Clone Sequence Records
BO06326.3prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-03
> BO06326.3prime
ATGGTCTAGAAAGCTTGCCATAGACTCGATGCAGACATCAATGTTGGGCA
GAAAAGAGTTAAAGGACGCTGTAACTTTATTGGTGGCATTTACGAAGCAG
GAACTGGTATCGGCTGGCAATTTGGCAATCAGTTTTAGGGTTTTATTGAT
CTTTCGGGTCAGCCTCATGGATGCCTTGAACAATTTCCAGAAGCATTTGG
CCGAGTTTTTGATGGACGAGCCCACGGACTTATCCGTGGCACAAAGTTTC
GAATGCAGATGCAAAATATCGTCGCAGATTTTGATAATCTCCTTAACGGA
GTCCACAATCTTGGCCACATCCTTGGGAATGGCAGTGCCACAGGCATCAA
TAGCATCCACATAGCTGGTGCATGAACTAAGGATGTTTGTCACCTCCTTG
ATAATACAGTTGGTGCCTCGAACCGTTTTCAATGCCTTGCGAAGGATTTT
AAGGCATGTTCTAATAAAGCCCTGTGCCTCCACATCCATGTAGTCAGTGT
CATTGTCCAGTTCATCCAGCAACTGCTCCAATTCCGATTCAAAGTCGAAA
TCATAGTCGAAGTTCTCGTTCTCCAGCAATTCTATTGCATTGGCCCGCGT
GGTCAGCAGACAGGTGGCCGAAACCAGAACCAAAAGGCAAACGGTGATGG
CTTTCATGTCGACTGATAACT
BO06326.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-PA | 642 | CG5107-RA | 1..639 | 657..19 | 3195 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 16:21:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-RA | 681 | CG5107-RA | 27..665 | 657..19 | 3195 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 16:21:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25505339..25505915 | 595..19 | 2885 | 100 | Minus |
3R | 32079331 | 3R | 25505217..25505280 | 657..594 | 320 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-12 16:21:19 has no hits.
BO06326.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:28 Download gff for
BO06326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-PA | 1..642 | 15..657 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:17:59 Download gff for
BO06326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-PA | 1..642 | 15..657 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-30 15:12:55 Download gff for
BO06326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 3..646 | 15..659 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 18:41:10 Download gff for
BO06326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 20..668 | 15..665 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 18:41:10 Download gff for
BO06326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25505210..25505279 | 595..665 | 95 | -> | Minus |
3R | 25505340..25505918 | 15..594 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-30 15:12:55 Download gff for
BO06326.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21330932..21331001 | 595..665 | 95 | -> | Minus |
arm_3R | 21331062..21331640 | 15..594 | 99 | | Minus |
BO06326.5prime Sequence
671 bp (670 high quality bases) assembled on 2005-12-03
> BO06326.5prime
GAAGTTATCAGTCGACATGAAAGCCATCACCGTTTGCCTTTTGGTTCTGG
TTTCGGCCACCTGTCTGCTGACCACGCGGGCCAATGCAATAGAATTGCTG
GAGAACGAGAACTTCGACTATGATTTCGACTTTGAATCGGAATTGGAGCA
GTTGCTGGATGAACTGGACAATGACACTGACTACATGGATGTGGAGGCAC
AGGGCTTTATTAGAACATGCCTTAAAATCCTTCGCAAGGCATTGAAAACG
GTTCGAGGCACCAACTGTATTATCAAGGAGGTGACAAACATCCTTAGTTC
ATGCACCAGCTATGTGGATGCTATTGATGCCTGTGGCACTGCCATTCCCA
AGGATGTGGCCAAGATTGTGGACTCCGTTAAGGAGATTATCAAAATCTGC
GACGATATTTTGCATCTGCATTCGAAACTTTGTGCCACGGATAAGTCCGT
GGGCTCGTCCATCAAAAACTCGGCCAAATGCTTCTGGAAATTGTTCAAGG
CATCCATGAGGCTGACCCGAAAGATCAATAAAACCCTAAAACTGATTGCC
AAATTGCCAGCCGATACCAGTTCCTGCTTCGTAAATGCCACCAATAAAGT
TACAGCGTCCTTTAACTCTTTTCTGCCCAACATTGATGTCTGCATCGAGT
CTATGGCAAGCTTTCTAGACC
BO06326.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-PA | 642 | CG5107-RA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-12 10:31:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-RA | 681 | CG5107-RA | 27..665 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-12 10:31:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25505339..25505915 | 79..655 | 2885 | 100 | Plus |
3R | 32079331 | 3R | 25505217..25505280 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-12 10:31:58 has no hits.
