 | 4500 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-RA | 1233 | CG10424-RA | 78..977 | 17..916 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:46:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19096655..19097227 | 916..344 | 2865 | 100 | Minus |
| 3L | 28110227 | 3L | 19097304..19097632 | 345..17 | 1645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 14:46:39 has no hits.
BO06304.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:59 Download gff for
BO06304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 1..903 | 17..917 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:26 Download gff for
BO06304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 75..980 | 11..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:32:53 Download gff for
BO06304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 78..977 | 17..918 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:59 Download gff for
BO06304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 75..980 | 11..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:52:35 Download gff for
BO06304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10424-RA | 78..977 | 17..918 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:52:35 Download gff for
BO06304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19096653..19097227 | 344..918 | 99 | <- | Minus |
| 3L | 19097306..19097632 | 17..343 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:32:53 Download gff for
BO06304.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19090406..19090732 | 17..343 | 100 | | Minus |
| arm_3L | 19089753..19090327 | 344..918 | 99 | <- | Minus |
BO06304.pep Sequence
Translation from 16 to 934
> BO06304.pep
MAAVSDIPVHLPKLLALFKTVVPKLVNNKHKGQYGRIGVIGGSLEYTGAP
YFAAISSIRVGADLAHVFCHSNASAIIKSYSPDLIVHPVLDCVDAVERIA
PWLERLHVVVIGPGLGREPGILKTASNVLKLCMDTKKPVVIDADGLFLLN
DNLNLICGQPNVILTPNVMEFQRLFGEDDQAARQKMSLLGAGVTVLEKGA
NDKIYLPHCNEVHSMPSGGSGRRCGGQGDLLSGSLATFFSWSLQSGEPNP
ALVAACASSYFVKKLNAAAFQKFGRSLLASDMVNQIPSVFQTEFENSDPQ
ASFLDH
BO06304.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:21:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10424-PA | 300 | CG10424-PA | 1..300 | 1..300 | 1553 | 100 | Plus |
