Clone Sequence Records
BO06310.3prime Sequence
812 bp (780 high quality bases) assembled on 2005-12-03
> BO06310.3prime
ATGGTCTAGAAAGCTTGCGGCGCGCGGTTTCAGGCCAAGATGAACGCCGT
TGGCCGACCGCAGGACGATGTTCATCGAGTGGCGGGGCTCAGGACCCAAG
GGCAGCAGCTCGAAGTGCCGGAGCAGCTTGCTGACGGTGCTCTTCATTTC
CAGCATGGCAAACTTCTGGCCGATACAGTTTCTTGGTCCAGCGGAGAAAG
GAATGTACGCATACGGATGAATCTGCGGGACATCCGCATCGAATCTTTCA
GGTCGGAACTCATCGGGAGACTCGAAGTACTCAGGATCACGAAGAAGAAC
AAAGATGCCCATCGTAAAGTTGGTGCCTGCTGGAATATGCTTGCCACGTA
TTTCCACATCCTCGGCGAACCAGCGACCGATCATGGGCACTGGCGGGTGC
AGGCGCAGCGACTCCTTAATTACGTTCTCCATAAACTTCAGCTCACCAAG
ATCACGAAGGGTAACTGGGCTCTTTCGATCCTCGCCGAGGACGTCGCGGA
TCTCCTGCTGCAGACGCTGTTGGACCTCCGGATGCCTTGAGATTTCATAT
AAACAGAATGAAATCGCCGAGGTAGTCGTGTCATGGCCCTCGAACATAAA
CGTGTCAACCTCTTCGCGGATATCCTCATCGCTCAACGGGGCGCCATCGA
TTGTGGACTGCAGCAGCACATCCAGCAGAGCCATCCGTCGCTTTTGGCCC
AAGAAATTAACTTCCTCTTCTGGGGTTGTTTCCTTCGAGTTGTTAACCAG
CGTTTCACGCCGCTCACGGATAATGTTCTCGGTAAAGTCGTGCATTACCT
TGATAGCTTTGT
BO06310.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3466-PA | 1506 | Cyp4d2-RA | 710..1503 | 812..19 | 3970 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:54:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4d2-RB | 2467 | CG3466-RB | 1611..2404 | 812..19 | 3970 | 100 | Minus |
Cyp4d2-RA | 1582 | CG3466-RA | 726..1519 | 812..19 | 3970 | 100 | Minus |
Cyp4d14-RB | 1694 | CG3540-RB | 921..1051 | 701..571 | 355 | 84.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:54:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2177816..2178282 | 812..346 | 2335 | 100 | Minus |
X | 23542271 | X | 2178337..2178665 | 347..19 | 1645 | 100 | Minus |
X | 23542271 | X | 2174058..2174188 | 571..701 | 355 | 84.7 | Plus |
X | 23542271 | X | 2159320..2159429 | 109..218 | 235 | 80.9 | Plus |
X | 23542271 | X | 2173585..2173686 | 101..202 | 210 | 80.4 | Plus |
Blast to na_te.dros performed on 2015-02-04 19:54:39 has no hits.
