Clone Sequence Records
BO06329.3prime Sequence
876 bp (753 high quality bases) assembled on 2005-12-03
> BO06329.3prime
ATGGTCTAGAAAGCTTGCGGAATCCTTTGCGCTAGAGATAATGCAATCCT
GAACCGCCTGGGCCACACAGGCGTCCTCCGAGGCCATGCCCATGGATTGA
AAGATGCTGATTTCTAGCTCCTTGGGATAGTTTCCATCCAGAATGATCTG
ACCCACTTCAGCGGTGATCGGCGCAGGTAATCCCACCAATTCAGCCTCGG
CATTGGCATAGCAATCCACGTAGACCTTGGCCTGCTGGTAAATCTTTGGA
GCCACCTCCGAAAAGTGAACTTCGCCGGCTCCCACAGCGTTAATATGAAC
AGCCCGTTTGGATTTCAGATCTGCCAACTGGATAAGCGGCTCCTTGGAGT
ACGTGGCGATGCAGATGATATCGGCATCCTGGCAAGCTTCGTGAGGACTT
GGACATACAGTAATCTGGGTTCCGCTCTCGGTGTTCAATTTCTGCCGCAG
TTGGTCCGCTAAACCCAGTGCCTTTGCCTGCGTGCGATTGTAAAGATTAA
GCTGCCTCACCCGGAAGTTCGCGCAGAAAGCGGCAGCATGGAGTTGTCCT
TGAACTCCACAGCCCACGATGGCCACGTTGATATTCCTTTCCTGCTCCGC
CTGCGCCCCAAAGCGCCTGAAGTACAGATACTTGGTGGCCACCAGTGAAG
CGGATACAGTGCGCCAGGTGGTCAAGTCCGTGCCCTCCATTATGGCCGAC
AGTTGACCGGTTTGATTGTCGAACAGCAGCACATGGGCATGGATGCTGGG
CAGCGGAGGATCCCGTCGGGGATTCCCACTGAACGAGGTCACCAACTTGC
AGGCCAGTGTTGAGTGGGTGTGCTCCACTTCCCCAGGATCCCCTGACGAT
TCCAGCCTGTAGTTGCCCACATAGGC
BO06329.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-PA | 1068 | CG4872-RA | 208..1065 | 876..19 | 4265 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-RA | 1283 | CG4872-RA | 316..1173 | 876..19 | 4275 | 99.9 | Minus |
CG9104-RA | 1707 | CG9104-RA | 1536..1607 | 19..90 | 360 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16881662..16882250 | 876..288 | 2930 | 99.8 | Minus |
X | 23542271 | X | 16882320..16882519 | 288..89 | 1000 | 100 | Minus |
X | 23542271 | X | 16882609..16882680 | 90..19 | 360 | 100 | Minus |
Blast to na_te.dros performed on 2015-02-13 06:07:58 has no hits.
BO06329.3prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:34 Download gff for
BO06329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-PA | 208..1068 | 16..876 | 99 | | Minus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:08 Download gff for
BO06329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-PA | 208..1068 | 16..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:36 Download gff for
BO06329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 316..1181 | 12..876 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:24 Download gff for
BO06329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 316..1181 | 12..876 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:24 Download gff for
BO06329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16882321..16882518 | 90..287 | 100 | -> | Minus |
X | 16882610..16882688 | 12..89 | 94 | | Minus |
X | 16881662..16882250 | 288..876 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:36 Download gff for
BO06329.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16775695..16776283 | 288..876 | 99 | -> | Minus |
arm_X | 16776354..16776551 | 90..287 | 100 | -> | Minus |
arm_X | 16776643..16776721 | 12..89 | 94 | | Minus |
BO06329.5prime Sequence
782 bp (776 high quality bases) assembled on 2005-12-03
> BO06329.5prime
GAAGTTATCAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGG
ATGCTGTGCGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAA
TCTGCACTTGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATC
CTTTGCCTTTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTG
GCAAGGTTCTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAA
TCGTCAAGGGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTG
CAAGTTGGTGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGC
CCAGCATCCATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTG
TCGGCCATAATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGC
TTCACTGGTGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGG
CGGAGCAGGAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAA
GGACAACTCCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCT
TAATCTTTACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAAC
TGCGGCAGAAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCA
AGTCCTCACGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTA
CTCCAAGGAGCCGCTTATCCAGTTGGCAGATC
BO06329.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-PA | 1068 | CG4872-RA | 1..766 | 17..782 | 3830 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:40:53
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-RA | 1283 | CG4872-RA | 109..874 | 17..782 | 3830 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:40:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16881455..16882220 | 17..782 | 3830 | 100 | Plus |
Blast to na_te.dros performed on 2015-02-11 22:40:51 has no hits.
