Clone Sequence Records
BO06319.3prime Sequence
945 bp (725 high quality bases) assembled on 2005-12-03
> BO06319.3prime
ATGGTCTAGAAAGCTTGCTGTTCGGTAAAAACGCAAATTCACTGGTGACG
TGTGCCGCTTAAGGTATTGATAAACGAAATTACGGAAAACACGGTTGAAA
TTGCGTATGGAAGGCCAGTGCAGATTGGCGGCATTGTCCCGAGGCGTGTG
CCAGACGTCTGGGAAAGGAGTGGCTACCAAATGCAGCACAGGAACATTCT
CATCTAAAAACGGTCGATGATCATCGTCGACTAGACCACCGCTGACACGA
CTTAAAAACATATTGTTATTGCCCTCCAGCTGGCCGGCAGTGCGCAGAGA
TTTCTCAATCTGCACGAGACTGGAGTGCAGTCCGTCGGTGTTTTCATAAA
AACTGGAGAACTTGGGATTCCGCGCCCCAATTAGATCCAGCAGCACCAGA
ACTTCAATTCGATCTATATTGCGTGGAGCTAGTTGCGCCTGGGAACCACT
GCGTTTGCTAGCCAACTTCGCGGCCAGATGCTTTGATCCGTATACAGAGT
CCGCATCGGTCCACTCCTTAAAGGCCTCCTCGCCATCGAAGAATATGAGC
ATAAGTCCCACATCGCTGCGATTGCGAAACTCTTTCTGCAGATACGCGCC
CAAGGTCTTGGCGGTGTTCAACAGAATGGCACAGGGCACGGCGGAGTCAG
TGGCGCCCACAAAGCCGGGATCATTGGGGAAGTACTTGCTGTCGTAGTGG
CAGGCCAGAGCGAGAAAGTTCTGAGCCTGGGGATTGATTGTGCCCACTAC
GTTGGCAAACGTGAGTTCGCCGAAAACTGGAACTCTCTGCTTGAACTCAT
CCACTTCCGTTTGGAAGCCAAGGCCGTTCAGCGATTGAACCAGGTACTCG
CGCACCTGCTGATGTCCCCGACTGCCAACGACGCGTGGCACCAAAATGGA
GTCCAGGGTGCGGGTGAAATGGACCTCATCGTCGCGCCACTGGGA
BO06319.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32412-PA | 1023 | CG32412-RA | 94..1020 | 945..19 | 4585 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 03:02:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-RA | 1141 | CG32412-RA | 129..1055 | 945..19 | 4605 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 03:02:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5901796..5902104 | 550..858 | 1530 | 99.7 | Plus |
3L | 28110227 | 3L | 5901153..5901360 | 198..405 | 1040 | 100 | Plus |
3L | 28110227 | 3L | 5900921..5901099 | 19..197 | 895 | 100 | Plus |
3L | 28110227 | 3L | 5901416..5901561 | 405..550 | 730 | 100 | Plus |
3L | 28110227 | 3L | 5902157..5902249 | 853..945 | 450 | 98.9 | Plus |
Blast to na_te.dros performed on 2015-02-11 03:02:24 has no hits.
BO06319.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:14 Download gff for
BO06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-PA | 95..1023 | 18..944 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:39 Download gff for
BO06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-PA | 95..1023 | 18..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-22 20:52:34 Download gff for
BO06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 130..1061 | 10..944 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:47:03 Download gff for
BO06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 130..1061 | 10..944 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 05:47:03 Download gff for
BO06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5901153..5901360 | 198..405 | 100 | <- | Plus |
3L | 5901417..5901560 | 406..549 | 100 | <- | Plus |
3L | 5900915..5901099 | 10..197 | 97 | <- | Plus |
3L | 5901796..5902101 | 550..855 | 99 | <- | Plus |
3L | 5902160..5902248 | 856..944 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-22 20:52:34 Download gff for
BO06319.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5894015..5894199 | 10..197 | 97 | <- | Plus |
arm_3L | 5894253..5894460 | 198..405 | 100 | <- | Plus |
arm_3L | 5894517..5894660 | 406..549 | 100 | <- | Plus |
arm_3L | 5894896..5895201 | 550..855 | 99 | <- | Plus |
arm_3L | 5895260..5895348 | 856..944 | 98 | | Plus |
BO06319.5prime Sequence
957 bp (708 high quality bases) assembled on 2005-12-03
> BO06319.5prime
GAAGTTATCAGTCGACATGGCGATCGGTTCCGTAGTTTTTGCCGCCGCAG
GCTTGCTGCTCCTCCTCCTCCCGCCGTCGCATCAGCAAGCGACAGCGGGA
AACATTGGATCCCAGTGGCGCGACGATGAGGTCCATTTCAACCGCACCCT
GGACTCCATTTTGGTGCCACGCGTCGTTGGCAGTCGGGGACATCAGCAGG
TGCGCGAGTACCTGGTCCAATCGCTGAACGGCCTTGGCTTCCAAACGGAA
GTGGATGAGTTCAAGCAGAGAGTTCCAGTTTTCGGCGAACTCACGTTTGC
CAACGTAGTGGGCACAATCAATCCCCAGGCTCAGAACTTTCTCGCTCTGG
CCTGCCACTACGACAGCAAGTACTTCCCCAATGATCCCGGCTTTGTGGGC