BO06310.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:57 Download gff for
BO06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3466-PA | 710..1506 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:19 Download gff for
BO06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3466-PA | 710..1506 | 15..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:30 Download gff for
BO06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4d2-RA | 726..1523 | 14..812 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:44:56 Download gff for
BO06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4d2-RA | 726..1523 | 14..812 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:44:56 Download gff for
BO06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2177816..2178280 | 348..812 | 100 | -> | Minus |
X | 2178337..2178669 | 14..347 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:30 Download gff for
BO06310.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2071849..2072313 | 348..812 | 100 | -> | Minus |
arm_X | 2072370..2072702 | 14..347 | 99 | | Minus |
BO06310.5prime Sequence
941 bp (803 high quality bases) assembled on 2005-12-03
> BO06310.5prime
GAAGTTATCAGTCGACATGCTGGGTGTTGTTGGGGTGCTCCTCCTGGTGG
CGTTCGCCACACTGCTGCTGTGGGATTTCCTCTGGCGCAGGCGGGGCAAT
GGTATATTGCCGGGTCCGCGGCCACTTCCCTTCCTGGGCAACCTGCTCAT
GTATCGCGGTCTAGATCCTGAACAAATAATGGACTTTGTCAAGAAGAACC
AGCGCAAGTACGGTCGCCTTTACAGGGTGTGGATTCTCCACCAGTTGGCC
GTCTTCTCCACGGATCCCCGAGACATTGAGTTCGTCTTGAGCAGCCAACA
GCATATAACCAAGAATAATCTGTACAAGCTACTTAACTGCTGGCTGGGCG
ATGGATTGCTGATGAGCACGGGCAGGAAGTGGCATGGACGCAGAAAGATC
ATCACGCCCACCTTCCACTTCAAGATTTTGGAACAGTTCGTCGAGATATT
CGACCAACAAAGCGCCGTAATGGTGGAGCAGCTTCAGTCGCGCGCCGACG
GCATGACTCCCATTAACATCTTTCCGGTGATTTGTCTCACTGCCCTGGAT
ATAATCGCAGAAACTGCAATGGGCACAAAAATCAATGCCCAAAAAAATCC
CAATCTGCCCTATGTCCAGGCTGTCAATGATGTCACCAACATCTTGATTA
AACGTTTTATCCACGCTTGGCAGCGGGTGGACTGGATTTTCCGGCTAACG
CAGCCAACAGAAGCTAAACGCCAGGACAAAGCTATCAAGGTAATGCACGA
CTTTACCGAGAACATTATCCGTGAGCGGCGTGAAACGCTGGTTAACAACT
CGAAGGAAACAACCCCAGAAGAGGAAGTTAATTTCTTGGGCCAAAAGCGA
CGGATGGCTCTGCTGGATGTGCTGCTGCAGTCCACAATCGATGGCGCCCC
GTTGAGCGATGAGGATATCCGCGAAGAGGTTGACACGTTTA
BO06310.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3466-PA | 1506 | Cyp4d2-RA | 1..925 | 17..941 | 4600 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4d2-RB | 2467 | CG3466-RB | 902..1826 | 17..941 | 4610 | 99.9 | Plus |
Cyp4d2-RA | 1582 | CG3466-RA | 17..941 | 17..941 | 4610 | 99.9 | Plus |
Cyp4d14-RB | 1694 | CG3540-RB | 921..1020 | 837..936 | 275 | 85 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2177151..2177537 | 174..560 | 1920 | 99.7 | Plus |
X | 23542271 | X | 2177721..2178031 | 631..941 | 1555 | 100 | Plus |
X | 23542271 | X | 2176907..2177063 | 17..173 | 785 | 100 | Plus |
X | 23542271 | X | 2177592..2177663 | 559..630 | 360 | 100 | Plus |
X | 23542271 | X | 2174089..2174188 | 936..837 | 275 | 85 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:36:56 has no hits.
