Clone BO06305 Report

Search the DGRC for BO06305

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:5
Vector:pDNR-Dual
Associated Gene/Transcriptkraken-RA
Protein status:BO06305.pep: validated full length
Sequenced Size:1027

Clone Sequence Records

BO06305.3prime Sequence

855 bp (761 high quality bases) assembled on 2005-12-03

> BO06305.3prime
ATGGTCTAGAAAGCTTGCCGCCTCCTTCAGGAATCGAATAATGTGGGGCG
CCACTCGATCCGGGGTGACCAGGTGCAGATGATGGGTGCCGGGCACCTCA
ACGTAGACCACCTTCGCGGCATTCTCCCGCAGCGTGGCAATCACATCCGC
ATACACCTGTGGCGTCTCGAACTTCATGCCGGGAATACCCCGAATGTTGA
GCACGCGACAGCGAATCTGGCGTGCGTAGGCCAACGTCTGCTCGGCGGTG
AACATGCCCAGCAGGCTTACTTTTAGCCTCAGATCCCTGGCAAAGAGGTA
GCCATTCTTGCTCGGATTGTGCCTCATTCCCCTGTTCATGAGCACACGAA
CCGAAGGCTCATCCACGGACCCATCGTACGCGTCCAGCACCAGTTTGATC
ATCTCGTCGTACGAGTAGCAGGGCTGCTTGCTCTCCGGCAGGGTTTCGTA
GTCCAGGAACTTGTCCAGCGCCCTGCCAGTGCCCTCCGCCATCCGTTGGG
TGCCGCGCACCGTGGGACCCGCGATATCGATGTTGATCAGCTTCTCCACC
TCCGTGGGAAAGCTGGCCGCGTACATGAAGGTCAGAGCTCCGCCCAGCGA
GTGGCCCAGCAGAGTGACGTTCTTCCAGTTATACTTGCGGACTATCCGGC
GAATCAGGCATATGCCGTCCCAGAAGATGAAGTACTGCATGCCCATCGGA
TAGTGCGACGACTTGCCGTGCCCGGGCAGATCGATGGCCAGGATGGAGGT
GTCCGCCGGTAGCAGGGGGCACAGCCTGTCGAAGCTGCCGCAGTTGTCCT
GGCAGCCGTGCAGGGCGATGATGGGCTGCCTCTCCTTTCGAGCCCACCAC
TTGGC

BO06305.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3943-PA 996 kraken-RA 175..993 837..19 4070 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:29:08
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-RB 1240 CG3943-RB 245..1081 855..19 4125 99.6 Minus
kraken-RA 1320 CG3943-RA 325..1161 855..19 4125 99.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 01:29:04
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 853544..854380 855..19 4095 99.3 Minus
Blast to na_te.dros performed on 2015-02-12 01:29:06 has no hits.

BO06305.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:48 Download gff for BO06305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3943-PA 157..996 15..855 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:05 Download gff for BO06305.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3943-PA 157..996 15..855 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:36 Download gff for BO06305.3prime
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 325..1168 11..855 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 05:50:35 Download gff for BO06305.3prime
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 325..1168 11..855 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 05:50:35 Download gff for BO06305.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 853544..854387 11..855 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:36 Download gff for BO06305.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 853544..854387 11..855 99   Minus

BO06305.5prime Sequence

826 bp (753 high quality bases) assembled on 2005-12-03

> BO06305.5prime
GAAGTTATCAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGG
CGCAATCTCCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAG
GAGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGC
GGTGCCCTGGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGC
AGCCCATCATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGAC
AGGCTGTGCCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCT
GCCCGGGCACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCA
TCTTCTGGGACGGCATATGCCTGATTCGCCGGATAGTCCGCAAGTATAAC
TGGAAGAACGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTT
CATGTACGCGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCG
ATATCGCGGGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACT
GGCAGGGCGCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAA
GCAGCCCTGCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGT
ACGATGGGTCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGA
ATGAGGCACAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAG
GCTAANAGTAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCT
ACGCACGCCAGATTCGCTGTCGCGTG

BO06305.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3943-PA 996 kraken-RA 1..810 17..826 4031 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:18
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-RB 1240 CG3943-RB 88..898 16..826 4044 99.9 Plus
kraken-RA 1320 CG3943-RA 168..978 16..826 4044 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:15
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 853544..854197 173..826 3259 99.8 Plus
2L 23513712 2L 853192..853278 87..173 435 100 Plus
2L 23513712 2L 852935..853005 16..86 355 100 Plus
Blast to na_te.dros performed on 2015-02-11 05:03:16 has no hits.

