Clone Sequence Records
BO06323.3prime Sequence
752 bp (751 high quality bases) assembled on 2005-12-03
> BO06323.3prime
ATGGTCTAGAAAGCTTGCCAGCTTGGTCTGCGCCGCCTTCGCGGGACCCA
CTTCCTTGGCCATCACCTGTATGCCCACGTGCGGGGCCGCCGGCTTGAAG
ACCACCTCTCCCTGAGGCTTGTAGTCGGCGAACTGCATGCGGAACACCTC
GTGGAAGCCCAGCTTCTCCATCACCCGGGCGGAGTAGTGGCTGGAGCAGA
GCACGTGGTACACATTGATGCCGTTCTCCCGCATGTACTCGTACGCCCTC
TCCGTCAGGCGGCCTGCGATGCCCAGGCCCCGGTAGTTGGTGTCCACCGA
CAGGATCTTGCCGTCCAGGATGAGCTCCTCGTCGGGATACACGTCGAAGA
TGTTGAACTGCTCCTCCACGTGGTCCATCAGCGAGAGGATCTTCTTGAAT
TTGGGATGTTCACAGGAGTCGGCCGCCTTTTCGGGCACATCATCGGGGGA
CGGACGCCTCATAAGTCCATTTAGGAACACACCGATAATCTCGCCCTTCT
TGTTGACCGCCTTGTAGGAGCAGTTGTCGGGTAGCGGTTTCAGGGAGTAC
TTCTCCAGCTCCTTGCACTCGCCAAGGTCGAGGAAGGTGTTCAGCGGTTC
ATCCTTGAAGAAAAAGGTCTTGAGCATGGCTATCACCGCCTCCCCATCCT
CCGGCTGGATCAGTTCGATGGTGTAGGGGCAGTCCTGGTCGACGGGGCAT
GCGGCTGGCTTCCCAGAGACGGTCAATGCGTCCTCCATGTCGACTGATAA
CT
BO06323.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3318-PA | 723 | Dat-RA | 1..720 | 738..19 | 3600 | 100 | Minus |
CG3318-PB | 828 | Dat-RB | 106..825 | 738..19 | 3600 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dat-RB | 1588 | CG3318-RB | 652..1371 | 738..19 | 3600 | 100 | Minus |
Dat-RA | 1275 | CG3318-RA | 339..1058 | 738..19 | 3600 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24157113..24157545 | 451..19 | 2165 | 100 | Minus |
2R | 25286936 | 2R | 24156895..24157049 | 605..451 | 775 | 100 | Minus |
2R | 25286936 | 2R | 24155843..24155978 | 738..603 | 680 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:07:49 has no hits.
BO06323.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:22 Download gff for
BO06323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-PA | 1..723 | 18..738 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:50 Download gff for
BO06323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3318-PB | 100..828 | 18..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:35 Download gff for
BO06323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 333..1058 | 19..746 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:05 Download gff for
BO06323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 333..1058 | 19..746 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:05 Download gff for
BO06323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24155837..24155977 | 604..746 | 97 | -> | Minus |
2R | 24156897..24157049 | 451..603 | 100 | -> | Minus |
2R | 24157114..24157545 | 19..450 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:35 Download gff for
BO06323.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20043360..20043500 | 604..746 | 97 | -> | Minus |
arm_2R | 20044420..20044572 | 451..603 | 100 | -> | Minus |
arm_2R | 20044637..20045068 | 19..450 | 100 | | Minus |
BO06323.5prime Sequence
752 bp (714 high quality bases) assembled on 2005-12-03
> BO06323.5prime
GAAGTTATCAGTCGACATGGAGGACGCATTGACCGTCTCTGGGAAGCCAG
CCGCATGCCCCGTCGACCAGGACTGCCCCTACACCATCGAACTGATCCAG
CCGGAGGATGGGGAGGCGGTGATAGCCATGCTCAAGACCTTTTTCTTCAA
GGATGAACCGCTGAACACCTTCCTCGACCTTGGCGAGTGCAAGGAGCTGG
AGAAGTACTCCCTGAAACCGCTACCCGACAACTGCTCCTACAAGGCGGTC
AACAAGAAGGGCGAGATTATCGGTGTGTTCCTAAATGGACTTATGAGGCG
TCCGTCCCCCGATGATGTGCCCGAAAAGGCGGCCGACTCCTGTGAACATC
CCAAATTCAAGAAGATCCTCTCGCTGATGGACCACGTGGAGGAGCAGTTC
AACATCTTCGACGTGTATCCCGACGAGGAGCTCATCCTGGACGGCAAGAT
CCTGTCGGTGGACACCAACTACCGGGGCCTGGGCATCGCAGGCCGCCTGA
CGGAGAGGGCGTACGAGTACATGCGGGAGAACGGCATCAATGTGTACCAC
GTGCTCTGCTCCAGCCACTACTCCGCCCGGGTGATGGAGAAGCTGGGCTT
CCACGAGGTGTTCCGCATGCAGTTCGCCGACTACAAGCCTCAGGGAGAGG
TGGTCTTCAAGCCGGCGGCCCCGCACGTGGGCATACAGGTGATGGCCAAG
GAAGTGGGTCCCGCGAAGGCGGCGCAGACCAAGCTGGCAAGCTTTCTAGA
CC
BO06323.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3318-PA | 723 | Dat-RA | 1..720 | 17..736 | 3600 | 100 | Plus |
CG3318-PB | 828 | Dat-RB | 106..825 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 05:03:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dat-RB | 1588 | CG3318-RB | 652..1371 | 17..736 | 3600 | 100 | Plus |
Dat-RA | 1275 | CG3318-RA | 339..1058 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 05:03:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24157113..24157545 | 304..736 | 2165 | 100 | Plus |
2R | 25286936 | 2R | 24156895..24157049 | 150..304 | 775 | 100 | Plus |
2R | 25286936 | 2R | 24155843..24155978 | 17..152 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 05:03:29 has no hits.
