Clone BO06310 Report

Search the DGRC for BO06310

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:10
Vector:pDNR-Dual
Associated Gene/TranscriptCyp4d2-RA
Protein status:BO06310.pep: validated full length
Sequenced Size:1537

Clone Sequence Records

BO06310.3prime Sequence

812 bp (780 high quality bases) assembled on 2005-12-03

> BO06310.3prime
ATGGTCTAGAAAGCTTGCGGCGCGCGGTTTCAGGCCAAGATGAACGCCGT
TGGCCGACCGCAGGACGATGTTCATCGAGTGGCGGGGCTCAGGACCCAAG
GGCAGCAGCTCGAAGTGCCGGAGCAGCTTGCTGACGGTGCTCTTCATTTC
CAGCATGGCAAACTTCTGGCCGATACAGTTTCTTGGTCCAGCGGAGAAAG
GAATGTACGCATACGGATGAATCTGCGGGACATCCGCATCGAATCTTTCA
GGTCGGAACTCATCGGGAGACTCGAAGTACTCAGGATCACGAAGAAGAAC
AAAGATGCCCATCGTAAAGTTGGTGCCTGCTGGAATATGCTTGCCACGTA
TTTCCACATCCTCGGCGAACCAGCGACCGATCATGGGCACTGGCGGGTGC
AGGCGCAGCGACTCCTTAATTACGTTCTCCATAAACTTCAGCTCACCAAG
ATCACGAAGGGTAACTGGGCTCTTTCGATCCTCGCCGAGGACGTCGCGGA
TCTCCTGCTGCAGACGCTGTTGGACCTCCGGATGCCTTGAGATTTCATAT
AAACAGAATGAAATCGCCGAGGTAGTCGTGTCATGGCCCTCGAACATAAA
CGTGTCAACCTCTTCGCGGATATCCTCATCGCTCAACGGGGCGCCATCGA
TTGTGGACTGCAGCAGCACATCCAGCAGAGCCATCCGTCGCTTTTGGCCC
AAGAAATTAACTTCCTCTTCTGGGGTTGTTTCCTTCGAGTTGTTAACCAG
CGTTTCACGCCGCTCACGGATAATGTTCTCGGTAAAGTCGTGCATTACCT
TGATAGCTTTGT

BO06310.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:38:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3466-PA 1506 Cyp4d2-RA 710..1503 812..19 3970 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:54:43
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4d2-RB 2467 CG3466-RB 1611..2404 812..19 3970 100 Minus
Cyp4d2-RA 1582 CG3466-RA 726..1519 812..19 3970 100 Minus
Cyp4d14-RB 1694 CG3540-RB 921..1051 701..571 355 84.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:54:36
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2177816..2178282 812..346 2335 100 Minus
X 23542271 X 2178337..2178665 347..19 1645 100 Minus
X 23542271 X 2174058..2174188 571..701 355 84.7 Plus
X 23542271 X 2159320..2159429 109..218 235 80.9 Plus
X 23542271 X 2173585..2173686 101..202 210 80.4 Plus
Blast to na_te.dros performed on 2015-02-04 19:54:39 has no hits.

BO06310.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:57 Download gff for BO06310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3466-PA 710..1506 15..812 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:19 Download gff for BO06310.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3466-PA 710..1506 15..812 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:30 Download gff for BO06310.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4d2-RA 726..1523 14..812 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:44:56 Download gff for BO06310.3prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4d2-RA 726..1523 14..812 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:44:56 Download gff for BO06310.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2177816..2178280 348..812 100 -> Minus
X 2178337..2178669 14..347 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:30 Download gff for BO06310.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2071849..2072313 348..812 100 -> Minus
arm_X 2072370..2072702 14..347 99   Minus