BO06305.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:49 Download gff for BO06305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3943-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:06 Download gff for BO06305.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3943-PA 1..810 17..826 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:24 Download gff for BO06305.5prime
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 162..978 7..826 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:25 Download gff for BO06305.5prime
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 162..978 7..826 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:25 Download gff for BO06305.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 852929..853005 7..86 95 -> Plus
2L 853192..853278 87..173 100 -> Plus
2L 853545..854197 174..826 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:24 Download gff for BO06305.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 852929..853005 7..86 95 -> Plus
arm_2L 853192..853278 87..173 100 -> Plus
arm_2L 853545..854197 174..826 99   Plus

BO06305.complete Sequence

1027 bp (1027 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630337

> BO06305.complete
GAAGTTATCAGTCGACATGGGCCAGACACGCGTGGCAGCAACAACAGCGG
CGCAATCTCCCGCGGCGGAACTTTCGCCAGAGACAAATGGCCAGACGGAG
GAGCCCCTGCAGCTGCTGGGCGAGGACAGCTGGGAGGAGTTCTCTATCGC
GGTGCCCTGGGGAACCGTTGAGGCCAAGTGGTGGGGCTCGAAGGAGAGGC
AGCCCATCATCGCCCTGCACGGCTGGCAGGACAACTGCGGCAGCTTCGAC
AGGCTGTGCCCCCTGCTACCGGCGGACACCTCCATCCTGGCCATCGATCT
GCCCGGGCACGGCAAGTCGTCGCACTATCCGATGGGCATGCAGTACTTCA
TCTTCTGGGACGGCATATGCCTGATTCGCCGGATAGTCCGCAAGTATAAC
TGGAAGAACGTCACTCTGCTGGGCCACTCGCTGGGCGGAGCTCTGACCTT
CATGTACGCGGCCAGCTTTCCCACGGAGGTGGAGAAGCTGATCAACATCG
ATATCGCGGGTCCCACGGTGCGCGGCACCCAACGGATGGCGGAGGGCACT
GGCAGGGCGCTGGACAAGTTCCTGGACTACGAAACCCTGCCGGAGAGCAA
GCAGCCCTGCTACTCGTACGACGAGATGATCAAACTGGTGCTGGACGCGT
ACGATGGGTCCGTGGATGAGCCTTCGGTTCGTGTGCTCATGAACAGGGGA
ATGAGGCACAATCCGAGCAAGAATGGCTACCTCTTTGCCAGGGATCTGAG
GCTAAAAGTAAGCCTGCTGGGCATGTTCACCGCCGAGCAGACGTTGGCCT
ACGCACGCCAGATTCGCTGTCGCGTGCTCAACATTCGGGGTATTCCCGGC
ATGAAGTTCGAGACGCCACAGGTGTATGCGGATGTGATTGCCACGCTGCG
GGAGAATGCCGCGAAGGTGGTCTACGTTGAGGTGCCCGGCACCCATCATC
TGCACCTGGTCACCCCGGATCGAGTGGCGCCCCACATTATTCGATTCCTG
AAGGAGGCGGCAAGCTTTCTAGACCAT

BO06305.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 08:38:35
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-RB 996 CG3943-PB 1..993 17..1009 4965 100 Plus
kraken-RA 996 CG3943-PA 1..993 17..1009 4965 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:38:36
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-RB 1240 CG3943-RB 88..1081 16..1009 4970 100 Plus
kraken-RA 1320 CG3943-RA 168..1161 16..1009 4970 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 08:38:33
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 853544..854380 173..1009 4185 100 Plus
2L 23513712 2L 853192..853278 87..173 435 100 Plus
2L 23513712 2L 852935..853005 16..86 355 100 Plus
Blast to na_te.dros performed on 2014-11-27 08:38:34 has no hits.

BO06305.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:39 Download gff for BO06305.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 1..996 17..1013 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:01 Download gff for BO06305.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 163..1169 7..1017 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 10:00:54 Download gff for BO06305.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 169..1161 17..1011 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:39 Download gff for BO06305.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 163..1169 7..1017 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 09:23:49 Download gff for BO06305.complete
Subject Subject Range Query Range Percent Splice Strand
kraken-RA 169..1161 17..1011 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 09:23:49 Download gff for BO06305.complete
Subject Subject Range Query Range Percent Splice Strand
2L 852936..853005 17..86 100 -> Plus
2L 853192..853278 87..173 100 -> Plus
2L 853545..854380 174..1011 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 10:00:54 Download gff for BO06305.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 852936..853005 17..86 100 -> Plus
arm_2L 853192..853278 87..173 100 -> Plus
arm_2L 853545..854380 174..1011 99   Plus

BO06305.pep Sequence

Translation from 16 to 1027

> BO06305.pep
MGQTRVAATTAAQSPAAELSPETNGQTEEPLQLLGEDSWEEFSIAVPWGT
VEAKWWGSKERQPIIALHGWQDNCGSFDRLCPLLPADTSILAIDLPGHGK
SSHYPMGMQYFIFWDGICLIRRIVRKYNWKNVTLLGHSLGGALTFMYAAS
FPTEVEKLINIDIAGPTVRGTQRMAEGTGRALDKFLDYETLPESKQPCYS
YDEMIKLVLDAYDGSVDEPSVRVLMNRGMRHNPSKNGYLFARDLRLKVSL
LGMFTAEQTLAYARQIRCRVLNIRGIPGMKFETPQVYADVIATLRENAAK
VVYVEVPGTHHLHLVTPDRVAPHIIRFLKEAASFLDH

BO06305.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:38
Subject Length Description Subject Range Query Range Score Percent Strand
kraken-PB 331 CG3943-PB 1..331 1..331 1752 100 Plus
kraken-PA 331 CG3943-PA 1..331 1..331 1752 100 Plus
CG7632-PA 330 CG7632-PA 25..324 29..328 518 35.7 Plus
CG7632-PB 312 CG7632-PB 15..306 38..328 516 36.1 Plus
CG11309-PF 348 CG11309-PF 37..326 41..329 495 37.3 Plus