Clone BO06318 Report

Search the DGRC for BO06318

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:18
Vector:pDNR-Dual
Associated Gene/TranscriptMip-RA
Protein status:BO06318.pep: validated full length
Sequenced Size:667

Clone Sequence Records

BO06318.5prime Sequence

665 bp (664 high quality bases) assembled on 2005-12-03

> BO06318.5prime
GAAGTTATCAGTCGACATGGCTCACACTAAGACGCGGAGAACTTACGGCT
TTCTGATGGTGCTCCTCATCCTGGGCAGCGCTTGCGGTAATTTGGTGGCC
AGTGGTAGTGCTGGCAGTCCACCCTCTAATGAACCAGGAGGCGGAGGCCT
GTCCGAACAGGTGGTACTGGACCAACTTAGCGAGAGCGACCTGTACGGCA
ACAATAAGCGCGCCTGGCAGTCGCTGCAGAGCTCGTGGGGCAAGCGGTCC
TCCAGCGGAGACGTCAGCGATCCGGACATCTACATGACCGGCCACTTTGT
TCCGCTGGTAATCACGGATGGCACGAACACCATCGATTGGGACACCTTCG
AGCGGCTGGCCAGTGGACAATCCGCACAGCAGCAGCAGCAACAGCCGCTC
CAGCAGCAATCGCAATCTGGCGAGGATTTCGATGATCTCGCAGGCGAGCC
GGATGTGGAAAAGCGGGCCTGGAAGAGCATGAACGTCGCTTGGGGAAAGA
GGAGGCAGGCGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGGGTAAGCGC
GAACCCACATGGAACAACCTGAAGGGCATGTGGGGCAAACGCGACCAGTG
GCAGAAGCTCCACGGCGGCTGGGGCAAGCGCTCCCAGTTGCCCAGCAACG
CAAGCTTTCTAGACC

BO06318.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:10
Subject Length Description Subject Range Query Range Score Percent Strand
CG6456-PA 636 Mip-RA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:39:47
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-RA 1396 CG6456-RA 290..922 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:39:39
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17345421..17346053 649..17 3165 100 Minus
Blast to na_te.dros performed 2015-02-11 22:39:43
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6762 331..408 131 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2383 367..408 128 83.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6826 376..409 125 85.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6834 376..414 123 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6783 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6772..6804 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6844..6876 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2634..2671 377..414 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6859 376..409 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1585 377..408 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1557..1595 377..415 114 76.9 Plus
roo 9092 roo DM_ROO 9092bp 1081..1119 376..414 114 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2377 376..408 111 81.8 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 977..1009 376..408 111 81.8 Plus
roo 9092 roo DM_ROO 9092bp 1078..1119 367..408 110 79.1 Plus
roo 9092 roo DM_ROO 9092bp 1110..1147 378..415 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..2978 380..415 108 77.8 Plus
roo 9092 roo DM_ROO 9092bp 1106..1162 361..419 108 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2630..2663 376..409 107 79.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6798..6837 370..408 107 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6533..6573 377..417 106 73.2 Plus

BO06318.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:13 Download gff for BO06318.5prime
Subject Subject Range Query Range Percent Splice Strand
Mip-PA 1..636 17..653 99   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:38 Download gff for BO06318.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6456-PA 1..636 17..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:34 Download gff for BO06318.5prime
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 279..928 6..656 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:56 Download gff for BO06318.5prime
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 279..928 6..656 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:56 Download gff for BO06318.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 17345415..17346058 9..656 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:34 Download gff for BO06318.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17338515..17339158 9..656 98   Minus

