Clone Sequence Records
BO06325.3prime Sequence
846 bp (752 high quality bases) assembled on 2005-12-03
> BO06325.3prime
ATGGTCTAGAAAGCTTGCTTGGAACTCTGAATTTGTTTGCTCGGAAATCT
TGAAGCTGCAAAGTTGGGGTGTTGTTGAGGCGCCCCGAACCACGCAATAA
GCTATGAATCGTTCAATCATCATTTCAAAGTCGCCATAGGCGGCGGAGTG
ATCCATGCGCACCTGCAGGAAGTACTTGTGTATCTCGGCACCCAGATTGT
CCTTCCAATCAGGACACTCCTCGCGTATACGTCTGCAATTGATGATCATG
CTGAAAGTGCGGATGAGCATAAACAAATCTGCCTGGCGTCCACTGTTTGC
CAACTGGCGCCAGTTGACCGTTTTGGCCATTTCAAAAGCCTTGAGAGCAT
ATTCCTTCTGGTCCAGTTCAACTGGTTCTCCCGTGTACCGTCCCATTATG
GTGAGTAGCAGGGCCATAGCTACATCGTTGCCAAGATGGCAGGATTCTAC
CATGGCGGGAATCGCGGCCTGCAGGTCCAGCACTCTTTCCAGGCGCTCCA
TACCCACGCCAGTGATAAGGTTTTCGTACAACCCACTGGCCATGTAGAAC
ATCTCCTCCGAGTCCAGGGACTCTGCCAGGTGACACACCACATCCACCAT
CATGTAGCGCTCCTTCATCAGCAGAACGTTGTCCCTTTGGTACGTCATCA
TCATAATGGAGAGGGTAAACAGATCGAGCAGCTGCTGCAAATTGAGTTCC
AGCTTCCCGGCTAAGGTAGCCATCATGCGATTCAGCAACTGTTTGCCGTC
TGTGGTTTCTGCAGCGTAAGGAAAACAATGCTTGATGGACGACTTCCGGA
GAAAGGACATGATGGATTCGTGGTCATAGCCTAGGCGCATTTCATC
BO06325.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-PA | 876 | CG33107-RA | 46..873 | 846..19 | 4090 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:38:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-RA | 1067 | CG33107-RA | 120..947 | 846..19 | 4110 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:38:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22583699..22583929 | 118..348 | 1155 | 100 | Plus |
3R | 32079331 | 3R | 22583987..22584193 | 348..554 | 1035 | 100 | Plus |
3R | 32079331 | 3R | 22584250..22584437 | 553..740 | 940 | 100 | Plus |
3R | 32079331 | 3R | 22584492..22584599 | 739..846 | 510 | 98.1 | Plus |
3R | 32079331 | 3R | 22583472..22583523 | 19..70 | 260 | 100 | Plus |
3R | 32079331 | 3R | 22583595..22583642 | 71..118 | 240 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-10 15:38:23 has no hits.
BO06325.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:26 Download gff for
BO06325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-PA | 46..876 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:56 Download gff for
BO06325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-PA | 46..876 | 15..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:59:54 Download gff for
BO06325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 120..952 | 11..846 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:38 Download gff for
BO06325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 120..952 | 11..846 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:38 Download gff for
BO06325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22583467..22583523 | 11..70 | 93 | <- | Plus |
3R | 22583595..22583641 | 71..117 | 100 | <- | Plus |
3R | 22583699..22583929 | 118..348 | 100 | <- | Plus |
3R | 22583988..22584191 | 349..552 | 100 | <- | Plus |
3R | 22584250..22584435 | 553..738 | 100 | <- | Plus |
3R | 22584492..22584599 | 739..846 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:59:54 Download gff for
BO06325.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18409317..18409363 | 71..117 | 100 | <- | Plus |
arm_3R | 18410214..18410321 | 739..846 | 98 | | Plus |
arm_3R | 18409189..18409245 | 11..70 | 93 | <- | Plus |
arm_3R | 18409421..18409651 | 118..348 | 100 | <- | Plus |
arm_3R | 18409710..18409913 | 349..552 | 100 | <- | Plus |
arm_3R | 18409972..18410157 | 553..738 | 100 | <- | Plus |
BO06325.5prime Sequence
828 bp (806 high quality bases) assembled on 2005-12-03
> BO06325.5prime
GAAGTTATCAGTCGACATGAATCTATCTGATTCATCGTTGAATAATTCCC
TCGTGGAAGTGGATGAAATGCGCCTAGGCTATGACCACGAATCCATCATG