BO06326.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:29 Download gff for
BO06326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-PA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:01 Download gff for
BO06326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-PA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-29 20:58:29 Download gff for
BO06326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 3..646 | 15..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 13:16:27 Download gff for
BO06326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 20..668 | 9..659 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 13:16:27 Download gff for
BO06326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25505210..25505279 | 9..79 | 95 | -> | Plus |
3R | 25505340..25505918 | 80..659 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-29 20:58:29 Download gff for
BO06326.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21330932..21331001 | 9..79 | 95 | -> | Plus |
arm_3R | 21331062..21331640 | 80..659 | 99 | | Plus |
BO06326.complete Sequence
673 bp (673 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630349
> BO06326.complete
GAAGTTATCAGTCGACATGAAAGCCATCACCGTTTGCCTTTTGGTTCTGG
TTTCGGCCACCTGTCTGCTGACCACGCGGGCCAATGCAATAGAATTGCTG
GAGAACGAGAACTTCGACTATGATTTCGACTTTGAATCGGAATTGGAGCA
GTTGCTGGATGAACTGGACAATGACACTGACTACATGGATGTGGAGGCAC
AGGGCTTTATTAGAACATGCCTTAAAATCCTTCGCAAGGCATTGAAAACG
GTTCGAGGCACCAACTGTATTATCAAGGAGGTGACAAACATCCTTAGTTC
ATGCACCAGCTATGTGGATGCTATTGATGCCTGTGGCACTGCCATTCCCA
AGGATGTGGCCAAGATTGTGGACTCCGTTAAGGAGATTATCAAAATCTGC
GACGATATTTTGCATCTGCATTCGAAACTTTGTGCCACGGATAAGTCCGT
GGGCTCGTCCATCAAAAACTCGGCCAAATGCTTCTGGAAATTGTTCAAGG
CATCCATGAGGCTGACCCGAAAGATCAATAAAACCCTAAAACTGATTGCC
AAATTGCCAGCCGATACCAGTTCCTGCTTCGTAAATGCCACCAATAAAGT
TACAGCGTCCTTTAACTCTTTTCTGCCCAACATTGATGTCTGCATCGAGT
CTATGGCAAGCTTTCTAGACCAT
BO06326.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 00:36:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-RA | 642 | CG5107-PA | 1..639 | 17..655 | 3195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 00:36:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-RA | 681 | CG5107-RA | 27..665 | 17..655 | 3195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 00:36:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 25505339..25505915 | 79..655 | 2885 | 100 | Plus |
3R | 32079331 | 3R | 25505217..25505280 | 17..80 | 320 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 00:36:07 has no hits.
BO06326.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 23:01:18 Download gff for
BO06326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 1..642 | 17..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 07:33:30 Download gff for
BO06326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 3..646 | 15..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:27:50 Download gff for
BO06326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 5..643 | 17..657 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 23:01:18 Download gff for
BO06326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 3..646 | 15..659 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:34:41 Download gff for
BO06326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG5107-RA | 27..665 | 17..657 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 01:34:41 Download gff for
BO06326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 25505217..25505279 | 17..79 | 100 | -> | Plus |
3R | 25505340..25505915 | 80..657 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:27:50 Download gff for
BO06326.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 21330939..21331001 | 17..79 | 100 | -> | Plus |
arm_3R | 21331062..21331637 | 80..657 | 99 | | Plus |
BO06326.pep Sequence
Translation from 16 to 673
> BO06326.pep
MKAITVCLLVLVSATCLLTTRANAIELLENENFDYDFDFESELEQLLDEL
DNDTDYMDVEAQGFIRTCLKILRKALKTVRGTNCIIKEVTNILSSCTSYV
DAIDACGTAIPKDVAKIVDSVKEIIKICDDILHLHSKLCATDKSVGSSIK
NSAKCFWKLFKASMRLTRKINKTLKLIAKLPADTSSCFVNATNKVTASFN
SFLPNIDVCIESMASFLDH
BO06326.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 18:40:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG5107-PA | 213 | CG5107-PA | 1..213 | 1..213 | 1084 | 100 | Plus |
CG8664-PB | 214 | CG8664-PB | 1..213 | 1..213 | 415 | 43 | Plus |
CG8664-PA | 214 | CG8664-PA | 1..213 | 1..213 | 415 | 43 | Plus |
CG8661-PA | 198 | CG8661-PA | 31..193 | 49..209 | 231 | 32.1 | Plus |