BO06318.3prime Sequence

665 bp (664 high quality bases) assembled on 2005-12-03

> BO06318.3prime
ATGGTCTAGAAAGCTTGCGTTGCTGGGCAACTGGGAGCGCTTGCCCCAGC
CGCCGTGGAGCTTCTGCCACTGGTCGCGTTTGCCCCACATGCCCTTCAGG
TTGTTCCATGTGGGTTCGCGCTTACCCCAGGCGCCCCTGAACTTGTTCCA
GCCCTGCGCCTGCCTCCTCTTTCCCCAAGCGACGTTCATGCTCTTCCAGG
CCCGCTTTTCCACATCCGGCTCGCCTGCGAGATCATCGAAATCCTCGCCA
GATTGCGATTGCTGCTGGAGCGGCTGTTGCTGCTGCTGCTGTGCGGATTG
TCCACTGGCCAGCCGCTCGAAGGTGTCCCAATCGATGGTGTTCGTGCCAT
CCGTGATTACCAGCGGAACAAAGTGGCCGGTCATGTAGATGTCCGGATCG
CTGACGTCTCCGCTGGAGGACCGCTTGCCCCACGAGCTCTGCAGCGACTG
CCAGGCGCGCTTATTGTTGCCGTACAGGTCGCTCTCGCTAAGTTGGTCCA
GTACCACCTGTTCGGACAGGCCTCCGCCTCCTGGTTCATTAGAGGGTGGA
CTGCCAGCACTACCACTGGCCACCAAATTACCGCAAGCGCTGCCCAGGAT
GAGGAGCACCATCAGAAAGCCGTAAGTTCTCCGCGTCTTAGTGTGAGCCA
TGTCGACTGATAACT

BO06318.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG6456-PA 636 Mip-RA 1..633 651..19 3165 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:54:55
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-RA 1396 CG6456-RA 290..922 651..19 3165 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:54:46
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17345421..17346053 19..651 3165 100 Plus
Blast to na_te.dros performed 2015-02-04 19:54:50
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6762 337..260 131 68.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2383 301..260 128 83.7 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6826 292..259 125 85.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6834 292..254 123 79.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6783 292..260 120 84.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6772..6804 292..260 120 84.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6844..6876 292..260 120 84.8 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2634..2671 291..254 118 78.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6859 292..259 116 82.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1585 291..260 115 84.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1557..1595 291..253 114 76.9 Minus
roo 9092 roo DM_ROO 9092bp 1081..1119 292..254 114 76.9 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2377 292..260 111 81.8 Minus
gypsy11 4428 gypsy11 GYPSY11 4428bp 977..1009 292..260 111 81.8 Minus
roo 9092 roo DM_ROO 9092bp 1078..1119 301..260 110 79.1 Minus
roo 9092 roo DM_ROO 9092bp 1110..1147 290..253 109 76.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..2978 288..253 108 77.8 Minus
roo 9092 roo DM_ROO 9092bp 1106..1162 307..249 108 73.3 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2630..2663 292..259 107 79.4 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6798..6837 298..260 107 77.5 Minus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6533..6573 291..251 106 73.2 Minus

BO06318.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:12 Download gff for BO06318.3prime
Subject Subject Range Query Range Percent Splice Strand
Mip-PA 1..636 15..651 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:37 Download gff for BO06318.3prime
Subject Subject Range Query Range Percent Splice Strand
CG6456-PA 1..636 15..651 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:31 Download gff for BO06318.3prime
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 279..928 12..662 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:03 Download gff for BO06318.3prime
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 279..928 12..662 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:03 Download gff for BO06318.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 17345415..17346058 12..659 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:31 Download gff for BO06318.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17338515..17339158 12..659 98   Plus