GCCACTGACTCCGCCGTGCCCTGTGCCATTCTGTTGAACACCGCCAAGAC
CTTGGGCGCGTATCTGCAGAAAGAGTTTCGCAATCGCAGCGATGTGGGAC
TTATGCTCATATTCTTCGATGGCGAGGAGGCCTTTAAGGAGTGGACCGAT
GCGGACTCTGTATACGGATCAAAGCATCTGGCCGCGAAGTTGGCTAGCAA
ACGCAGTGGTTCCCAGGCGCAACTAGCTCCACGCAATATAGATCGAATTG
AAGTTCTGGTGCTGCTGGATCTAATTGGGGCGCGGAATCCCAAGTTCTCC
AGTTTTTATGAAAACACCGACGGACTGCACTCCAGTCTCGTGCAGATTGA
GAAATCTCTGCGCACTGCCGGCCAGCTGGAGGGCAATAACAATATGTTTT
TTAGTCGTGTCAGCGGTGGTCTAGTCGACGATGATCATCGACCGTTTTTA
GATGAGAATGTTCCTGTGCTGCATTTGGTAACCACTCCTTTCCCAGACGT
CTGGCACACGCCCTCGGACAATGGCGCCAATCTGCACTGGCCTTCCATAC
GCAATTT
BO06319.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG32412-PA | 1023 | CG32412-RA | 1..896 | 17..912 | 4430 | 99.7 | Plus |
CG32412-PA | 1023 | CG32412-RA | 900..941 | 916..957 | 185 | 97.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:41:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-RA | 1141 | CG32412-RA | 36..976 | 17..957 | 4615 | 99.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:41:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5901796..5902104 | 505..197 | 1545 | 100 | Minus |
3L | 28110227 | 3L | 5901153..5901360 | 857..650 | 1025 | 99.5 | Minus |
3L | 28110227 | 3L | 5901416..5901561 | 650..505 | 730 | 100 | Minus |
3L | 28110227 | 3L | 5902157..5902255 | 202..104 | 495 | 100 | Minus |
3L | 28110227 | 3L | 5902335..5902421 | 103..17 | 435 | 100 | Minus |
3L | 28110227 | 3L | 5901000..5901099 | 957..858 | 425 | 95 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:41:11 has no hits.
BO06319.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:15 Download gff for
BO06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-PA | 1..941 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:41 Download gff for
BO06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-PA | 1..941 | 17..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:41 Download gff for
BO06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 30..976 | 11..957 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:51 Download gff for
BO06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 30..976 | 11..957 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:51 Download gff for
BO06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5901153..5901360 | 650..857 | 99 | <- | Minus |
3L | 5901417..5901560 | 506..649 | 100 | <- | Minus |
3L | 5901796..5902101 | 200..505 | 100 | <- | Minus |
3L | 5902160..5902255 | 104..199 | 100 | <- | Minus |
3L | 5901000..5901099 | 858..957 | 96 | <- | Minus |
3L | 5902335..5902427 | 11..103 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:41 Download gff for
BO06319.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5894100..5894199 | 858..957 | 96 | <- | Minus |
arm_3L | 5894253..5894460 | 650..857 | 99 | <- | Minus |
arm_3L | 5894517..5894660 | 506..649 | 100 | <- | Minus |
arm_3L | 5894896..5895201 | 200..505 | 100 | <- | Minus |
arm_3L | 5895260..5895355 | 104..199 | 100 | <- | Minus |
arm_3L | 5895435..5895527 | 11..103 | 96 | | Minus |
BO06319.complete Sequence
1054 bp (1054 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630344
> BO06319.complete
GAAGTTATCAGTCGACATGGCGATCGGTTCCGTAGTTTTTGCCGCCGCAG
GCTTGCTGCTCCTCCTCCTCCCGCCGTCGCATCAGCAAGCGACAGCGGGA
AACATTGGATCCCAGTGGCGCGACGATGAGGTCCATTTCAACCGCACCCT
GGACTCCATTTTGGTGCCACGCGTCGTTGGCAGTCGGGGACATCAGCAGG
TGCGCGAGTACCTGGTCCAATCGCTGAACGGCCTTGGCTTCCAAACGGAA
GTGGATGAGTTCAAGCAGAGAGTTCCAGTTTTCGGCGAACTCACGTTTGC
CAACGTAGTGGGCACAATCAATCCCCAGGCTCAGAACTTTCTCGCTCTGG
CCTGCCACTACGACAGCAAGTACTTCCCCAATGATCCCGGCTTTGTGGGC
GCCACTGACTCCGCCGTGCCCTGTGCCATTCTGTTGAACACCGCCAAGAC
CTTGGGCGCGTATCTGCAGAAAGAGTTTCGCAATCGCAGCGATGTGGGAC
TTATGCTCATATTCTTCGATGGCGAGGAGGCCTTTAAGGAGTGGACCGAT
GCGGACTCTGTATACGGATCAAAGCATCTGGCCGCGAAGTTGGCTAGCAA
ACGCAGTGGTTCCCAGGCGCAACTAGCTCCACGCAATATAGATCGAATTG
AAGTTCTGGTGCTGCTGGATCTAATTGGGGCGCGGAATCCCAAGTTCTCC
