Clone Sequence Records
BO06309.3prime Sequence
802 bp (746 high quality bases) assembled on 2005-12-03
> BO06309.3prime
ATGGTCTAGAAAGCTTGCGTAGCTTCGGGCCAGTTCTGCATGCATCACCG
CCAGCAGCTGCCTTTCCATGTCGCTCAGCGATCCAAATTCGGCTCCAAAG
TCGCGCAGCAGGTGCTTTAGATCGCACATTTTACGCTCCACCCAGGCGCA
CGTAATCTCCGCCAGCGCATACTGCTGCTGTTCGGGCACAAATGCTCCCG
GACGCTCCGCGGATCCACCGTCGTCCGCCGAACAGGGGAGCGACTCGAAC
TGCGCCAGGTTGTAGTAGTACTCGATCAGCTTGATGTGGGCGGGTGACTG
GCGTGCGGGAGGCAGGTTCAAATGGACTAGGAGCAGCAGACGCAGCACCT
CAACGCGCCGCAATAGTTCACCGTACATGCGAGCACCGCGTCGCTCGTAA
ACATTGTCCACAATGTCGTCGTAATGCTGCAGTGCACTGCGAAAATCGCC
GCGCTGGCCACTCGTTTCGGCGCTGATTTCCAGGTCATGGATCTGATGGG
TGGGCGAGGCAAAGCTGCTGGTGCTGTCCAGCTGCCGCTGCAGCTGCTTC
AACTCGCGCAGAATGGCCGCCTTGAAGACGCAACCGTCCACCGCTCGATC
CGCCGCACGGTGATAGCAGTGCACCGCTCCCTCCCGAAATCCCGAGTGGC
GGGTGCGCAGATGCAGTCGCCCGGACTCGTTGTGCGCCGCTAGGAAGGAT
CTAGCTGCCCGCAGATAGGCCTCCGATTCGCGCTGCGGTGCGCCGCCGTA
AGACTCGCACTTGGCATAGCCAATGTGGCACATGGCCGCATACTGCTGTA
TG
BO06309.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-PA | 1038 | CG8134-RA | 252..1035 | 802..19 | 3895 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-RB | 1496 | CG8134-RB | 355..1138 | 802..19 | 3905 | 99.9 | Minus |
| CG8134-RA | 1421 | CG8134-RA | 355..1138 | 802..19 | 3905 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15704665..15705448 | 802..19 | 3905 | 99.9 | Minus |
Blast to na_te.dros performed on 2015-02-12 10:31:49 has no hits.
BO06309.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:55 Download gff for
BO06309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-PA | 252..1038 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:16 Download gff for
BO06309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-PA | 252..1038 | 18..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:28 Download gff for
BO06309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 355..1145 | 10..802 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:03 Download gff for
BO06309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 355..1145 | 10..802 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:03 Download gff for
BO06309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15704665..15705455 | 10..802 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:28 Download gff for
BO06309.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15598698..15599488 | 10..802 | 99 | | Minus |
BO06309.5prime Sequence
811 bp (756 high quality bases) assembled on 2005-12-03
> BO06309.5prime
GAAGTTATCAGTCGACATGGATAAACTCCGCGGCGGCAGTCTGGGCGGCG
GCGGATCCTCCAGCGGCGCGCCATCGACGGCTCCGGGCCATGAGCACCAC
CAACTGGAGCAGTATCAGTACCCCAAAAACCTGATCGAGCAATATCTAAG
GGCCTCCAGCAAGATCAAGAAGTTCGAGCGGGCCGGCTTCTTCAAACGCT
TTGCGCCCAGCGTGGTCGATGTGCAGGCGGACTTCCAGCGACTGGCCTAC
AGCTTCGAGGAGTCGGGCATACAGCAGTATGCGGCCATGTGCCACATTGG
CTATGCCAAGTGCGAGTCCTACGGCGGCGCACCGCAGCGCGAATCGGAGG
CCTATCTGCGGGCAGCTAGATCCTTCCTAGCGGCGCACAACGAGTCCGGG
CGACTGCATCTGCGCACCCGCCACTCGGGATTTCGGGAGGGAGCGGTGCA
CTGCTATCACCGTGCGGCGGATCGAGCGGTGGACGGTTGCGTCTTCAAGG
CGGCCATTCTGCGCGAGTTGAAGCAGCTGCAGCGGCAGCTGGACAGCACC
AGCAGCTTTGCCTCGCCCACCCATCAGATCCATGACCTGGAAATCAGCGC
CGAAACGAGTGGCCAGCGCGGCGATTTTCGCAGTGCACTGCAGCATTACG
ACGACATTGTGGACAATGTTTACGAGCGACGCGGTGCTCGCATGTACGGT
GAACTATTGCGGCGCGTTGAGGTGCTGCGTCTGCTGCTCCTAGTCCATTT
GAACCTGCCTNCCGCACGCCAGTCACCCGCCCACATCAAGCTGATCGAGT
ACTACTACAAC
BO06309.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-PA | 1038 | CG8134-RA | 1..795 | 17..811 | 3956 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-RB | 1496 | CG8134-RB | 103..898 | 16..811 | 3969 | 99.9 | Plus |
| CG8134-RA | 1421 | CG8134-RA | 103..898 | 16..811 | 3969 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15704593..15705208 | 196..811 | 3069 | 99.8 | Plus |
| X | 23542271 | X | 15704227..15704406 | 16..195 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:03:21 has no hits.