BO06329.5prime Sim4 Records
Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:35 Download gff for
BO06329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:10 Download gff for
BO06329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-PA | 1..766 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:37 Download gff for
BO06329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 109..874 | 17..782 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:23 Download gff for
BO06329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 109..874 | 17..782 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:23 Download gff for
BO06329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16881455..16882220 | 17..782 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:37 Download gff for
BO06329.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16775488..16776253 | 17..782 | 100 | | Plus |
BO06329.complete Sequence
1099 bp (1099 high quality bases) assembled on 2005-10-27
GenBank Submission: FJ630350
> BO06329.complete
GAAGTTATCAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGG
ATGCTGTGCGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAA
TCTGCACTTGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATC
CTTTGCCTTTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTG
GCAAGGTTCTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAA
TCGTCAAGGGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTG
CAAGTTGGTGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGC
CCAGCATCCATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTG
TCGGCCATAATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGC
TTCACTGGTGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGG
CGGAGCAGGAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAA
GGACAACTCCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCT
TAATCTTTACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAAC
TGCGGCAGAAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCA
AGTCCTCACGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTA
CTCCAAGGAGCCGCTTATCCAGTTGGCAGATCTGAAATCCAAACGGGCTG
TTCATATTAACGCTGTGGGAGCCGGCGAAGTTCACTTTTCGGAGGTGGCT
CCAAAGATTTACCAGCAGGCCAAGGTCTACGTGGATTGCTATGCCAATGC
CGAGGCTGAATTGGTGGGATTACCTGCGCCGATCACCGCTGAAGTGGGTC
AGATCATTCTGGATGGAAACTATCCCAAGGAGCTAGAAATCAGCATCTTT
CAATCCATGGGCATGGCCTCGGAGGACGCCTGTGTGGCCCAGGCGGTTCA
GGATTGCATTATCTCTAGCGCAAAGGATTCCGCAAGCTTTCTAGACCAT
BO06329.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-RA | 1068 | CG4872-PA | 1..1065 | 17..1081 | 5325 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-RA | 1283 | CG4872-RA | 109..1173 | 17..1081 | 5325 | 100 | Plus |
CG9104-RA | 1707 | CG9104-RA | 1536..1607 | 1081..1010 | 360 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16881455..16882250 | 17..812 | 3980 | 100 | Plus |
X | 23542271 | X | 16882320..16882519 | 812..1011 | 1000 | 100 | Plus |
X | 23542271 | X | 16882609..16882680 | 1010..1081 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 16:57:02 has no hits.
BO06329.complete Sim4 Records
Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:34 Download gff for
BO06329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 1..1068 | 17..1084 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:53 Download gff for
BO06329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 86..1158 | 17..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:02 Download gff for
BO06329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 109..1173 | 17..1083 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:34 Download gff for
BO06329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 86..1158 | 17..1088 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:49 Download gff for
BO06329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4872-RA | 109..1173 | 17..1083 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:49 Download gff for
BO06329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16882321..16882518 | 813..1010 | 100 | -> | Plus |
X | 16882610..16882680 | 1011..1083 | 97 | | Plus |
X | 16881455..16882250 | 17..812 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:02 Download gff for
BO06329.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 16775488..16776283 | 17..812 | 100 | -> | Plus |
arm_X | 16776354..16776551 | 813..1010 | 100 | -> | Plus |
arm_X | 16776643..16776713 | 1011..1083 | 97 | | Plus |
BO06329.pep Sequence
Translation from 16 to 1099
> BO06329.pep
MSSSTPAYYNADAVRQVLTWPLVNKAVESALVAIVKQNPETPSTSFAFQP
KRTFIPCGKEPGKVLLTMPAYVGNYRLESSRDPGEVEHTHSTLACKLVTS
FSGNPRRDPPLPSIHAHVLLFDNQTGQLSAIMEGTDLTTWRTVSASLVAT
KYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAAFCANFRVRQLNLYNR
TQAKALGLADQLRQKLNTESGTQITVCPSPHEACQDADIICIATYSKEPL
IQLADLKSKRAVHINAVGAGEVHFSEVAPKIYQQAKVYVDCYANAEAELV
GLPAPITAEVGQIILDGNYPKELEISIFQSMGMASEDACVAQAVQDCIIS
SAKDSASFLDH
BO06329.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:46
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4872-PA | 355 | CG4872-PA | 1..355 | 1..355 | 1829 | 100 | Plus |