TCCTTTCTCCGGAAGTCGTCCATCAAGCATTTGTTTCCTTACGCTGCAGA
AACCACAGACGGCAAACAGTTGCTGAATCGCATGATGGCTACCTTAGCCG
GGAAGCTGGAACTCAATTTGCAGCAGCTGCTCGATCTGTTTACCCTCTCC
ATTATGATGATGACGTACCAAAGGGACAACGTTCTGCTGATGAAGGAGCG
CTACATGATGGTGGATGTGGTGTGTCACCTGGCAGAGTCCCTGGACTCGG
AGGAGATGTTCTACATGGCCAGTGGGTTGTACGAAAACCTTATCACTGGC
GTGGGTATGGAGCGCCTGGAAAGAGTGCTGGACCTGCAGGCCGCGATTCC
CGCCATGGTAGAATCCTGCCATCTTGGCAACGATGTAGCTATGGCCCTGC
TACTCACCATAATGGGACGGTACACGGGAGAACCAGTTGAACTGGACCAG
AAGGAATATGCTCTCAAGGCTTTTGAAATGGCCAAAACGGTCAACTGGCG
CCAGTTGGCAAACAGTGGACGCCAGGCAGATTTGTTTATGCTCATCCGCA
CTTTCAGCATGATCATCAATTGCAGACGTATACGCGAGGAGTGTCCTGAT
TGGAAGGACAATCTGGGTGCCGAGATACACAAGTACTTCCTGCAGGTGCG
CATGGATCACTCCGCCGCCTATGGCGACTTTGAAATGATGATTGAACGAT
TCATAGCTTATTGCGTGGTTCGGGGCGC
BO06325.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-PA | 876 | CG33107-RA | 1..812 | 17..828 | 4060 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-10 15:39:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-RA | 1067 | CG33107-RA | 75..886 | 17..828 | 4060 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-10 15:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22583699..22583929 | 790..560 | 1155 | 100 | Minus |
3R | 32079331 | 3R | 22583987..22584193 | 560..354 | 1035 | 100 | Minus |
3R | 32079331 | 3R | 22584250..22584437 | 355..168 | 940 | 100 | Minus |
3R | 32079331 | 3R | 22584492..22584644 | 169..17 | 765 | 100 | Minus |
3R | 32079331 | 3R | 22583604..22583642 | 828..790 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-10 15:39:39 has no hits.
BO06325.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:27 Download gff for
BO06325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-PA | 1..812 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:58 Download gff for
BO06325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-PA | 1..812 | 17..828 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-15 05:59:57 Download gff for
BO06325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 66..886 | 9..828 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-10 18:11:50 Download gff for
BO06325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 66..886 | 9..828 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-10 18:11:50 Download gff for
BO06325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22583699..22583929 | 560..790 | 100 | <- | Minus |
3R | 22583988..22584191 | 356..559 | 100 | <- | Minus |
3R | 22584250..22584435 | 170..355 | 100 | <- | Minus |
3R | 22584492..22584653 | 9..169 | 97 | | Minus |
3R | 22583604..22583641 | 791..828 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-15 05:59:57 Download gff for
BO06325.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18409326..18409363 | 791..828 | 100 | <- | Minus |
arm_3R | 18409421..18409651 | 560..790 | 100 | <- | Minus |
arm_3R | 18409710..18409913 | 356..559 | 100 | <- | Minus |
arm_3R | 18409972..18410157 | 170..355 | 100 | <- | Minus |
arm_3R | 18410214..18410375 | 9..169 | 97 | | Minus |
BO06325.complete Sequence
907 bp (907 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630348
> BO06325.complete
GAAGTTATCAGTCGACATGAATCTATCTGATTCATCGTTGAATAATTCCC
TCGTGGAAGTGGATGAAATGCGCCTAGGCTATGACCACGAATCCATCATG
TCCTTTCTCCGGAAGTCGTCCATCAAGCATTTGTTTCCTTACGCTGCAGA
AACCACAGACGGCAAACAGTTGCTGAATCGCATGATGGCTACCTTAGCCG
GGAAGCTGGAACTCAATTTGCAGCAGCTGCTCGATCTGTTTACCCTCTCC
ATTATGATGATGACGTACCAAAGGGACAACGTTCTGCTGATGAAGGAGCG
CTACATGATGGTGGATGTGGTGTGTCACCTGGCAGAGTCCCTGGACTCGG
AGGAGATGTTCTACATGGCCAGTGGGTTGTACGAAAACCTTATCACTGGC
GTGGGTATGGAGCGCCTGGAAAGAGTGCTGGACCTGCAGGCCGCGATTCC