BO06309.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:56 Download gff for
BO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-PA | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:17 Download gff for
BO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-PA | 1..795 | 17..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:26 Download gff for
BO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 99..898 | 11..811 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:42:39 Download gff for
BO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 99..898 | 11..811 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:42:39 Download gff for
BO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15704223..15704406 | 11..195 | 98 | -> | Plus |
| X | 15704593..15705208 | 196..811 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:26 Download gff for
BO06309.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15598256..15598439 | 11..195 | 98 | -> | Plus |
| arm_X | 15598626..15599241 | 196..811 | 99 | | Plus |
BO06309.complete Sequence
1069 bp (1069 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630339
> BO06309.complete
GAAGTTATCAGTCGACATGGATAAACTCCGCGGCGGCAGTCTGGGCGGCG
GCGGATCCTCCAGCGGCGCGCCATCGACGGCTCCGGGCCATGAGCACCAC
CAACTGGAGCAGTATCAGTACCCCAAAAACCTGATCGAGCAATATCTAAG
GGCCTCCAGCAAGATCAAGAAGTTCGAGCGGGCCGGCTTCTTCAAACGCT
TTGCGCCCAGCGTGGTCGATGTGCAGGCGGACTTCCAGCGACTGGCCTAC
AGCTTCGAGGAGTCGGGCATACAGCAGTATGCGGCCATGTGCCACATTGG
CTATGCCAAGTGCGAGTCCTACGGCGGCGCACCGCAGCGCGAATCGGAGG
CCTATCTGCGGGCAGCTAGATCCTTCCTAGCGGCGCACAACGAGTCCGGG
CGACTGCATCTGCGCACCCGCCACTCGGGATTTCGGGAGGGAGCGGTGCA
CTGCTATCACCGTGCGGCGGATCGAGCGGTGGACGGTTGCGTCTTCAAGG
CGGCCATTCTGCGCGAGTTGAAGCAGCTGCAGCGGCAGCTGGACAGCACC
AGCAGCTTTGCCTCGCCCACCCATCAGATCCATGACCTGGAAATCAGCGC
CGAAACGAGTGGCCAGCGCGGCGATTTTCGCAGTGCACTGCAGCATTACG
ACGACATTGTGGACAATGTTTACGAGCGACGCGGTGCTCGCATGTACGGT
GAACTATTGCGGCGCGTTGAGGTGCTGCGTCTGCTGCTCCTAGTCCATTT
GAACCTGCCTCCCGCACGCCAGTCACCCGCCCACATCAAGCTGATCGAGT
ACTACTACAACCTGGCGCAGTTCGAGTCGCTCCCCTGTTCGGCGGACGAC
GGTGGATCCGCGGAGCGTCCGGGAGCATTTGTGCCCGAACAGCAGCAGTA
TGCGCTGGCGGAGATTACGTGCGCCTGGGTGGAGCGTAAAATGTGCGATC
TAAAGCACCTGCTGCGCGACTTTGGAGCCGAATTTGGATCGCTGAGCGAC
ATGGAAAGGCAGCTGCTGGCGGTGATGCATGCAGAACTGGCCCGAAGCTA
CGCAAGCTTTCTAGACCAT
BO06309.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:16:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-RB | 1038 | CG8134-PB | 1..1035 | 17..1051 | 5175 | 100 | Plus |
| CG8134-RA | 1038 | CG8134-PA | 1..1035 | 17..1051 | 5175 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:16:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-RB | 1496 | CG8134-RB | 103..1138 | 16..1051 | 5180 | 100 | Plus |
| CG8134-RA | 1421 | CG8134-RA | 103..1138 | 16..1051 | 5180 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:16:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15704593..15705448 | 196..1051 | 4280 | 100 | Plus |
| X | 23542271 | X | 15704227..15704406 | 16..195 | 900 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:16:50 has no hits.
BO06309.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:41 Download gff for
BO06309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 1..1038 | 17..1052 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:04 Download gff for
BO06309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 99..1145 | 11..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 17:38:43 Download gff for
BO06309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 104..1138 | 17..1053 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:41 Download gff for
BO06309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 99..1145 | 11..1060 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 15:07:34 Download gff for
BO06309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8134-RA | 104..1138 | 17..1053 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 15:07:34 Download gff for
BO06309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15704228..15704406 | 17..195 | 100 | -> | Plus |
| X | 15704593..15705448 | 196..1053 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 17:38:43 Download gff for
BO06309.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15598261..15598439 | 17..195 | 100 | -> | Plus |
| arm_X | 15598626..15599481 | 196..1053 | 99 | | Plus |
BO06309.pep Sequence
Translation from 16 to 1069
> BO06309.pep
MDKLRGGSLGGGGSSSGAPSTAPGHEHHQLEQYQYPKNLIEQYLRASSKI
KKFERAGFFKRFAPSVVDVQADFQRLAYSFEESGIQQYAAMCHIGYAKCE
SYGGAPQRESEAYLRAARSFLAAHNESGRLHLRTRHSGFREGAVHCYHRA
ADRAVDGCVFKAAILRELKQLQRQLDSTSSFASPTHQIHDLEISAETSGQ
RGDFRSALQHYDDIVDNVYERRGARMYGELLRRVEVLRLLLLVHLNLPPA
RQSPAHIKLIEYYYNLAQFESLPCSADDGGSAERPGAFVPEQQQYALAEI
TCAWVERKMCDLKHLLRDFGAEFGSLSDMERQLLAVMHAELARSYASFLD
H
BO06309.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8134-PB | 345 | CG8134-PB | 1..345 | 1..345 | 1798 | 100 | Plus |
| CG8134-PA | 345 | CG8134-PA | 1..345 | 1..345 | 1798 | 100 | Plus |