AGTTTTTATGAAAACACCGACGGACTGCACTCCAGTCTCGTGCAGATTGA
GAAATCTCTGCGCACTGCCGGCCAGCTGGAGGGCAATAACAATATGTTTT
TAAGTCGTGTCAGCGGTGGTCTAGTCGACGATGATCATCGACCGTTTTTA
GATGAGAATGTTCCTGTGCTGCATTTGGTAGCCACTCCTTTCCCAGACGT
CTGGCACACGCCTCGGGACAATGCCGCCAATCTGCACTGGCCTTCCATAC
GCAATTTCAACCGTGTTTTCCGTAATTTCGTTTATCAATACCTTAAGCGG
CACACGTCACCAGTGAATTTGCGTTTTTACCGAACAGCAAGCTTTCTAGA
CCAT
BO06319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:37:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-RA | 1023 | CG32412-PA | 1..1020 | 17..1036 | 5100 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:37:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-RA | 1141 | CG32412-RA | 36..1055 | 17..1036 | 5100 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:37:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 5901796..5902104 | 505..197 | 1545 | 100 | Minus |
3L | 28110227 | 3L | 5901153..5901360 | 857..650 | 1040 | 100 | Minus |
3L | 28110227 | 3L | 5900921..5901099 | 1036..858 | 895 | 100 | Minus |
3L | 28110227 | 3L | 5901416..5901561 | 650..505 | 730 | 100 | Minus |
3L | 28110227 | 3L | 5902157..5902255 | 202..104 | 495 | 100 | Minus |
3L | 28110227 | 3L | 5902335..5902421 | 103..17 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 13:37:17 has no hits.
BO06319.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:49 Download gff for
BO06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-RA | 1..1023 | 17..1037 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:49:12 Download gff for
BO06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-RA | 22..1053 | 11..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:52:28 Download gff for
BO06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 36..1055 | 17..1038 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:50 Download gff for
BO06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG32412-RA | 22..1053 | 11..1045 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:22:41 Download gff for
BO06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
QC-RA | 36..1055 | 17..1038 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:22:41 Download gff for
BO06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 5902335..5902421 | 17..103 | 100 | | Minus |
3L | 5900919..5901099 | 858..1038 | 98 | <- | Minus |
3L | 5901153..5901360 | 650..857 | 100 | <- | Minus |
3L | 5901417..5901560 | 506..649 | 100 | <- | Minus |
3L | 5901796..5902101 | 200..505 | 100 | <- | Minus |
3L | 5902160..5902255 | 104..199 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:52:28 Download gff for
BO06319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 5894019..5894199 | 858..1038 | 98 | <- | Minus |
arm_3L | 5894253..5894460 | 650..857 | 100 | <- | Minus |
arm_3L | 5894517..5894660 | 506..649 | 100 | <- | Minus |
arm_3L | 5894896..5895201 | 200..505 | 100 | <- | Minus |
arm_3L | 5895260..5895355 | 104..199 | 100 | <- | Minus |
arm_3L | 5895435..5895521 | 17..103 | 100 | | Minus |
BO06319.pep Sequence
Translation from 16 to 1054
> BO06319.pep
MAIGSVVFAAAGLLLLLLPPSHQQATAGNIGSQWRDDEVHFNRTLDSILV
PRVVGSRGHQQVREYLVQSLNGLGFQTEVDEFKQRVPVFGELTFANVVGT
INPQAQNFLALACHYDSKYFPNDPGFVGATDSAVPCAILLNTAKTLGAYL
QKEFRNRSDVGLMLIFFDGEEAFKEWTDADSVYGSKHLAAKLASKRSGSQ
AQLAPRNIDRIEVLVLLDLIGARNPKFSSFYENTDGLHSSLVQIEKSLRT
AGQLEGNNNMFLSRVSGGLVDDDHRPFLDENVPVLHLVATPFPDVWHTPR
DNAANLHWPSIRNFNRVFRNFVYQYLKRHTSPVNLRFYRTASFLDH
BO06319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
QC-PA | 340 | CG32412-PA | 1..340 | 1..340 | 1775 | 100 | Plus |
isoQC-PA | 352 | CG5976-PA | 58..345 | 37..326 | 646 | 43.5 | Plus |
isoQC-PB | 354 | CG5976-PB | 60..347 | 37..326 | 646 | 43.5 | Plus |
CG6168-PC | 342 | CG6168-PC | 59..339 | 37..334 | 549 | 41.8 | Plus |
CG6168-PB | 342 | CG6168-PB | 59..339 | 37..334 | 549 | 41.8 | Plus |