BO06310.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:58 Download gff for
BO06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3466-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:20 Download gff for
BO06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3466-PA | 1..924 | 17..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:59:47 Download gff for
BO06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4d2-RA | 7..940 | 8..940 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:26 Download gff for
BO06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4d2-RA | 7..940 | 8..940 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:26 Download gff for
BO06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2176897..2177063 | 8..173 | 97 | -> | Plus |
X | 2177151..2177537 | 174..560 | 99 | -> | Plus |
X | 2177594..2177663 | 561..630 | 100 | -> | Plus |
X | 2177721..2178030 | 631..940 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:59:47 Download gff for
BO06310.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2070930..2071096 | 8..173 | 97 | -> | Plus |
arm_X | 2071184..2071570 | 174..560 | 99 | -> | Plus |
arm_X | 2071627..2071696 | 561..630 | 100 | -> | Plus |
arm_X | 2071754..2072063 | 631..940 | 100 | | Plus |
BO06310.complete Sequence
1537 bp (1537 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630340
> BO06310.complete
GAAGTTATCAGTCGACATGCTGGGTGTTGTTGGGGTGCTCCTCCTGGTGG
CGTTCGCCACACTGCTGCTGTGGGATTTCCTCTGGCGCAGGCGGGGCAAT
GGTATATTGCCGGGTCCGCGGCCACTTCCCTTCCTGGGCAACCTGCTCAT
GTATCGCGGTCTAGATCCTGAACAAATAATGGACTTTGTCAAGAAGAACC
AGCGCAAGTACGGTCGCCTTTACAGGGTGTGGATTCTCCACCAGTTGGCC
GTCTTCTCCACGGATCCCCGAGACATTGAGTTCGTCTTGAGCAGCCAACA
GCATATAACCAAGAATAATCTGTACAAGCTACTTAACTGCTGGCTGGGCG
ATGGATTGCTGATGAGCACGGGCAGGAAGTGGCATGGACGCAGAAAGATC
ATCACGCCCACCTTCCACTTCAAGATTTTGGAACAGTTCGTCGAGATATT
CGACCAACAAAGCGCCGTAATGGTGGAGCAGCTTCAGTCGCGCGCCGACG
GCATGACTCCCATTAACATCTTTCCGGTGATTTGTCTCACTGCCCTGGAT
ATAATCGCAGAAACTGCAATGGGCACAAAAATCAATGCCCAAAAAAATCC
CAATCTGCCCTATGTCCAGGCTGTCAATGATGTCACCAACATCTTGATTA
AACGTTTTATCCACGCTTGGCAGCGGGTGGACTGGATTTTCCGGCTAACG
CAGCCAACAGAAGCTAAACGCCAGGACAAAGCTATCAAGGTAATGCACGA
CTTTACCGAGAACATTATCCGTGAGCGGCGTGAAACGCTGGTTAACAACT
CGAAGGAAACAACCCCAGAAGAGGAAGTTAATTTCTTGGGCCAAAAGCGA
CGGATGGCTCTGCTGGATGTGCTGCTGCAGTCCACAATCGATGGCGCCCC
GTTGAGCGATGAGGATATCCGCGAAGAGGTTGACACGTTTATGTTCGAGG
GCCATGACACGACTACCTCGGCGATTTCATTCTGTTTATATGAAATCTCA
AGGCATCCGGAGGTCCAACAGCGTCTGCAGCAGGAGATCCGCGACGTCCT
CGGCGAGGATCGAAAGAGCCCAGTTACCCTTCGTGATCTTGGTGAGCTGA
AGTTTATGGAGAACGTAATTAAGGAGTCGCTGCGCCTGCACCCGCCAGTG
CCCATGATCGGTCGCTGGTTCGCCGAGGATGTGGAAATACGTGGCAAGCA
TATTCCAGCAGGCACCAACTTTACGATGGGCATCTTTGTTCTTCTTCGTG
ATCCTGAGTACTTCGAGTCTCCCGATGAGTTCCGACCTGAAAGATTCGAT
GCGGATGTCCCGCAGATTCATCCGTATGCGTACATTCCTTTCTCCGCTGG
ACCAAGAAACTGTATCGGCCAGAAGTTTGCCATGCTGGAAATGAAGAGCA
CCGTCAGCAAGCTGCTCCGGCACTTCGAGCTGCTGCCCTTGGGTCCTGAG
CCCCGCCACTCGATGAACATCGTCCTGCGGTCGGCCAACGGCGTTCATCT
TGGCCTGAAACCGCGCGCCGCAAGCTTTCTAGACCAT
BO06310.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4d2-RB | 1506 | CG3466-PB | 1..1503 | 17..1519 | 7500 | 99.9 | Plus |
Cyp4d2-RA | 1506 | CG3466-PA | 1..1503 | 17..1519 | 7500 | 99.9 | Plus |
Cyp4d14-RB | 1533 | CG3540-PB | 842..972 | 837..967 | 355 | 84.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4d2-RB | 2467 | CG3466-RB | 902..2404 | 17..1519 | 7500 | 99.9 | Plus |
Cyp4d2-RA | 1582 | CG3466-RA | 17..1519 | 17..1519 | 7500 | 99.9 | Plus |
Cyp4d14-RB | 1694 | CG3540-RB | 921..1051 | 837..967 | 355 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2177721..2178282 | 631..1192 | 2810 | 100 | Plus |
X | 23542271 | X | 2177151..2177537 | 174..560 | 1920 | 99.7 | Plus |
X | 23542271 | X | 2178337..2178665 | 1191..1519 | 1645 | 100 | Plus |
X | 23542271 | X | 2176907..2177063 | 17..173 | 785 | 100 | Plus |
X | 23542271 | X | 2177592..2177663 | 559..630 | 360 | 100 | Plus |
X | 23542271 | X | 2174058..2174188 | 967..837 | 355 | 84.7 | Minus |
X | 23542271 | X | 2159320..2159429 | 1429..1320 | 235 | 80.9 | Minus |
X | 23542271 | X | 2173585..2173686 | 1437..1336 | 210 | 80.4 | Minus |
Blast to na_te.dros performed on 2014-11-27 20:51:43 has no hits.
