Clone Sequence Records
BO06322.3prime Sequence
964 bp (759 high quality bases) assembled on 2005-12-03
> BO06322.3prime
ATGGTCTAGAAAGCTTGCTAATTTGGAACCGTTCTTGGCGGCCAACAGGA
TATTGAGGACATCGTCGGCACAGCCCCAGCACAAAGTGACTCCACTGCCG
CCATGTCCATAGTTGTGGATGAGGAGCTTGCGGCCGCGGCGCTCGGCTTC
CAGTCGGAGTTGGGTGCGACCCGGCCGGAGACCTACCCAATCAAAGAGGC
ACTCCGTGTGCTCCAAACCAGGAATGTACCGCTGACAGCCATCGACGATC
ATCCGCCTGTCGTTCTGGCAGACTTTAGTGTTGTAGTCCCGCTCCTGATG
GGTTCCGCCCAGGACAACACTTTCGGTGTTGGGTATAATATAGTTGCCAT
CATCACTCTCGTCCAGCACGGCAGAGAAAATCCAGTTGGCCCTCACCCGG
GAAACTTGGCCACGCACTGCGTACATTTGATCGTCGTTTAGTAGGGTCTT
AGAGCCCAATCCGGAGCAATTGACTATCACATCGTACTCGGAATCGGCTA
CAAATGCATCCAGGTCTGTAATCCTTTTCCGGACAACAACACCTCCATTT
CGGGTGAAACGCTTCATCAAATACGGCAGTAGCTTAATGGGCTCCGAGGT
GTAGGTAACAAAGGATAAACCAGACGTGAACTTAACGCTGCGACCTTTAT
TGTAGGCAGCCAGCTGTTCCTTGGACAGATCCACTGCTCCATAGACAATG
TCACGCCAAAAATCTTCGACCGTGTCCACCGTTGAGGTGCTCAGCCGAAT
GCAGGGTAGCAGACAAACGCCAGCCTCTCCGGCATCCTCGCTCAGCCAGA
TCTTCTCCAAAAATTGGTGCATGCTCTTCGACCACTTGTAGACTTTCGCC
TGCGAAGTGCCGCCCAGAAGGTACGGACCCCAGAGACCAGCCGAACCATC
TCCAGTTGTGTTAAGCGTGAAGTCCTCCGATATGATCGTCACCTTTTATG
GTGTCTTTCCATCG
BO06322.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-PA | 1026 | CG11236-RA | 96..1023 | 946..19 | 4615 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:40:07
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-RA | 1181 | CG11236-RA | 119..1064 | 964..19 | 4670 | 99.7 | Minus |
CG11236-RB | 1172 | CG11236-RB | 119..1055 | 964..19 | 4525 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6803946..6804255 | 328..19 | 1550 | 100 | Minus |
2L | 23513712 | 2L | 6803592..6803888 | 625..329 | 1485 | 100 | Minus |
2L | 23513712 | 2L | 6803310..6803524 | 838..624 | 1075 | 100 | Minus |
2L | 23513712 | 2L | 6803129..6803254 | 964..839 | 570 | 96.8 | Minus |
Blast to na_te.dros performed on 2015-02-11 22:40:06 has no hits.
BO06322.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:20 Download gff for
BO06322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-PA | 78..1026 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:48 Download gff for
BO06322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-PA | 78..1026 | 15..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:36 Download gff for
BO06322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 119..1068 | 14..964 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:20:52 Download gff for
BO06322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 119..1068 | 14..964 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:20:52 Download gff for
BO06322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6803129..6803254 | 839..964 | 97 | -> | Minus |
2L | 6803310..6803522 | 626..838 | 100 | -> | Minus |
2L | 6803592..6803888 | 329..625 | 100 | -> | Minus |
2L | 6803946..6804259 | 14..328 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:36 Download gff for
BO06322.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6803129..6803254 | 839..964 | 97 | -> | Minus |
arm_2L | 6803310..6803522 | 626..838 | 100 | -> | Minus |
arm_2L | 6803592..6803888 | 329..625 | 100 | -> | Minus |
arm_2L | 6803946..6804259 | 14..328 | 99 | | Minus |
BO06322.5prime Sequence
939 bp (838 high quality bases) assembled on 2005-12-03
> BO06322.5prime
GAAGTTATCAGTCGACATGCCTAACATTGCAGTTATCGGTGCCGGGGTTA
ATGGTGTTGCCAGTGCCATTAAGATACTGGAACACTATGTGAACGATGGA
AAGACACCCATAAAGGTGACGATCATATCGGAGGACTTCACGCCTAACAC
AACTGGAGATGGTTCGGCTGGTCTCTGGGGTCCGTACCTTCTGGGCGGCA
CTTCGCAGGCGAAAGTCTACAAGTGGTCGAAGAGCATGCACCAATTTTTG