BO06318.complete Sequence

667 bp (667 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630343

> BO06318.complete
GAAGTTATCAGTCGACATGGCTCACACTAAGACGCGGAGAACTTACGGCT
TTCTGATGGTGCTCCTCATCCTGGGCAGCGCTTGCGGTAATTTGGTGGCC
AGTGGTAGTGCTGGCAGTCCACCCTCTAATGAACCAGGAGGCGGAGGCCT
GTCCGAACAGGTGGTACTGGACCAACTTAGCGAGAGCGACCTGTACGGCA
ACAATAAGCGCGCCTGGCAGTCGCTGCAGAGCTCGTGGGGCAAGCGGTCC
TCCAGCGGAGACGTCAGCGATCCGGACATCTACATGACCGGCCACTTTGT
TCCGCTGGTAATCACGGATGGCACGAACACCATCGATTGGGACACCTTCG
AGCGGCTGGCCAGTGGACAATCCGCACAGCAGCAGCAGCAACAGCCGCTC
CAGCAGCAATCGCAATCTGGCGAGGATTTCGATGATCTCGCAGGCGAGCC
GGATGTGGAAAAGCGGGCCTGGAAGAGCATGAACGTCGCTTGGGGAAAGA
GGAGGCAGGCGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGGGTAAGCGC
GAACCCACATGGAACAACCTGAAGGGCATGTGGGGCAAACGCGACCAGTG
GCAGAAGCTCCACGGCGGCTGGGGCAAGCGCTCCCAGTTGCCCAGCAACG
CAAGCTTTCTAGACCAT

BO06318.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:19:00
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-RA 636 CG6456-PA 1..633 17..649 3165 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:19:01
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-RA 1396 CG6456-RA 290..922 17..649 3165 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 17345421..17346053 649..17 3165 100 Minus
Blast to na_te.dros performed 2014-11-27 07:18:57
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6680..6762 331..408 131 68.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2342..2383 367..408 128 83.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6793..6826 376..409 125 85.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6796..6834 376..414 123 79.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6751..6783 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6772..6804 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6844..6876 376..408 120 84.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2634..2671 377..414 118 78.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6826..6859 376..409 116 82.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1554..1585 377..408 115 84.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1557..1595 377..415 114 76.9 Plus
roo 9092 roo DM_ROO 9092bp 1081..1119 376..414 114 76.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2345..2377 376..408 111 81.8 Plus
gypsy11 4428 gypsy11 GYPSY11 4428bp 977..1009 376..408 111 81.8 Plus
roo 9092 roo DM_ROO 9092bp 1078..1119 367..408 110 79.1 Plus
roo 9092 roo DM_ROO 9092bp 1110..1147 378..415 109 76.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2943..2978 380..415 108 77.8 Plus
roo 9092 roo DM_ROO 9092bp 1106..1162 361..419 108 73.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2630..2663 376..409 107 79.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6798..6837 370..408 107 77.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6533..6573 377..417 106 73.2 Plus

BO06318.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 22:24:48 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:09 Download gff for BO06318.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 275..924 6..656 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:45 Download gff for BO06318.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 290..922 17..651 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:48 Download gff for BO06318.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 275..924 6..656 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:07 Download gff for BO06318.complete
Subject Subject Range Query Range Percent Splice Strand
Mip-RA 290..922 17..651 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:07 Download gff for BO06318.complete
Subject Subject Range Query Range Percent Splice Strand
3L 17345419..17346053 17..651 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:45 Download gff for BO06318.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 17338519..17339153 17..651 99   Minus

BO06318.pep Sequence

Translation from 16 to 667

> BO06318.pep
MAHTKTRRTYGFLMVLLILGSACGNLVASGSAGSPPSNEPGGGGLSEQVV
LDQLSESDLYGNNKRAWQSLQSSWGKRSSSGDVSDPDIYMTGHFVPLVIT
DGTNTIDWDTFERLASGQSAQQQQQQPLQQQSQSGEDFDDLAGEPDVEKR
AWKSMNVAWGKRRQAQGWNKFRGAWGKREPTWNNLKGMWGKRDQWQKLHG
GWGKRSQLPSNASFLDH

BO06318.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:29
Subject Length Description Subject Range Query Range Score Percent Strand
Mip-PA 211 CG6456-PA 1..211 1..211 1148 100 Plus