BO06310.5prime Sequence

941 bp (803 high quality bases) assembled on 2005-12-03

> BO06310.5prime
GAAGTTATCAGTCGACATGCTGGGTGTTGTTGGGGTGCTCCTCCTGGTGG
CGTTCGCCACACTGCTGCTGTGGGATTTCCTCTGGCGCAGGCGGGGCAAT
GGTATATTGCCGGGTCCGCGGCCACTTCCCTTCCTGGGCAACCTGCTCAT
GTATCGCGGTCTAGATCCTGAACAAATAATGGACTTTGTCAAGAAGAACC
AGCGCAAGTACGGTCGCCTTTACAGGGTGTGGATTCTCCACCAGTTGGCC
GTCTTCTCCACGGATCCCCGAGACATTGAGTTCGTCTTGAGCAGCCAACA
GCATATAACCAAGAATAATCTGTACAAGCTACTTAACTGCTGGCTGGGCG
ATGGATTGCTGATGAGCACGGGCAGGAAGTGGCATGGACGCAGAAAGATC
ATCACGCCCACCTTCCACTTCAAGATTTTGGAACAGTTCGTCGAGATATT
CGACCAACAAAGCGCCGTAATGGTGGAGCAGCTTCAGTCGCGCGCCGACG
GCATGACTCCCATTAACATCTTTCCGGTGATTTGTCTCACTGCCCTGGAT
ATAATCGCAGAAACTGCAATGGGCACAAAAATCAATGCCCAAAAAAATCC
CAATCTGCCCTATGTCCAGGCTGTCAATGATGTCACCAACATCTTGATTA
AACGTTTTATCCACGCTTGGCAGCGGGTGGACTGGATTTTCCGGCTAACG
CAGCCAACAGAAGCTAAACGCCAGGACAAAGCTATCAAGGTAATGCACGA
CTTTACCGAGAACATTATCCGTGAGCGGCGTGAAACGCTGGTTAACAACT
CGAAGGAAACAACCCCAGAAGAGGAAGTTAATTTCTTGGGCCAAAAGCGA
CGGATGGCTCTGCTGGATGTGCTGCTGCAGTCCACAATCGATGGCGCCCC
GTTGAGCGATGAGGATATCCGCGAAGAGGTTGACACGTTTA

BO06310.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG3466-PA 1506 Cyp4d2-RA 1..925 17..941 4600 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:37:00
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4d2-RB 2467 CG3466-RB 902..1826 17..941 4610 99.9 Plus
Cyp4d2-RA 1582 CG3466-RA 17..941 17..941 4610 99.9 Plus
Cyp4d14-RB 1694 CG3540-RB 921..1020 837..936 275 85 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:36:52
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2177151..2177537 174..560 1920 99.7 Plus
X 23542271 X 2177721..2178031 631..941 1555 100 Plus
X 23542271 X 2176907..2177063 17..173 785 100 Plus
X 23542271 X 2177592..2177663 559..630 360 100 Plus
X 23542271 X 2174089..2174188 936..837 275 85 Minus
Blast to na_te.dros performed on 2015-02-10 15:36:56 has no hits.

BO06310.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:45:58 Download gff for BO06310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3466-PA 1..924 17..940 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:20 Download gff for BO06310.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3466-PA 1..924 17..940 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:59:47 Download gff for BO06310.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4d2-RA 7..940 8..940 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:26 Download gff for BO06310.5prime
Subject Subject Range Query Range Percent Splice Strand
Cyp4d2-RA 7..940 8..940 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:26 Download gff for BO06310.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2176897..2177063 8..173 97 -> Plus
X 2177151..2177537 174..560 99 -> Plus
X 2177594..2177663 561..630 100 -> Plus
X 2177721..2178030 631..940 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:59:47 Download gff for BO06310.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 2070930..2071096 8..173 97 -> Plus
arm_X 2071184..2071570 174..560 99 -> Plus
arm_X 2071627..2071696 561..630 100 -> Plus
arm_X 2071754..2072063 631..940 100   Plus