GAGAAGATCTGGCTGAGCGAGGATGCCGGAGAGGCTGGCGTTTGTCTGCT
ACCCTGCATTCGGCTGAGCACCTCAACGGTGGACACGGTCGAAGATTTTT
GGCGTGACATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACAGCTGGCT
GCCTACAATAAAGGTCGCAGCGTTAAGTTCACGTCTGGTTTATCCTTTGT
TACCTACACCTCGGAGCCCATTAAGCTACTGCCGTATTTGATGAAGCGTT
TCACCCGAAATGGAGGTGTTGTTGTCCGGAAAAGGATTACAGACCTGGAT
GCATTTGTAGCCGATTCCGAGTACGATGTGATAGTCAATTGCTCCGGATT
GGGCTCTAAGACCCTACTAAACGACGATCAAATGTACGCAGTGCGTGGCC
AAGTTTCCCGGGTGAGGGCCAACTGGATTTTCTCTGCCGTGCTGGACGAG
AGTGATGATGGCAACTATATTATACCCAACACCGAAAGTGTTGTCCTGGG
CGGAACCCATCAGGAGCGGGACTACAACACTAAAGTCTGCCAGAACGACA
GGCGGATGATCGTCGATGGCTGTCAGCGGTACATTCCTGGTTTGGAGCAC
ACGGAGTGCCTCTTTGATTGGGTAGGTCTCCGGGCGGGTCGCACCCAACT
CCGACTGGAAGCCGAGCGCCGCGGCCGCAAGCTCCTCAT
BO06322.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-PA | 1026 | CG11236-RA | 1..923 | 17..939 | 4590 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:41:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-RA | 1181 | CG11236-RA | 42..964 | 17..939 | 4600 | 99.9 | Plus |
CG11236-RB | 1172 | CG11236-RB | 42..955 | 17..939 | 4455 | 98.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:41:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6803592..6803888 | 433..729 | 1485 | 100 | Plus |
2L | 23513712 | 2L | 6803310..6803524 | 220..434 | 1075 | 100 | Plus |
2L | 23513712 | 2L | 6803946..6804155 | 730..939 | 1035 | 99.5 | Plus |
2L | 23513712 | 2L | 6803052..6803254 | 17..219 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:41:47 has no hits.
BO06322.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:21 Download gff for
BO06322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:49 Download gff for
BO06322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-PA | 1..923 | 17..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 11:43:45 Download gff for
BO06322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 38..964 | 10..939 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:44:57 Download gff for
BO06322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 38..964 | 10..939 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:44:57 Download gff for
BO06322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6803946..6804155 | 730..939 | 99 | | Plus |
2L | 6803310..6803522 | 220..432 | 100 | -> | Plus |
2L | 6803048..6803254 | 10..219 | 98 | -> | Plus |
2L | 6803592..6803888 | 433..729 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 11:43:45 Download gff for
BO06322.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6803048..6803254 | 10..219 | 98 | -> | Plus |
arm_2L | 6803310..6803522 | 220..432 | 100 | -> | Plus |
arm_2L | 6803592..6803888 | 433..729 | 100 | -> | Plus |
arm_2L | 6803946..6804155 | 730..939 | 99 | | Plus |
BO06322.complete Sequence
1057 bp (1057 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630345
> BO06322.complete
GAAGTTATCAGTCGACATGCCTAACATTGCAGTTATCGGTGCCGGGGTTA
ATGGTGTTGCCAGTGCCATTAAGATACTGGAACACTATGTGAACGATGGA
AAGACACCCATAAAGGTGACGATCATATCGGAGGACTTCACGCCTAACAC
AACTGGAGATGGTTCGGCTGGTCTCTGGGGTCCGTACCTTCTGGGCGGCA
CTTCGCAGGCGAAAGTCTACAAGTGGTCGAAGAGCATGCACCAATTTTTG
GAGAAGATCTGGCTGAGCGAGGATGCCGGAGAGGCTGGCGTTTGTCTGCT
ACCCTGCATTCGGCTGAGCACCTCAACGGTGGACACGGTCGAAGATTTTT
GGCGTGACATTGTCTATGGAGCAGTGGATCTGTCCAAGGAACAGCTGGCT
GCCTACAATAAAGGTCGCAGCGTTAAGTTCACGTCTGGTTTATCCTTTGT
TACCTACACCTCGGAGCCCATTAAGCTACTGCCGTATTTGATGAAGCGTT
TCACCCGAAATGGAGGTGTTGTTGTCCGGAAAAGGATTACAGACCTGGAT
GCATTTGTAGCCGATTCCGAGTACGATGTGATAGTCAATTGCTCCGGATT
GGGCTCTAAGACCCTACTAAACGACGATCAAATGTACGCAGTGCGTGGCC
AAGTTTCCCGGGTGAGGGCCAACTGGATTTTCTCTGCCGTGCTGGACGAG
