Clone BO06329 Report

Search the DGRC for BO06329

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:63
Well:29
Vector:pDNR-Dual
Associated Gene/TranscriptCG4872-RA
Protein status:BO06329.pep: validated full length
Sequenced Size:1099

Clone Sequence Records

BO06329.3prime Sequence

876 bp (753 high quality bases) assembled on 2005-12-03

> BO06329.3prime
ATGGTCTAGAAAGCTTGCGGAATCCTTTGCGCTAGAGATAATGCAATCCT
GAACCGCCTGGGCCACACAGGCGTCCTCCGAGGCCATGCCCATGGATTGA
AAGATGCTGATTTCTAGCTCCTTGGGATAGTTTCCATCCAGAATGATCTG
ACCCACTTCAGCGGTGATCGGCGCAGGTAATCCCACCAATTCAGCCTCGG
CATTGGCATAGCAATCCACGTAGACCTTGGCCTGCTGGTAAATCTTTGGA
GCCACCTCCGAAAAGTGAACTTCGCCGGCTCCCACAGCGTTAATATGAAC
AGCCCGTTTGGATTTCAGATCTGCCAACTGGATAAGCGGCTCCTTGGAGT
ACGTGGCGATGCAGATGATATCGGCATCCTGGCAAGCTTCGTGAGGACTT
GGACATACAGTAATCTGGGTTCCGCTCTCGGTGTTCAATTTCTGCCGCAG
TTGGTCCGCTAAACCCAGTGCCTTTGCCTGCGTGCGATTGTAAAGATTAA
GCTGCCTCACCCGGAAGTTCGCGCAGAAAGCGGCAGCATGGAGTTGTCCT
TGAACTCCACAGCCCACGATGGCCACGTTGATATTCCTTTCCTGCTCCGC
CTGCGCCCCAAAGCGCCTGAAGTACAGATACTTGGTGGCCACCAGTGAAG
CGGATACAGTGCGCCAGGTGGTCAAGTCCGTGCCCTCCATTATGGCCGAC
AGTTGACCGGTTTGATTGTCGAACAGCAGCACATGGGCATGGATGCTGGG
CAGCGGAGGATCCCGTCGGGGATTCCCACTGAACGAGGTCACCAACTTGC
AGGCCAGTGTTGAGTGGGTGTGCTCCACTTCCCCAGGATCCCCTGACGAT
TCCAGCCTGTAGTTGCCCACATAGGC

BO06329.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-PA 1068 CG4872-RA 208..1065 876..19 4265 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-13 06:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-RA 1283 CG4872-RA 316..1173 876..19 4275 99.9 Minus
CG9104-RA 1707 CG9104-RA 1536..1607 19..90 360 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-13 06:07:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16881662..16882250 876..288 2930 99.8 Minus
X 23542271 X 16882320..16882519 288..89 1000 100 Minus
X 23542271 X 16882609..16882680 90..19 360 100 Minus
Blast to na_te.dros performed on 2015-02-13 06:07:58 has no hits.

BO06329.3prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:34 Download gff for BO06329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-PA 208..1068 16..876 99   Minus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:08 Download gff for BO06329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-PA 208..1068 16..876 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-09-01 17:59:36 Download gff for BO06329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 316..1181 12..876 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-13 08:07:24 Download gff for BO06329.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 316..1181 12..876 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-13 08:07:24 Download gff for BO06329.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16882321..16882518 90..287 100 -> Minus
X 16882610..16882688 12..89 94   Minus
X 16881662..16882250 288..876 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-09-01 17:59:36 Download gff for BO06329.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16775695..16776283 288..876 99 -> Minus
arm_X 16776354..16776551 90..287 100 -> Minus
arm_X 16776643..16776721 12..89 94   Minus

BO06329.5prime Sequence

782 bp (776 high quality bases) assembled on 2005-12-03

> BO06329.5prime
GAAGTTATCAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGG
ATGCTGTGCGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAA
TCTGCACTTGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATC
CTTTGCCTTTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTG
GCAAGGTTCTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAA
TCGTCAAGGGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTG
CAAGTTGGTGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGC
CCAGCATCCATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTG
TCGGCCATAATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGC
TTCACTGGTGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGG
CGGAGCAGGAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAA
GGACAACTCCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCT
TAATCTTTACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAAC
TGCGGCAGAAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCA
AGTCCTCACGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTA
CTCCAAGGAGCCGCTTATCCAGTTGGCAGATC

BO06329.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-06 12:39:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-PA 1068 CG4872-RA 1..766 17..782 3830 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2015-02-11 22:40:53
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-RA 1283 CG4872-RA 109..874 17..782 3830 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2015-02-11 22:40:49
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16881455..16882220 17..782 3830 100 Plus
Blast to na_te.dros performed on 2015-02-11 22:40:51 has no hits.

