Clone Sequence Records
BO06305.3prime Sequence
855 bp (761 high quality bases) assembled on 2005-12-03
> BO06305.3prime
ATGGTCTAGAAAGCTTGCCGCCTCCTTCAGGAATCGAATAATGTGGGGCG
CCACTCGATCCGGGGTGACCAGGTGCAGATGATGGGTGCCGGGCACCTCA
ACGTAGACCACCTTCGCGGCATTCTCCCGCAGCGTGGCAATCACATCCGC
ATACACCTGTGGCGTCTCGAACTTCATGCCGGGAATACCCCGAATGTTGA
GCACGCGACAGCGAATCTGGCGTGCGTAGGCCAACGTCTGCTCGGCGGTG
AACATGCCCAGCAGGCTTACTTTTAGCCTCAGATCCCTGGCAAAGAGGTA
GCCATTCTTGCTCGGATTGTGCCTCATTCCCCTGTTCATGAGCACACGAA
CCGAAGGCTCATCCACGGACCCATCGTACGCGTCCAGCACCAGTTTGATC
ATCTCGTCGTACGAGTAGCAGGGCTGCTTGCTCTCCGGCAGGGTTTCGTA
GTCCAGGAACTTGTCCAGCGCCCTGCCAGTGCCCTCCGCCATCCGTTGGG
TGCCGCGCACCGTGGGACCCGCGATATCGATGTTGATCAGCTTCTCCACC
TCCGTGGGAAAGCTGGCCGCGTACATGAAGGTCAGAGCTCCGCCCAGCGA
GTGGCCCAGCAGAGTGACGTTCTTCCAGTTATACTTGCGGACTATCCGGC
GAATCAGGCATATGCCGTCCCAGAAGATGAAGTACTGCATGCCCATCGGA
TAGTGCGACGACTTGCCGTGCCCGGGCAGATCGATGGCCAGGATGGAGGT
GTCCGCCGGTAGCAGGGGGCACAGCCTGTCGAAGCTGCCGCAGTTGTCCT
GGCAGCCGTGCAGGGCGATGATGGGCTGCCTCTCCTTTCGAGCCCACCAC
TTGGC
BO06305.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3943-PA | 996 | kraken-RA | 175..993 | 837..19 | 4070 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kraken-RB | 1240 | CG3943-RB | 245..1081 | 855..19 | 4125 | 99.6 | Minus |
kraken-RA | 1320 | CG3943-RA | 325..1161 | 855..19 | 4125 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 853544..854380 | 855..19 | 4095 | 99.3 | Minus |
Blast to na_te.dros performed on 2015-02-12 01:29:06 has no hits.
BO06305.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:48 Download gff for
BO06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3943-PA | 157..996 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:05 Download gff for
BO06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3943-PA | 157..996 | 15..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:36 Download gff for
BO06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 325..1168 | 11..855 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:35 Download gff for
BO06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 325..1168 | 11..855 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:35 Download gff for
BO06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 853544..854387 | 11..855 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:36 Download gff for
BO06305.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 853544..854387 | 11..855 | 99 | | Minus |
BO06305.5prime Sequence
826 bp (753 high quality bases) assembled on 2005-12-03
> BO06305.5prime
GAAGTTATCAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGG
CGCAATCTCCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAG
GAGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGC
GGTGCCCTGGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGC
AGCCCATCATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGAC
AGGCTGTGCCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCT
GCCCGGGCACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCA
TCTTCTGGGACGGCATATGCCTGATTCGCCGGATAGTCCGCAAGTATAAC
TGGAAGAACGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTT
CATGTACGCGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCG
ATATCGCGGGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACT
GGCAGGGCGCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAA
GCAGCCCTGCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGT
ACGATGGGTCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGA
ATGAGGCACAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAG
GCTAANAGTAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCT
ACGCACGCCAGATTCGCTGTCGCGTG
BO06305.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3943-PA | 996 | kraken-RA | 1..810 | 17..826 | 4031 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kraken-RB | 1240 | CG3943-RB | 88..898 | 16..826 | 4044 | 99.9 | Plus |
kraken-RA | 1320 | CG3943-RA | 168..978 | 16..826 | 4044 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 853544..854197 | 173..826 | 3259 | 99.8 | Plus |
2L | 23513712 | 2L | 853192..853278 | 87..173 | 435 | 100 | Plus |
2L | 23513712 | 2L | 852935..853005 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:03:16 has no hits.
