Clone Sequence Records
BO06318.5prime Sequence
665 bp (664 high quality bases) assembled on 2005-12-03
> BO06318.5prime
GAAGTTATCAGTCGACATGGCTCACACTAAGACGCGGAGAACTTACGGCT
TTCTGATGGTGCTCCTCATCCTGGGCAGCGCTTGCGGTAATTTGGTGGCC
AGTGGTAGTGCTGGCAGTCCACCCTCTAATGAACCAGGAGGCGGAGGCCT
GTCCGAACAGGTGGTACTGGACCAACTTAGCGAGAGCGACCTGTACGGCA
ACAATAAGCGCGCCTGGCAGTCGCTGCAGAGCTCGTGGGGCAAGCGGTCC
TCCAGCGGAGACGTCAGCGATCCGGACATCTACATGACCGGCCACTTTGT
TCCGCTGGTAATCACGGATGGCACGAACACCATCGATTGGGACACCTTCG
AGCGGCTGGCCAGTGGACAATCCGCACAGCAGCAGCAGCAACAGCCGCTC
CAGCAGCAATCGCAATCTGGCGAGGATTTCGATGATCTCGCAGGCGAGCC
GGATGTGGAAAAGCGGGCCTGGAAGAGCATGAACGTCGCTTGGGGAAAGA
GGAGGCAGGCGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGGGTAAGCGC
GAACCCACATGGAACAACCTGAAGGGCATGTGGGGCAAACGCGACCAGTG
GCAGAAGCTCCACGGCGGCTGGGGCAAGCGCTCCCAGTTGCCCAGCAACG
CAAGCTTTCTAGACC
BO06318.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6456-PA | 636 | Mip-RA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:39:47
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mip-RA | 1396 | CG6456-RA | 290..922 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:39:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17345421..17346053 | 649..17 | 3165 | 100 | Minus |
Blast to na_te.dros performed 2015-02-11 22:39:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6762 | 331..408 | 131 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2383 | 367..408 | 128 | 83.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6826 | 376..409 | 125 | 85.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6834 | 376..414 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6783 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..6804 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6876 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2671 | 377..414 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6859 | 376..409 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 377..408 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1595 | 377..415 | 114 | 76.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1119 | 376..414 | 114 | 76.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2377 | 376..408 | 111 | 81.8 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1009 | 376..408 | 111 | 81.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1078..1119 | 367..408 | 110 | 79.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1147 | 378..415 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2978 | 380..415 | 108 | 77.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1106..1162 | 361..419 | 108 | 73.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2630..2663 | 376..409 | 107 | 79.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6837 | 370..408 | 107 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6573 | 377..417 | 106 | 73.2 | Plus |
BO06318.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:13 Download gff for
BO06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-PA | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:38 Download gff for
BO06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6456-PA | 1..636 | 17..653 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:34 Download gff for
BO06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 279..928 | 6..656 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:19:56 Download gff for
BO06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 279..928 | 6..656 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:19:56 Download gff for
BO06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17345415..17346058 | 9..656 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:34 Download gff for
BO06318.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17338515..17339158 | 9..656 | 98 | | Minus |
BO06318.3prime Sequence
665 bp (664 high quality bases) assembled on 2005-12-03
> BO06318.3prime
ATGGTCTAGAAAGCTTGCGTTGCTGGGCAACTGGGAGCGCTTGCCCCAGC
CGCCGTGGAGCTTCTGCCACTGGTCGCGTTTGCCCCACATGCCCTTCAGG
TTGTTCCATGTGGGTTCGCGCTTACCCCAGGCGCCCCTGAACTTGTTCCA
GCCCTGCGCCTGCCTCCTCTTTCCCCAAGCGACGTTCATGCTCTTCCAGG
CCCGCTTTTCCACATCCGGCTCGCCTGCGAGATCATCGAAATCCTCGCCA
GATTGCGATTGCTGCTGGAGCGGCTGTTGCTGCTGCTGCTGTGCGGATTG
TCCACTGGCCAGCCGCTCGAAGGTGTCCCAATCGATGGTGTTCGTGCCAT
CCGTGATTACCAGCGGAACAAAGTGGCCGGTCATGTAGATGTCCGGATCG
CTGACGTCTCCGCTGGAGGACCGCTTGCCCCACGAGCTCTGCAGCGACTG
CCAGGCGCGCTTATTGTTGCCGTACAGGTCGCTCTCGCTAAGTTGGTCCA
GTACCACCTGTTCGGACAGGCCTCCGCCTCCTGGTTCATTAGAGGGTGGA
CTGCCAGCACTACCACTGGCCACCAAATTACCGCAAGCGCTGCCCAGGAT
GAGGAGCACCATCAGAAAGCCGTAAGTTCTCCGCGTCTTAGTGTGAGCCA
TGTCGACTGATAACT
BO06318.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG6456-PA | 636 | Mip-RA | 1..633 | 651..19 | 3165 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-04 19:54:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mip-RA | 1396 | CG6456-RA | 290..922 | 651..19 | 3165 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-04 19:54:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17345421..17346053 | 19..651 | 3165 | 100 | Plus |
Blast to na_te.dros performed 2015-02-04 19:54:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6762 | 337..260 | 131 | 68.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2383 | 301..260 | 128 | 83.7 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6826 | 292..259 | 125 | 85.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6834 | 292..254 | 123 | 79.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6783 | 292..260 | 120 | 84.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..6804 | 292..260 | 120 | 84.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6876 | 292..260 | 120 | 84.8 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2671 | 291..254 | 118 | 78.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6859 | 292..259 | 116 | 82.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 291..260 | 115 | 84.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1595 | 291..253 | 114 | 76.9 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1119 | 292..254 | 114 | 76.9 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2377 | 292..260 | 111 | 81.8 | Minus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1009 | 292..260 | 111 | 81.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1078..1119 | 301..260 | 110 | 79.1 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1147 | 290..253 | 109 | 76.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2978 | 288..253 | 108 | 77.8 | Minus |