BO06329.5prime Sim4 Records

Sim4 to dmel-all-CDS-r4.3.fasta performed 2007-01-18 02:46:35 Download gff for BO06329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-10 01:18:10 Download gff for BO06329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-PA 1..766 17..782 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-28 02:41:37 Download gff for BO06329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 109..874 17..782 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2015-02-12 01:22:23 Download gff for BO06329.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 109..874 17..782 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2015-02-12 01:22:23 Download gff for BO06329.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16881455..16882220 17..782 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-28 02:41:37 Download gff for BO06329.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 16775488..16776253 17..782 100   Plus

BO06329.complete Sequence

1099 bp (1099 high quality bases) assembled on 2005-10-27

GenBank Submission: FJ630350

> BO06329.complete
GAAGTTATCAGTCGACATGAGCAGCTCTACGCCAGCTTACTACAATGCGG
ATGCTGTGCGTCAGGTTCTCACCTGGCCGCTGGTCAATAAGGCAGTGGAA
TCTGCACTTGTAGCTATAGTTAAGCAGAATCCGGAAACGCCCTCCACATC
CTTTGCCTTTCAACCGAAGAGGACTTTTATTCCATGCGGCAAGGAACCTG
GCAAGGTTCTGCTCACCATGCCCGCCTATGTGGGCAACTACAGGCTGGAA
TCGTCAAGGGATCCTGGGGAAGTGGAGCACACCCACTCAACACTGGCCTG
CAAGTTGGTGACCTCGTTCAGTGGGAATCCCCGACGGGATCCTCCGCTGC
CCAGCATCCATGCCCATGTGCTGCTGTTCGACAATCAAACCGGTCAACTG
TCGGCCATAATGGAGGGCACGGACTTGACCACCTGGCGCACTGTATCCGC
TTCACTGGTGGCCACCAAGTATCTGTACTTCAGGCGCTTTGGGGCGCAGG
CGGAGCAGGAAAGGAATATCAACGTGGCCATCGTGGGCTGTGGAGTTCAA
GGACAACTCCATGCTGCCGCTTTCTGCGCGAACTTCCGGGTGAGGCAGCT
TAATCTTTACAATCGCACGCAGGCAAAGGCACTGGGTTTAGCGGACCAAC
TGCGGCAGAAATTGAACACCGAGAGCGGAACCCAGATTACTGTATGTCCA
AGTCCTCACGAAGCTTGCCAGGATGCCGATATCATCTGCATCGCCACGTA
CTCCAAGGAGCCGCTTATCCAGTTGGCAGATCTGAAATCCAAACGGGCTG
TTCATATTAACGCTGTGGGAGCCGGCGAAGTTCACTTTTCGGAGGTGGCT
CCAAAGATTTACCAGCAGGCCAAGGTCTACGTGGATTGCTATGCCAATGC
CGAGGCTGAATTGGTGGGATTACCTGCGCCGATCACCGCTGAAGTGGGTC
AGATCATTCTGGATGGAAACTATCCCAAGGAGCTAGAAATCAGCATCTTT
CAATCCATGGGCATGGCCTCGGAGGACGCCTGTGTGGCCCAGGCGGTTCA
GGATTGCATTATCTCTAGCGCAAAGGATTCCGCAAGCTTTCTAGACCAT

BO06329.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 16:57:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-RA 1068 CG4872-PA 1..1065 17..1081 5325 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 16:57:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-RA 1283 CG4872-RA 109..1173 17..1081 5325 100 Plus
CG9104-RA 1707 CG9104-RA 1536..1607 1081..1010 360 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 16:57:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16881455..16882250 17..812 3980 100 Plus
X 23542271 X 16882320..16882519 812..1011 1000 100 Plus
X 23542271 X 16882609..16882680 1010..1081 360 100 Plus
Blast to na_te.dros performed on 2014-11-27 16:57:02 has no hits.

BO06329.complete Sim4 Records

Sim4 to dmel-all-CDS-r5.9.fasta performed 2008-07-21 22:24:34 Download gff for BO06329.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 1..1068 17..1084 99   Plus
Sim4 to dmel-all-transcript-r5.12.fasta performed 2008-11-11 06:48:53 Download gff for BO06329.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 86..1158 17..1088 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 19:01:02 Download gff for BO06329.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 109..1173 17..1083 99   Plus
Sim4 to dmel-all-transcript-r5.9.fasta performed 2008-07-21 22:24:34 Download gff for BO06329.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 86..1158 17..1088 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 17:30:49 Download gff for BO06329.complete
Subject Subject Range Query Range Percent Splice Strand
CG4872-RA 109..1173 17..1083 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 17:30:49 Download gff for BO06329.complete
Subject Subject Range Query Range Percent Splice Strand
X 16882321..16882518 813..1010 100 -> Plus
X 16882610..16882680 1011..1083 97   Plus
X 16881455..16882250 17..812 100 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 19:01:02 Download gff for BO06329.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 16775488..16776283 17..812 100 -> Plus
arm_X 16776354..16776551 813..1010 100 -> Plus
arm_X 16776643..16776713 1011..1083 97   Plus

BO06329.pep Sequence

Translation from 16 to 1099

> BO06329.pep
MSSSTPAYYNADAVRQVLTWPLVNKAVESALVAIVKQNPETPSTSFAFQP
KRTFIPCGKEPGKVLLTMPAYVGNYRLESSRDPGEVEHTHSTLACKLVTS
FSGNPRRDPPLPSIHAHVLLFDNQTGQLSAIMEGTDLTTWRTVSASLVAT
KYLYFRRFGAQAEQERNINVAIVGCGVQGQLHAAAFCANFRVRQLNLYNR
TQAKALGLADQLRQKLNTESGTQITVCPSPHEACQDADIICIATYSKEPL
IQLADLKSKRAVHINAVGAGEVHFSEVAPKIYQQAKVYVDCYANAEAELV
GLPAPITAEVGQIILDGNYPKELEISIFQSMGMASEDACVAQAVQDCIIS
SAKDSASFLDH

BO06329.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 19:23:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG4872-PA 355 CG4872-PA 1..355 1..355 1829 100 Plus