BO06310.complete Sequence

1537 bp (1537 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630340

> BO06310.complete
GAAGTTATCAGTCGACATGCTGGGTGTTGTTGGGGTGCTCCTCCTGGTGG
CGTTCGCCACACTGCTGCTGTGGGATTTCCTCTGGCGCAGGCGGGGCAAT
GGTATATTGCCGGGTCCGCGGCCACTTCCCTTCCTGGGCAACCTGCTCAT
GTATCGCGGTCTAGATCCTGAACAAATAATGGACTTTGTCAAGAAGAACC
AGCGCAAGTACGGTCGCCTTTACAGGGTGTGGATTCTCCACCAGTTGGCC
GTCTTCTCCACGGATCCCCGAGACATTGAGTTCGTCTTGAGCAGCCAACA
GCATATAACCAAGAATAATCTGTACAAGCTACTTAACTGCTGGCTGGGCG
ATGGATTGCTGATGAGCACGGGCAGGAAGTGGCATGGACGCAGAAAGATC
ATCACGCCCACCTTCCACTTCAAGATTTTGGAACAGTTCGTCGAGATATT
CGACCAACAAAGCGCCGTAATGGTGGAGCAGCTTCAGTCGCGCGCCGACG
GCATGACTCCCATTAACATCTTTCCGGTGATTTGTCTCACTGCCCTGGAT
ATAATCGCAGAAACTGCAATGGGCACAAAAATCAATGCCCAAAAAAATCC
CAATCTGCCCTATGTCCAGGCTGTCAATGATGTCACCAACATCTTGATTA
AACGTTTTATCCACGCTTGGCAGCGGGTGGACTGGATTTTCCGGCTAACG
CAGCCAACAGAAGCTAAACGCCAGGACAAAGCTATCAAGGTAATGCACGA
CTTTACCGAGAACATTATCCGTGAGCGGCGTGAAACGCTGGTTAACAACT
CGAAGGAAACAACCCCAGAAGAGGAAGTTAATTTCTTGGGCCAAAAGCGA
CGGATGGCTCTGCTGGATGTGCTGCTGCAGTCCACAATCGATGGCGCCCC
GTTGAGCGATGAGGATATCCGCGAAGAGGTTGACACGTTTATGTTCGAGG
GCCATGACACGACTACCTCGGCGATTTCATTCTGTTTATATGAAATCTCA
AGGCATCCGGAGGTCCAACAGCGTCTGCAGCAGGAGATCCGCGACGTCCT
CGGCGAGGATCGAAAGAGCCCAGTTACCCTTCGTGATCTTGGTGAGCTGA
AGTTTATGGAGAACGTAATTAAGGAGTCGCTGCGCCTGCACCCGCCAGTG
CCCATGATCGGTCGCTGGTTCGCCGAGGATGTGGAAATACGTGGCAAGCA
TATTCCAGCAGGCACCAACTTTACGATGGGCATCTTTGTTCTTCTTCGTG
ATCCTGAGTACTTCGAGTCTCCCGATGAGTTCCGACCTGAAAGATTCGAT
GCGGATGTCCCGCAGATTCATCCGTATGCGTACATTCCTTTCTCCGCTGG
ACCAAGAAACTGTATCGGCCAGAAGTTTGCCATGCTGGAAATGAAGAGCA
CCGTCAGCAAGCTGCTCCGGCACTTCGAGCTGCTGCCCTTGGGTCCTGAG
CCCCGCCACTCGATGAACATCGTCCTGCGGTCGGCCAACGGCGTTCATCT
TGGCCTGAAACCGCGCGCCGCAAGCTTTCTAGACCAT