CGCCATGGTAGAATCCTGCCATCTTGGCAACGATGTAGCTATGGCCCTGC
TACTCACCATAATGGGACGGTACACGGGAGAACCAGTTGAACTGGACCAG
AAGGAATATGCTCTCAAGGCTTTTGAAATGGCCAAAACGGTCAACTGGCG
CCAGTTGGCAAACAGTGGACGCCAGGCAGATTTGTTTATGCTCATCCGCA
CTTTCAGCATGATCATCAATTGCAGACGTATACGCGAGGAGTGTCCTGAT
TGGAAGGACAATCTGGGTGCCGAGATACACAAGTACTTCCTGCAGGTGCG
CATGGATCACTCCGCCGCCTATGGCGACTTTGAAATGATGATTGAACGAT
TCATAGCTTATTGCGTGGTTCGGGGCGCCTCAACAACACCCCAACTTTGC
AGCTTCAAGATTTCCGAGCAAACAAATTCAGAGTTCCAAGCAAGCTTTCT
AGACCAT
BO06325.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:33:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-RA | 876 | CG33107-PA | 1..873 | 17..889 | 4365 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:33:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-RA | 1067 | CG33107-RA | 75..947 | 17..889 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:33:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 22583699..22583929 | 790..560 | 1155 | 100 | Minus |
3R | 32079331 | 3R | 22583987..22584193 | 560..354 | 1035 | 100 | Minus |
3R | 32079331 | 3R | 22584250..22584437 | 355..168 | 940 | 100 | Minus |
3R | 32079331 | 3R | 22584492..22584644 | 169..17 | 765 | 100 | Minus |
3R | 32079331 | 3R | 22583472..22583523 | 889..838 | 260 | 100 | Minus |
3R | 32079331 | 3R | 22583595..22583642 | 837..790 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 16:33:02 has no hits.
BO06325.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:33 Download gff for
BO06325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 1..876 | 17..893 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:52 Download gff for
BO06325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 160..1046 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 18:55:41 Download gff for
BO06325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 75..947 | 17..891 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:33 Download gff for
BO06325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 160..1046 | 9..897 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:21:02 Download gff for
BO06325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG33107-RA | 75..947 | 17..891 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:21:02 Download gff for
BO06325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 22584250..22584435 | 170..355 | 100 | <- | Minus |
3R | 22584492..22584644 | 17..169 | 100 | | Minus |
3R | 22583470..22583523 | 838..891 | 96 | <- | Minus |
3R | 22583595..22583641 | 791..837 | 100 | <- | Minus |
3R | 22583699..22583929 | 560..790 | 100 | <- | Minus |
3R | 22583988..22584191 | 356..559 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 18:55:41 Download gff for
BO06325.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 18410214..18410366 | 17..169 | 100 | | Minus |
arm_3R | 18409192..18409245 | 838..891 | 96 | <- | Minus |
arm_3R | 18409317..18409363 | 791..837 | 100 | <- | Minus |
arm_3R | 18409421..18409651 | 560..790 | 100 | <- | Minus |
arm_3R | 18409710..18409913 | 356..559 | 100 | <- | Minus |
arm_3R | 18409972..18410157 | 170..355 | 100 | <- | Minus |
BO06325.pep Sequence
Translation from 16 to 907
> BO06325.pep
MNLSDSSLNNSLVEVDEMRLGYDHESIMSFLRKSSIKHLFPYAAETTDGK
QLLNRMMATLAGKLELNLQQLLDLFTLSIMMMTYQRDNVLLMKERYMMVD
VVCHLAESLDSEEMFYMASGLYENLITGVGMERLERVLDLQAAIPAMVES
CHLGNDVAMALLLTIMGRYTGEPVELDQKEYALKAFEMAKTVNWRQLANS
GRQADLFMLIRTFSMIINCRRIREECPDWKDNLGAEIHKYFLQVRMDHSA
AYGDFEMMIERFIAYCVVRGASTTPQLCSFKISEQTNSEFQASFLDH
BO06325.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG33107-PA | 291 | CG33107-PA | 1..291 | 1..291 | 1488 | 100 | Plus |