roo | 9092 | roo DM_ROO 9092bp | 1106..1162 | 307..249 | 108 | 73.3 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2630..2663 | 292..259 | 107 | 79.4 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6837 | 298..260 | 107 | 77.5 | Minus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6573 | 291..251 | 106 | 73.2 | Minus |
BO06318.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:12 Download gff for
BO06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-PA | 1..636 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:37 Download gff for
BO06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG6456-PA | 1..636 | 15..651 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-10 21:21:31 Download gff for
BO06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 279..928 | 12..662 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-04 21:45:03 Download gff for
BO06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 279..928 | 12..662 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-04 21:45:03 Download gff for
BO06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17345415..17346058 | 12..659 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-10 21:21:31 Download gff for
BO06318.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17338515..17339158 | 12..659 | 98 | | Plus |
BO06318.complete Sequence
667 bp (667 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630343
> BO06318.complete
GAAGTTATCAGTCGACATGGCTCACACTAAGACGCGGAGAACTTACGGCT
TTCTGATGGTGCTCCTCATCCTGGGCAGCGCTTGCGGTAATTTGGTGGCC
AGTGGTAGTGCTGGCAGTCCACCCTCTAATGAACCAGGAGGCGGAGGCCT
GTCCGAACAGGTGGTACTGGACCAACTTAGCGAGAGCGACCTGTACGGCA
ACAATAAGCGCGCCTGGCAGTCGCTGCAGAGCTCGTGGGGCAAGCGGTCC
TCCAGCGGAGACGTCAGCGATCCGGACATCTACATGACCGGCCACTTTGT
TCCGCTGGTAATCACGGATGGCACGAACACCATCGATTGGGACACCTTCG
AGCGGCTGGCCAGTGGACAATCCGCACAGCAGCAGCAGCAACAGCCGCTC
CAGCAGCAATCGCAATCTGGCGAGGATTTCGATGATCTCGCAGGCGAGCC
GGATGTGGAAAAGCGGGCCTGGAAGAGCATGAACGTCGCTTGGGGAAAGA
GGAGGCAGGCGCAGGGCTGGAACAAGTTCAGGGGCGCCTGGGGTAAGCGC
GAACCCACATGGAACAACCTGAAGGGCATGTGGGGCAAACGCGACCAGTG
GCAGAAGCTCCACGGCGGCTGGGGCAAGCGCTCCCAGTTGCCCAGCAACG
CAAGCTTTCTAGACCAT
BO06318.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:19:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mip-RA | 636 | CG6456-PA | 1..633 | 17..649 | 3165 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:19:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mip-RA | 1396 | CG6456-RA | 290..922 | 17..649 | 3165 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:18:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 17345421..17346053 | 649..17 | 3165 | 100 | Minus |
Blast to na_te.dros performed 2014-11-27 07:18:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6680..6762 | 331..408 | 131 | 68.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2383 | 367..408 | 128 | 83.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6826 | 376..409 | 125 | 85.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6796..6834 | 376..414 | 123 | 79.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6751..6783 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..6804 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6844..6876 | 376..408 | 120 | 84.8 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2634..2671 | 377..414 | 118 | 78.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6826..6859 | 376..409 | 116 | 82.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1554..1585 | 377..408 | 115 | 84.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1557..1595 | 377..415 | 114 | 76.9 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1081..1119 | 376..414 | 114 | 76.9 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2377 | 376..408 | 111 | 81.8 | Plus |
gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 977..1009 | 376..408 | 111 | 81.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1078..1119 | 367..408 | 110 | 79.1 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1110..1147 | 378..415 | 109 | 76.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2943..2978 | 380..415 | 108 | 77.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1106..1162 | 361..419 | 108 | 73.3 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2630..2663 | 376..409 | 107 | 79.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6798..6837 | 370..408 | 107 | 77.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6533..6573 | 377..417 | 106 | 73.2 | Plus |
BO06318.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed on 2008-07-21 22:24:48 has no hits.
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:09 Download gff for
BO06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 275..924 | 6..656 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:11:45 Download gff for
BO06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 290..922 | 17..651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:48 Download gff for
BO06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 275..924 | 6..656 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:08:07 Download gff for
BO06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Mip-RA | 290..922 | 17..651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:08:07 Download gff for
BO06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 17345419..17346053 | 17..651 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:11:45 Download gff for
BO06318.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 17338519..17339153 | 17..651 | 99 | | Minus |
BO06318.pep Sequence
Translation from 16 to 667
> BO06318.pep
MAHTKTRRTYGFLMVLLILGSACGNLVASGSAGSPPSNEPGGGGLSEQVV
LDQLSESDLYGNNKRAWQSLQSSWGKRSSSGDVSDPDIYMTGHFVPLVIT
DGTNTIDWDTFERLASGQSAQQQQQQPLQQQSQSGEDFDDLAGEPDVEKR
AWKSMNVAWGKRRQAQGWNKFRGAWGKREPTWNNLKGMWGKRDQWQKLHG
GWGKRSQLPSNASFLDH
BO06318.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Mip-PA | 211 | CG6456-PA | 1..211 | 1..211 | 1148 | 100 | Plus |