BO06310.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 20:51:44
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4d2-RB 1506 CG3466-PB 1..1503 17..1519 7500 99.9 Plus
Cyp4d2-RA 1506 CG3466-PA 1..1503 17..1519 7500 99.9 Plus
Cyp4d14-RB 1533 CG3540-PB 842..972 837..967 355 84.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 20:51:46
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4d2-RB 2467 CG3466-RB 902..2404 17..1519 7500 99.9 Plus
Cyp4d2-RA 1582 CG3466-RA 17..1519 17..1519 7500 99.9 Plus
Cyp4d14-RB 1694 CG3540-RB 921..1051 837..967 355 84.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 20:51:41
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2177721..2178282 631..1192 2810 100 Plus
X 23542271 X 2177151..2177537 174..560 1920 99.7 Plus
X 23542271 X 2178337..2178665 1191..1519 1645 100 Plus
X 23542271 X 2176907..2177063 17..173 785 100 Plus
X 23542271 X 2177592..2177663 559..630 360 100 Plus
X 23542271 X 2174058..2174188 967..837 355 84.7 Minus
X 23542271 X 2159320..2159429 1429..1320 235 80.9 Minus
X 23542271 X 2173585..2173686 1437..1336 210 80.4 Minus
Blast to na_te.dros performed on 2014-11-27 20:51:43 has no hits.

BO06310.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:42 Download gff for BO06310.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4d2-RA 1..1506 17..1523 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:06 Download gff for BO06310.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4d2-RA 7..1523 8..1524 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:14:54 Download gff for BO06310.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4d2-RA 17..1519 17..1521 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:43 Download gff for BO06310.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4d2-RA 7..1523 8..1524 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 21:29:48 Download gff for BO06310.complete
Subject Subject Range Query Range Percent Splice Strand
Cyp4d2-RA 17..1519 17..1521 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 21:29:48 Download gff for BO06310.complete
Subject Subject Range Query Range Percent Splice Strand
X 2176907..2177063 17..173 100 -> Plus
X 2177151..2177537 174..560 99 -> Plus
X 2177594..2177663 561..630 100 -> Plus
X 2177721..2178280 631..1190 100 -> Plus
X 2178337..2178665 1191..1521 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:14:54 Download gff for BO06310.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 2070940..2071096 17..173 100 -> Plus
arm_X 2071184..2071570 174..560 99 -> Plus
arm_X 2071627..2071696 561..630 100 -> Plus
arm_X 2071754..2072313 631..1190 100 -> Plus
arm_X 2072370..2072698 1191..1521 99   Plus

BO06310.pep Sequence

Translation from 16 to 1537

> BO06310.pep
MLGVVGVLLLVAFATLLLWDFLWRRRGNGILPGPRPLPFLGNLLMYRGLD
PEQIMDFVKKNQRKYGRLYRVWILHQLAVFSTDPRDIEFVLSSQQHITKN
NLYKLLNCWLGDGLLMSTGRKWHGRRKIITPTFHFKILEQFVEIFDQQSA
VMVEQLQSRADGMTPINIFPVICLTALDIIAETAMGTKINAQKNPNLPYV
QAVNDVTNILIKRFIHAWQRVDWIFRLTQPTEAKRQDKAIKVMHDFTENI
IRERRETLVNNSKETTPEEEVNFLGQKRRMALLDVLLQSTIDGAPLSDED
IREEVDTFMFEGHDTTTSAISFCLYEISRHPEVQQRLQQEIRDVLGEDRK
SPVTLRDLGELKFMENVIKESLRLHPPVPMIGRWFAEDVEIRGKHIPAGT
NFTMGIFVLLRDPEYFESPDEFRPERFDADVPQIHPYAYIPFSAGPRNCI
GQKFAMLEMKSTVSKLLRHFELLPLGPEPRHSMNIVLRSANGVHLGLKPR
AASFLDH

BO06310.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:33
Subject Length Description Subject Range Query Range Score Percent Strand
Cyp4d2-PB 501 CG3466-PB 1..501 1..501 2626 100 Plus
Cyp4d2-PA 501 CG3466-PA 1..501 1..501 2626 100 Plus
Cyp4d14-PA 507 CG3540-PA 5..505 8..500 1364 54.3 Plus
Cyp4d14-PB 510 CG3540-PB 5..508 8..500 1351 54 Plus
Cyp4d8-PA 463 CG4321-PA 3..460 44..500 1199 53.2 Plus