BO06305.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:49 Download gff for
BO06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3943-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:06 Download gff for
BO06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3943-PA | 1..810 | 17..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:24 Download gff for
BO06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 162..978 | 7..826 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:25 Download gff for
BO06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 162..978 | 7..826 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:25 Download gff for
BO06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 852929..853005 | 7..86 | 95 | -> | Plus |
2L | 853192..853278 | 87..173 | 100 | -> | Plus |
2L | 853545..854197 | 174..826 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:24 Download gff for
BO06305.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 852929..853005 | 7..86 | 95 | -> | Plus |
arm_2L | 853192..853278 | 87..173 | 100 | -> | Plus |
arm_2L | 853545..854197 | 174..826 | 99 | | Plus |
BO06305.complete Sequence
1027 bp (1027 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630337
> BO06305.complete
GAAGTTATCAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGG
CGCAATCTCCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAG
GAGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGC
GGTGCCCTGGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGC
AGCCCATCATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGAC
AGGCTGTGCCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCT
GCCCGGGCACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCA
TCTTCTGGGACGGCATATGCCTGATTCGCCGGATAGTCCGCAAGTATAAC
TGGAAGAACGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTT
CATGTACGCGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCG
ATATCGCGGGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACT
GGCAGGGCGCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAA
GCAGCCCTGCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGT
ACGATGGGTCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGA
ATGAGGCACAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAG
GCTAAAAGTAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCT
ACGCACGCCAGATTCGCTGTCGCGTGCTCAACATTCGGGGTATTCCCGGC
ATGAAGTTCGAGACGCCACAGGTGTATGCGGATGTGATTGCCACGCTGCG
GGAGAATGCCGCGAAGGTGGTCTACGTTGAGGTGCCCGGCACCCATCATC
TGCACCTGGTCACCCCGGATCGAGTGGCGCCCCACATTATTCGATTCCTG
AAGGAGGCGGCAAGCTTTCTAGACCAT
BO06305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kraken-RB | 996 | CG3943-PB | 1..993 | 17..1009 | 4965 | 100 | Plus |
kraken-RA | 996 | CG3943-PA | 1..993 | 17..1009 | 4965 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kraken-RB | 1240 | CG3943-RB | 88..1081 | 16..1009 | 4970 | 100 | Plus |
kraken-RA | 1320 | CG3943-RA | 168..1161 | 16..1009 | 4970 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 853544..854380 | 173..1009 | 4185 | 100 | Plus |
2L | 23513712 | 2L | 853192..853278 | 87..173 | 435 | 100 | Plus |
2L | 23513712 | 2L | 852935..853005 | 16..86 | 355 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 08:38:34 has no hits.
BO06305.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:39 Download gff for
BO06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 1..996 | 17..1013 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:01 Download gff for
BO06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 163..1169 | 7..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:54 Download gff for
BO06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 169..1161 | 17..1011 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:39 Download gff for
BO06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 163..1169 | 7..1017 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:49 Download gff for
BO06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
kraken-RA | 169..1161 | 17..1011 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:49 Download gff for
BO06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 852936..853005 | 17..86 | 100 | -> | Plus |
2L | 853192..853278 | 87..173 | 100 | -> | Plus |
2L | 853545..854380 | 174..1011 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:54 Download gff for
BO06305.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 852936..853005 | 17..86 | 100 | -> | Plus |
arm_2L | 853192..853278 | 87..173 | 100 | -> | Plus |
arm_2L | 853545..854380 | 174..1011 | 99 | | Plus |
BO06305.pep Sequence
Translation from 16 to 1027
> BO06305.pep
MGQTRVAATTAAQSPAAELSPETNGQTEEPLQLLGEDSWEEFSIAVPWGT
VEAKWWGSKERQPIIALHGWQDNCGSFDRLCPLLPADTSILAIDLPGHGK
SSHYPMGMQYFIFWDGICLIRRIVRKYNWKNVTLLGHSLGGALTFMYAAS
FPTEVEKLINIDIAGPTVRGTQRMAEGTGRALDKFLDYETLPESKQPCYS
YDEMIKLVLDAYDGSVDEPSVRVLMNRGMRHNPSKNGYLFARDLRLKVSL
LGMFTAEQTLAYARQIRCRVLNIRGIPGMKFETPQVYADVIATLRENAAK
VVYVEVPGTHHLHLVTPDRVAPHIIRFLKEAASFLDH
BO06305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
kraken-PB | 331 | CG3943-PB | 1..331 | 1..331 | 1752 | 100 | Plus |
kraken-PA | 331 | CG3943-PA | 1..331 | 1..331 | 1752 | 100 | Plus |
CG7632-PA | 330 | CG7632-PA | 25..324 | 29..328 | 518 | 35.7 | Plus |
CG7632-PB | 312 | CG7632-PB | 15..306 | 38..328 | 516 | 36.1 | Plus |
CG11309-PF | 348 | CG11309-PF | 37..326 | 41..329 | 495 | 37.3 | Plus |