BO06323.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:23 Download gff for
BO06323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-PA | 1..723 | 17..737 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:52 Download gff for
BO06323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3318-PB | 100..828 | 9..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-23 06:18:29 Download gff for
BO06323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 333..1058 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-11 09:43:18 Download gff for
BO06323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 333..1058 | 9..736 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-11 09:43:18 Download gff for
BO06323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24157114..24157545 | 305..736 | 100 | | Plus |
2R | 24155837..24155977 | 9..151 | 97 | -> | Plus |
2R | 24156897..24157049 | 152..304 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-23 06:18:29 Download gff for
BO06323.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20043360..20043500 | 9..151 | 97 | -> | Plus |
arm_2R | 20044420..20044572 | 152..304 | 100 | -> | Plus |
arm_2R | 20044637..20045068 | 305..736 | 100 | | Plus |
BO06323.complete Sequence
754 bp (754 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630346
> BO06323.complete
GAAGTTATCAGTCGACATGGAGGACGCATTGACCGTCTCTGGGAAGCCAG
CCGCATGCCCCGTCGACCAGGACTGCCCCTACACCATCGAACTGATCCAG
CCGGAGGATGGGGAGGCGGTGATAGCCATGCTCAAGACCTTTTTCTTCAA
GGATGAACCGCTGAACACCTTCCTCGACCTTGGCGAGTGCAAGGAGCTGG
AGAAGTACTCCCTGAAACCGCTACCCGACAACTGCTCCTACAAGGCGGTC
AACAAGAAGGGCGAGATTATCGGTGTGTTCCTAAATGGACTTATGAGGCG
TCCGTCCCCCGATGATGTGCCCGAAAAGGCGGCCGACTCCTGTGAACATC
CCAAATTCAAGAAGATCCTCTCGCTGATGGACCACGTGGAGGAGCAGTTC
AACATCTTCGACGTGTATCCCGACGAGGAGCTCATCCTGGACGGCAAGAT
CCTGTCGGTGGACACCAACTACCGGGGCCTGGGCATCGCAGGCCGCCTGA
CGGAGAGGGCGTACGAGTACATGCGGGAGAACGGCATCAATGTGTACCAC
GTGCTCTGCTCCAGCCACTACTCCGCCCGGGTGATGGAGAAGCTGGGCTT
CCACGAGGTGTTCCGCATGCAGTTCGCCGACTACAAGCCTCAGGGAGAGG
TGGTCTTCAAGCCGGCGGCCCCGCACGTGGGCATACAGGTGATGGCCAAG
GAAGTGGGTCCCGCGAAGGCGGCGCAGACCAAGCTGGCAAGCTTTCTAGA
CCAT
BO06323.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:08:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dat-RB | 828 | CG3318-PB | 106..825 | 17..736 | 3600 | 100 | Plus |
Dat-RA | 723 | CG3318-PA | 1..720 | 17..736 | 3600 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:09:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dat-RB | 1588 | CG3318-RB | 652..1371 | 17..736 | 3600 | 100 | Plus |
Dat-RA | 1275 | CG3318-RA | 339..1058 | 17..736 | 3600 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:08:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 24157113..24157545 | 304..736 | 2165 | 100 | Plus |
2R | 25286936 | 2R | 24156895..24157049 | 150..304 | 775 | 100 | Plus |
2R | 25286936 | 2R | 24155843..24155978 | 17..152 | 680 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 01:08:59 has no hits.
BO06323.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:30 Download gff for
BO06323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RB | 100..828 | 9..737 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:48 Download gff for
BO06323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RB | 529..1254 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:40:23 Download gff for
BO06323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 339..1058 | 17..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:30 Download gff for
BO06323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RB | 529..1254 | 9..736 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:45:48 Download gff for
BO06323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dat-RA | 339..1058 | 17..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:45:48 Download gff for
BO06323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 24155843..24155977 | 17..151 | 100 | -> | Plus |
2R | 24156897..24157049 | 152..304 | 100 | -> | Plus |
2R | 24157114..24157545 | 305..738 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:40:23 Download gff for
BO06323.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 20043366..20043500 | 17..151 | 100 | -> | Plus |
arm_2R | 20044420..20044572 | 152..304 | 100 | -> | Plus |
arm_2R | 20044637..20045068 | 305..738 | 99 | | Plus |
BO06323.pep Sequence
Translation from 16 to 754
> BO06323.pep
MEDALTVSGKPAACPVDQDCPYTIELIQPEDGEAVIAMLKTFFFKDEPLN
TFLDLGECKELEKYSLKPLPDNCSYKAVNKKGEIIGVFLNGLMRRPSPDD
VPEKAADSCEHPKFKKILSLMDHVEEQFNIFDVYPDEELILDGKILSVDT
NYRGLGIAGRLTERAYEYMRENGINVYHVLCSSHYSARVMEKLGFHEVFR
MQFADYKPQGEVVFKPAAPHVGIQVMAKEVGPAKAAQTKLASFLDH
BO06323.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dat-PA | 240 | CG3318-PA | 1..240 | 1..240 | 1266 | 100 | Plus |
Dat-PB | 275 | CG3318-PB | 36..275 | 1..240 | 1266 | 100 | Plus |
CG13759-PD | 228 | CG13759-PD | 4..216 | 25..230 | 234 | 29.5 | Plus |
CG13759-PC | 228 | CG13759-PC | 4..216 | 25..230 | 234 | 29.5 | Plus |
CG13759-PB | 228 | CG13759-PB | 4..216 | 25..230 | 234 | 29.5 | Plus |