BO06310.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:42 Download gff for
BO06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4d2-RA | 1..1506 | 17..1523 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:06 Download gff for
BO06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4d2-RA | 7..1523 | 8..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:54 Download gff for
BO06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4d2-RA | 17..1519 | 17..1521 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:43 Download gff for
BO06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4d2-RA | 7..1523 | 8..1524 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:48 Download gff for
BO06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Cyp4d2-RA | 17..1519 | 17..1521 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:48 Download gff for
BO06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2176907..2177063 | 17..173 | 100 | -> | Plus |
X | 2177151..2177537 | 174..560 | 99 | -> | Plus |
X | 2177594..2177663 | 561..630 | 100 | -> | Plus |
X | 2177721..2178280 | 631..1190 | 100 | -> | Plus |
X | 2178337..2178665 | 1191..1521 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:54 Download gff for
BO06310.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 2070940..2071096 | 17..173 | 100 | -> | Plus |
arm_X | 2071184..2071570 | 174..560 | 99 | -> | Plus |
arm_X | 2071627..2071696 | 561..630 | 100 | -> | Plus |
arm_X | 2071754..2072313 | 631..1190 | 100 | -> | Plus |
arm_X | 2072370..2072698 | 1191..1521 | 99 | | Plus |
BO06310.pep Sequence
Translation from 16 to 1537
> BO06310.pep
MLGVVGVLLLVAFATLLLWDFLWRRRGNGILPGPRPLPFLGNLLMYRGLD
PEQIMDFVKKNQRKYGRLYRVWILHQLAVFSTDPRDIEFVLSSQQHITKN
NLYKLLNCWLGDGLLMSTGRKWHGRRKIITPTFHFKILEQFVEIFDQQSA
VMVEQLQSRADGMTPINIFPVICLTALDIIAETAMGTKINAQKNPNLPYV
QAVNDVTNILIKRFIHAWQRVDWIFRLTQPTEAKRQDKAIKVMHDFTENI
IRERRETLVNNSKETTPEEEVNFLGQKRRMALLDVLLQSTIDGAPLSDED
IREEVDTFMFEGHDTTTSAISFCLYEISRHPEVQQRLQQEIRDVLGEDRK
SPVTLRDLGELKFMENVIKESLRLHPPVPMIGRWFAEDVEIRGKHIPAGT
NFTMGIFVLLRDPEYFESPDEFRPERFDADVPQIHPYAYIPFSAGPRNCI
GQKFAMLEMKSTVSKLLRHFELLPLGPEPRHSMNIVLRSANGVHLGLKPR
AASFLDH
BO06310.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Cyp4d2-PB | 501 | CG3466-PB | 1..501 | 1..501 | 2626 | 100 | Plus |
Cyp4d2-PA | 501 | CG3466-PA | 1..501 | 1..501 | 2626 | 100 | Plus |
Cyp4d14-PA | 507 | CG3540-PA | 5..505 | 8..500 | 1364 | 54.3 | Plus |
Cyp4d14-PB | 510 | CG3540-PB | 5..508 | 8..500 | 1351 | 54 | Plus |
Cyp4d8-PA | 463 | CG4321-PA | 3..460 | 44..500 | 1199 | 53.2 | Plus |