AGTGATGATGGCAACTATATTATACCCAACACCGAAAGTGTTGTCCTGGG
CGGAACCCATCAGGAGCGGGACTACAACACTAAAGTCTGCCAGAACGACA
GGCGGATGATCGTCGATGGCTGTCAGCGGTACATTCCTGGTTTGGAGCAC
ACGGAGTGCCTCTTTGATTGGGTAGGTCTCCGGCCGGGTCGCACCCAACT
CCGACTGGAAGCCGAGCGCCGCGGCCGCAAGCTCCTCATCCACAACTATG
GACATGGCGGCAGTGGAGTCACTTTGTGCTGGGGCTGTGCCGACGATGTC
CTCAATATCCTGTTGGCCGCCAAGAACGGTTCCAAATTAGCAAGCTTTCT
AGACCAT
BO06322.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:40:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-RA | 1026 | CG11236-PA | 1..1023 | 17..1039 | 5115 | 100 | Plus |
CG11236-RB | 1017 | CG11236-PB | 1..1014 | 17..1039 | 4945 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:40:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-RA | 1181 | CG11236-RA | 42..1064 | 17..1039 | 5115 | 100 | Plus |
CG11236-RB | 1172 | CG11236-RB | 42..1055 | 17..1039 | 4945 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:40:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 6803946..6804255 | 730..1039 | 1550 | 100 | Plus |
2L | 23513712 | 2L | 6803592..6803888 | 433..729 | 1485 | 100 | Plus |
2L | 23513712 | 2L | 6803310..6803524 | 220..434 | 1075 | 100 | Plus |
2L | 23513712 | 2L | 6803052..6803254 | 17..219 | 1015 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:40:01 has no hits.
BO06322.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:28 Download gff for
BO06322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 1..1026 | 17..1043 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:46 Download gff for
BO06322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 16..1046 | 10..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:57:00 Download gff for
BO06322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 42..1064 | 17..1041 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:28 Download gff for
BO06322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 16..1046 | 10..1044 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:24:23 Download gff for
BO06322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11236-RA | 42..1064 | 17..1041 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:24:23 Download gff for
BO06322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 6803052..6803254 | 17..219 | 100 | -> | Plus |
2L | 6803310..6803522 | 220..432 | 100 | -> | Plus |
2L | 6803592..6803888 | 433..729 | 100 | -> | Plus |
2L | 6803946..6804255 | 730..1041 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:57:00 Download gff for
BO06322.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 6803052..6803254 | 17..219 | 100 | -> | Plus |
arm_2L | 6803310..6803522 | 220..432 | 100 | -> | Plus |
arm_2L | 6803592..6803888 | 433..729 | 100 | -> | Plus |
arm_2L | 6803946..6804255 | 730..1041 | 99 | | Plus |
BO06322.pep Sequence
Translation from 16 to 1057
> BO06322.pep
MPNIAVIGAGVNGVASAIKILEHYVNDGKTPIKVTIISEDFTPNTTGDGS
AGLWGPYLLGGTSQAKVYKWSKSMHQFLEKIWLSEDAGEAGVCLLPCIRL
STSTVDTVEDFWRDIVYGAVDLSKEQLAAYNKGRSVKFTSGLSFVTYTSE
PIKLLPYLMKRFTRNGGVVVRKRITDLDAFVADSEYDVIVNCSGLGSKTL
LNDDQMYAVRGQVSRVRANWIFSAVLDESDDGNYIIPNTESVVLGGTHQE
RDYNTKVCQNDRRMIVDGCQRYIPGLEHTECLFDWVGLRPGRTQLRLEAE
RRGRKLLIHNYGHGGSGVTLCWGCADDVLNILLAAKNGSKLASFLDH
BO06322.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11236-PA | 341 | CG11236-PA | 1..341 | 1..341 | 1799 | 100 | Plus |
CG11236-PB | 338 | CG11236-PB | 1..338 | 1..341 | 1771 | 99.1 | Plus |
CG12338-PB | 335 | CG12338-PB | 2..318 | 3..325 | 408 | 31.8 | Plus |
CG12338-PA | 335 | CG12338-PA | 2..318 | 3..325 | 408 | 31.8 | Plus |